mRNA_H-elongata_contig11450.1153.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11450.1153.1
Unique NamemRNA_H-elongata_contig11450.1153.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: D7G749_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G749_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.880e-138
Identity = 190/211 (90.05%), Postives = 203/211 (96.21%), Query Frame = 2
Query:  386 MSHQQYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEGA 1018
            MSHQQYGKASYWD+RYTKDPEIFDWYQRYSGLKD ISQY+R DDNILM GCGNSRLSEDMFDDG+TT+TNIDVSRVV++QMIAR RDKPA+MW  MNVCAL+YPDESFN+VIDKGTLDSVLCGEGSTANV KMCMEISRVLKPNGVYF+CSYGVP+NRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVC+KGGT +EGA
Sbjct:    1 MSHQQYGKASYWDDRYTKDPEIFDWYQRYSGLKDWISQYVRKDDNILMVGCGNSRLSEDMFDDGFTTLTNIDVSRVVVEQMIARYRDKPALMWSMMNVCALDYPDESFNAVIDKGTLDSVLCGEGSTANVAKMCMEISRVLKPNGVYFICSYGVPDNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCKKGGTAEEGA 211          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7S2V7W5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7W5_9STRA)

HSP 1 Score: 358 bits (919), Expect = 2.040e-118
Identity = 163/206 (79.13%), Postives = 187/206 (90.78%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            QYGK SYWDERYTKDPE FDWYQRYSG+KD I+QYI  +DNILMAG GNSRLSE+MFDDGYTTITNID+SRVVI+QMI RCRDK A+ WQ MNV +LE+PDESF++VIDKGT+DS+LCGEGSTAN  KMC+E+SRVLKPNGV+F+ SYGVP NRLQYLENDDYSW V+ HTIPKPT++AAAVPDT+DA SVHY+YVC+KGGT +EG
Sbjct:    3 QYGKTSYWDERYTKDPEPFDWYQRYSGVKDLIAQYIHKEDNILMAGAGNSRLSEEMFDDGYTTITNIDISRVVIEQMIERCRDKAALTWQQMNVASLEFPDESFDAVIDKGTMDSILCGEGSTANCAKMCLEVSRVLKPNGVFFIVSYGVPENRLQYLENDDYSWQVSEHTIPKPTVTAAAVPDTKDANSVHYVYVCQKGGTGEEG 208          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7S2GCN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCN9_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.220e-111
Identity = 152/206 (73.79%), Postives = 184/206 (89.32%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            QYGK SYWDERYTKDPE FDWYQRYSGL + +++Y++ DD ILMAG GNSRLSEDM++DGY TITNID+SRVV+DQMI R +DK A+ +Q MNVC+LE+PDESF++V  KGT+D++LCGEGSTANV KMC E+SRVLK +GV+F+ SYGVP+NRLQYLEN+DYSWTV+VHT+PKPT+SA AVPDT+DA SVHY+YVC+KGGT DEG
Sbjct:    3 QYGKTSYWDERYTKDPEPFDWYQRYSGLSELLNKYVKKDDTILMAGAGNSRLSEDMYEDGYQTITNIDISRVVVDQMIDRYKDKAALTYQQMNVCSLEFPDESFDAVTAKGTMDAILCGEGSTANVAKMCQEVSRVLKAHGVFFIVSYGVPDNRLQYLENEDYSWTVSVHTVPKPTVSATAVPDTKDANSVHYIYVCQKGGTADEG 208          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A6U1K5P8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1K5P8_9STRA)

