mRNA_H-elongata_contig114516.1156.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig114516.1156.1
Unique Name	mRNA_H-elongata_contig114516.1156.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.890e-26
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  109 RVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 163

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.800e-25
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  181 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 235

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.000e-25
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  276 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 330

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.310e-25
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  198 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 252

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.230e-25
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  223 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 277

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.840e-25
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   16 MQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            M++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:    1 MRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 50

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.120e-24
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  394 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 448

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BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.310e-24
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  495 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 549

[Close]

BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.320e-24
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  505 RVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 559

[Close]

BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.330e-24
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 RVEAFMQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR 165
            RV  FM++KGW LIWTPPYMPSFQPIELFWQHGK YVS NFE  RKM E+W QIR
Sbjct:  529 RVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 583

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot

BLAST of mRNA_H-elongata_contig114516.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JS64_9PHAE	6.890e-26	78.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZ92_9PHAE	1.800e-25	78.18	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KUM1_9PHAE	2.000e-25	78.18	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KF39_9PHAE	2.310e-25	78.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHE7_9PHAE	3.230e-25	78.18	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A6H5JH53_9PHAE	5.840e-25	80.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K024_9PHAE	1.120e-24	78.18	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	1.310e-24	78.18	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5JR41_9PHAE	1.320e-24	78.18	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]
D8LNM6_ECTSI	1.330e-24	78.18	DDE_3 domain-containing protein n=3 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig114516	contig	H-elongata_contig114516:1878..2042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	165
Cds size	150
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929661.5805216-UTR-H-elongata_contig114516:1877..1892	1622929661.5805216-UTR-H-elongata_contig114516:1877..1892	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig114516 1878..1892 +
1691679109.9708493-UTR-H-elongata_contig114516:1877..1892	1691679109.9708493-UTR-H-elongata_contig114516:1877..1892	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig114516 1878..1892 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929661.5974593-CDS-H-elongata_contig114516:1892..2042	1622929661.5974593-CDS-H-elongata_contig114516:1892..2042	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig114516 1893..2042 +
1691679109.9785504-CDS-H-elongata_contig114516:1892..2042	1691679109.9785504-CDS-H-elongata_contig114516:1892..2042	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig114516 1893..2042 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig114516.1156.1	prot_H-elongata_contig114516.1156.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig114516 1893..2042 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig114516:1878..2042+
coding sequence from alignment at H-elongata_contig114516:1878..2042+

protein sequence of mRNA_H-elongata_contig114516.1156.1

>prot_H-elongata_contig114516.1156.1 ID=prot_H-elongata_contig114516.1156.1|Name=mRNA_H-elongata_contig114516.1156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MQRKGWELIWTPPYMPSFQPIELFWQHGKAYVSFNFETGRKMHEIWEQIR

mRNA from alignment at H-elongata_contig114516:1878..2042+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig114516.1156.1 ID=mRNA_H-elongata_contig114516.1156.1|Name=mRNA_H-elongata_contig114516.1156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig114516:1878..2042+ (Himanthalia elongata Himel1 dioecious)
CGGGTAGAGGCGTTCATGCAGCGTAAGGGGTGGGAGTTAATTTGGACACC
CCCGTACATGCCGTCTTTCCAACCGATCGAGCTGTTTTGGCAGCATGGCA
AGGCATATGTCAGCTTCAATTTTGAGACGGGACGGAAGATGCATGAGATC
TGGGAGCAGATTCGT

Coding sequence (CDS) from alignment at H-elongata_contig114516:1878..2042+

>mRNA_H-elongata_contig114516.1156.1 ID=mRNA_H-elongata_contig114516.1156.1|Name=mRNA_H-elongata_contig114516.1156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig114516:1878..2042+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCGTAAGGGGTGGGAGTTAATTTGGACACCCCCGTACATGCCGTC
TTTCCAACCGATCGAGCTGTTTTGGCAGCATGGCAAGGCATATGTCAGCT
TCAATTTTGAGACGGGACGGAAGATGCATGAGATCTGGGAGCAGATTCGT
ATGCAGCGTAAGGGGTGGGAGTTAATTTGGACACCCCCGTACATGCCGTC
TTTCCAACCGATCGAGCTGTTTTGGCAGCATGGCAAGGCATATGTCAGCT
TCAATTTTGAGACGGGACGGAAGATGCATGAGATCTGGGAGCAGATTCGT