mRNA_H-elongata_contig114552.1159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114552.1159.1
Unique NamemRNA_H-elongata_contig114552.1159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.130e-25
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 MVEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            MV+F+DKQV ELKKLW+NKRQLAFQGLNLAMIVLSALMIWK+LMVVTKSESPVVVVL
Sbjct:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVL 57
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.160e-22
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    4 VEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            ++ +DKQV ELKKLW NKRQLAFQGLNLAMIVLSALMIWK+LMVVT+SESPVVVVL
Sbjct:    1 MDIVDKQVVELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVVTRSESPVVVVL 56
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A6U5HKR9_9STRA (Signal peptidase I n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HKR9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.360e-20
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 MVEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            M + IDKQ+ ELKKLW NKRQLAFQ LNLAMIV SALMIWK LM VTKSESPVVVVL
Sbjct:    1 MKDIIDKQIVELKKLWLNKRQLAFQALNLAMIVFSALMIWKGLMCVTKSESPVVVVL 57
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A482SN16_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN16_9ARCH)

HSP 1 Score: 80.9 bits (198), Expect = 5.450e-19
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 VEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVLR 174
            ++ +  QV ELKKLW NKR L+FQ LNLAMIV SALMIWK LMVVTKSESPVVVVLR
Sbjct:    1 MDIVKSQVMELKKLWKNKRNLSFQILNLAMIVFSALMIWKGLMVVTKSESPVVVVLR 57
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.000e-18
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 MVEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            M E +  QV ELKKLW NKRQL FQ LNLAMIV SALMIWK+LMV+TKSESPVVVVL
Sbjct:    1 MWEIVQMQVFELKKLWANKRQLLFQSLNLAMIVFSALMIWKSLMVLTKSESPVVVVL 57
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.730e-18
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 VEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            +E ID Q++ELKKLW NKRQ  FQ LNLAMIV SALMIWK LM +TKSESPVVVVL
Sbjct:    1 MEMIDAQISELKKLWRNKRQFLFQALNLAMIVFSALMIWKGLMFITKSESPVVVVL 56
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 5.980e-18
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 MVEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            M+E I++Q+ ELKKLW NKR LAFQ LNLAMIV SALMIWK+LMV T+SESPVVVVL
Sbjct:    1 MMELIEQQLDELKKLWKNKRALAFQALNLAMIVFSALMIWKSLMVWTQSESPVVVVL 57
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A7S2URX0_9STRA (Signal peptidase complex catalytic subunit SEC11A n=3 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A7S2URX0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-17
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    7 EFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            + IDKQV ELKKLW NKRQL FQ LNLAMIV SALMIWK LM +TKSESPVVVVL
Sbjct:   26 DMIDKQVLELKKLWANKRQLMFQLLNLAMIVFSALMIWKGLMFMTKSESPVVVVL 80
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: B7GDX7_PHATC (Signal peptidase I n=5 Tax=Naviculales TaxID=38748 RepID=B7GDX7_PHATC)

HSP 1 Score: 80.5 bits (197), Expect = 1.760e-17
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    7 EFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVVVL 171
            + +DKQV ELKKLW NKRQL FQ LNLAMIV SALMIWK LM VT+SESPVVVVL
Sbjct:    4 DILDKQVFELKKLWANKRQLTFQVLNLAMIVFSALMIWKGLMFVTQSESPVVVVL 58
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BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Match: A0A7R9WQ46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ46_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.960e-17
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    7 EFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSESPVVV 165
            + IDKQV ELKKLW NKRQL FQ LNLAMIV SALMIWK LM +TKSESPVVV
Sbjct:   72 DMIDKQVLELKKLWANKRQLLFQLLNLAMIVFSALMIWKGLMFMTKSESPVVV 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114552.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ0_ECTSI5.130e-2591.23Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A835Z4U9_9STRA5.160e-2285.71Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6U5HKR9_9STRA3.360e-2082.46Signal peptidase I n=1 Tax=Corethron hystrix TaxID... [more]
A0A482SN16_9ARCH5.450e-1977.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1U989_9STRA3.000e-1878.95Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S2RVP6_9STRA5.730e-1876.79Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6V1QND9_HETAK5.980e-1877.19Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S2URX0_9STRA1.350e-1781.82Signal peptidase complex catalytic subunit SEC11A ... [more]
B7GDX7_PHATC1.760e-1780.00Signal peptidase I n=5 Tax=Naviculales TaxID=38748... [more]
A0A7R9WQ46_9STRA1.960e-1781.13Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114552contigH-elongata_contig114552:518..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D8LRQ0
Preferred nameSEC11C
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsCOG0681@1,KOG3342@2759
Ec32 ortholog descriptionSec11 homolog, catalytic subunit of the Signal Peptidase Complex
Ec32 orthologEc-12_000620.1
EC3.4.21.89,6.2.1.45
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.7692654-CDS-H-elongata_contig114552:517..6941622929661.7692654-CDS-H-elongata_contig114552:517..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114552 518..694 -
1691679110.018586-CDS-H-elongata_contig114552:517..6941691679110.018586-CDS-H-elongata_contig114552:517..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114552 518..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114552.1159.1prot_H-elongata_contig114552.1159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114552 518..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114552.1159.1

>prot_H-elongata_contig114552.1159.1 ID=prot_H-elongata_contig114552.1159.1|Name=mRNA_H-elongata_contig114552.1159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MVEFIDKQVTELKKLWYNKRQLAFQGLNLAMIVLSALMIWKTLMVVTKSE
SPVVVVLR*
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mRNA from alignment at H-elongata_contig114552:518..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114552.1159.1 ID=mRNA_H-elongata_contig114552.1159.1|Name=mRNA_H-elongata_contig114552.1159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig114552:518..694- (Himanthalia elongata Himel1 dioecious)
ATGGTAGAGTTCATAGACAAGCAGGTGACCGAGCTGAAGAAGCTGTGGTA
CAATAAAAGGCAGCTGGCGTTCCAGGGGCTAAACCTGGCGATGATTGTTC
TCTCCGCTCTCATGATCTGGAAGACGCTTATGGTGGTCACAAAATCCGAG
AGCCCAGTTGTCGTTGTCCTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig114552:518..694-

>mRNA_H-elongata_contig114552.1159.1 ID=mRNA_H-elongata_contig114552.1159.1|Name=mRNA_H-elongata_contig114552.1159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig114552:518..694- (Himanthalia elongata Himel1 dioecious)
ATGGTAGAGTTCATAGACAAGCAGGTGACCGAGCTGAAGAAGCTGTGGTA
CAATAAAAGGCAGCTGGCGTTCCAGGGGCTAAACCTGGCGATGATTGTTC
TCTCCGCTCTCATGATCTGGAAGACGCTTATGGTGGTCACAAAATCCGAG
AGCCCAGTTGTCGTTGTCCTCAGGTGAATGGTAGAGTTCATAGACAAGCA
GGTGACCGAGCTGAAGAAGCTGTGGTACAATAAAAGGCAGCTGGCGTTCC
AGGGGCTAAACCTGGCGATGATTGTTCTCTCCGCTCTCATGATCTGGAAG
ACGCTTATGGTGGTCACAAAATCCGAGAGCCCAGTTGTCGTTGTCCTCAG
GTGA
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