HSP 1 Score: 337 bits (865), Expect = 2.770e-110
Identity = 148/206 (71.84%), Postives = 183/206 (88.83%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            QYGK SYWDERYTKDPE FDWYQRYSG+++ + +Y++ DD +LMAGCGNSRLSEDMF+DG+  I+N+D+SRVVIDQM  + +DKPA+ +Q MNVC+LE+PDESF++VI KGT+D++LCGEGSTANV KMCME+SRVLKP+G+ FV SYGVP+NR+QYLEN+DYSWTVT HT+PKPT+SA AVPDT+DA SVHY+YVC KGG  +EG
Sbjct:    3 QYGKTSYWDERYTKDPEPFDWYQRYSGIQELLQKYVKKDDAVLMAGCGNSRLSEDMFEDGFANISNVDISRVVIDQMGDKYKDKPALTFQQMNVCSLEFPDESFDAVIVKGTMDAILCGEGSTANVAKMCMEVSRVLKPSGILFVVSYGVPDNRMQYLENEDYSWTVTTHTVPKPTVSATAVPDTKDANSVHYIYVCAKGGNAEEG 208          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A835ZP38_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP38_9STRA)

HSP 1 Score: 333 bits (853), Expect = 9.410e-108
Identity = 146/204 (71.57%), Postives = 183/204 (89.71%), Query Frame = 2
Query:  404 GKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            GK SYWD+RYTKDPE FDWYQRYSG+KD ++  ++++DN+LM GCGNSRLSEDM +DG+T+ITNID+SRVVIDQMI R +DKPA++WQ MN  ALEYPDESF++ +DKGTLDS++CGEG++ANV KMCME+SRVLKPNGVY V SYG P++RL+YL++DDYSWTV+V T+PKP ISAAA+PDT+DA +VHY+Y+CRKGGT +EG
Sbjct:   52 GKVSYWDDRYTKDPEPFDWYQRYSGIKDLVAAQMKHEDNVLMLGCGNSRLSEDMLEDGFTSITNIDISRVVIDQMIERHKDKPALVWQRMNAMALEYPDESFDAAVDKGTLDSLMCGEGASANVAKMCMEVSRVLKPNGVYLVISYGAPDSRLKYLQSDDYSWTVSVATLPKPAISAAAIPDTKDASAVHYVYLCRKGGTAEEG 255          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7S2AN98_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AN98_9STRA)

HSP 1 Score: 329 bits (844), Expect = 3.990e-107
Identity = 146/206 (70.87%), Postives = 179/206 (86.89%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            QYGK SYWDERYTKDPE FDWYQRYSG+ +TI +YI+ DD ILMAG GNSRLSEDM++DGY TITNID+SRVV+DQM+ + RDK  + +Q MNVC+LE+PDESF++V+ KGT+D++LCGEGSTANV KMC E+SRVLK +GV+ + SYGVP+NRLQYL+N+DYSW VT  T+ KPT+SA AVPDT+DA SVHY+Y+C+KGGT DEG
Sbjct:    3 QYGKTSYWDERYTKDPEPFDWYQRYSGMAETIQKYIKKDDQILMAGAGNSRLSEDMYEDGYNTITNIDISRVVVDQMVDKYRDKTPLPYQQMNVCSLEFPDESFDAVVAKGTMDAILCGEGSTANVAKMCQEVSRVLKVHGVFIIVSYGVPDNRLQYLDNEDYSWMVTTQTVAKPTVSATAVPDTKDANSVHYIYICQKGGTADEG 208          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7S3M8V2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8V2_9STRA)

HSP 1 Score: 323 bits (829), Expect = 7.430e-105
Identity = 148/207 (71.50%), Postives = 175/207 (84.54%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDD-YSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDEG 1015
            QYGK SYWDERYTKDPE FDWYQRYSG++D I+QY++ +D ILMAG GNSRL+EDMF+DGY+TITNIDVSRVVIDQ I R +DKP + WQ MNV AL++PDE+F+ VI K TLD+VLCGEGSTANV K C E+SRVLKP GV+F+ SYGVP+NRL YLE +D YSW V+VHT+PKPT+SAAAVP   DA  VHY+Y+C KGGT +EG
Sbjct:    3 QYGKTSYWDERYTKDPEPFDWYQRYSGIRDFINQYVKREDVILMAGAGNSRLTEDMFEDGYSTITNIDVSRVVIDQQIERYKDKPTLQWQQMNVTALDFPDETFDVVIAKATLDAVLCGEGSTANVAKFCSEVSRVLKPTGVFFIVSYGVPDNRLNYLEKEDLYSWNVSVHTVPKPTVSAAAVPSAEDANGVHYIYICSKGGTAEEG 209          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7R9UCD5_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCD5_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.390e-103
Identity = 146/219 (66.67%), Postives = 179/219 (81.74%), Query Frame = 2
Query:  356 SQGSRVLS*KMSHQQYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVDE 1012
            S   R  +  M+  QYGK  YWDERYTKDPE FDWYQRYSGLKDT+ Q+++ +D+ILMA CG+SRL+EDM++DG+T I NID S+VVI+QM  RC DKPA+ WQ MNV ALE+PDESF++VI K T+D++LCGEGSTANV KMC E+SRVLKP+GV+F+ SYGVP+NRL YLE +DY W VTVHTI KPT+SA AVPDT+DA SVHY+YVC K G  ++
Sbjct:   72 SASFREAAVPMAAAQYGKLQYWDERYTKDPESFDWYQRYSGLKDTMDQFMKKEDSILMASCGSSRLTEDMYEDGFTNIVNIDASKVVIEQMTQRCEDKPALTWQVMNVMALEFPDESFDAVIAKATMDAILCGEGSTANVAKMCTEVSRVLKPSGVFFIVSYGVPDNRLNYLEQEDYGWQVTVHTIAKPTVSATAVPDTKDANSVHYIYVCEKNGPRED 290          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A7S3K5J8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5J8_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.180e-98
Identity = 145/209 (69.38%), Postives = 175/209 (83.73%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKP-AMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAA--VPDTRDAESVHYLYVCRKG--GTVD 1009
            QYGKASYWD+RY KDPE FDWYQRYSGL + +S+YI+ DD ILMAGCGNSR++EDM +DGYT+ITNIDVSRVVIDQM  + +DK    ++Q MNVC LE+PDESF+++I KG +D++LCGEGSTANV KMCME SRVLKPNGV F+ SYG P+NRLQYL+N+DYSW V+ HT+PKPT+SAA+    DT DA SVHY+YVC+KG  GT D
Sbjct:    3 QYGKASYWDDRYNKDPEAFDWYQRYSGLSEIMSKYIKRDDAILMAGCGNSRMTEDMIEDGYTSITNIDVSRVVIDQMKEKYKDKKDTFIYQIMNVCGLEFPDESFDAIIAKGVMDAILCGEGSTANVAKMCMEASRVLKPNGVLFIVSYGFPDNRLQYLDNEDYSWKVSTHTVPKPTVSAASGVANDTADASSVHYIYVCQKGAGGTDD 211          
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Match: A0A067CRN2_SAPPC (Methyltransf_11 domain-containing protein n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRN2_SAPPC)

HSP 1 Score: 299 bits (766), Expect = 1.970e-95
Identity = 134/204 (65.69%), Postives = 164/204 (80.39%), Query Frame = 2
Query:  398 QYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAGCGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCALEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVCSYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYVCRKGGTVD 1009
            QYGKASYWDERYTKD E FDWYQRY+GLKD + QY++  DN+LM+G GNSRL+E+M +DG+ TI NIDVS+VV+DQM  +      M WQ MNVC+L + DE+F+SV DKGT+DS+LCGEGSTANV KMC E+ RVLKPNGV+F+ SYGVP+NRL YLEN++  W VTVHT+PKPT+SA  V D  DA +VHY+YVC+KG   D
Sbjct:    3 QYGKASYWDERYTKDAEQFDWYQRYAGLKDLVLQYLKKTDNVLMSGAGNSRLTEEMMNDGFQTIMNIDVSQVVVDQMAKKYEGHEGMQWQQMNVCSLSFSDETFDSVFDKGTMDSILCGEGSTANVAKMCQEVYRVLKPNGVFFIVSYGVPDNRLSYLENNELHWKVTVHTVPKPTVSAVQVTDAADANAVHYIYVCQKGVKAD 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11450.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G749_ECTSI1.880e-13890.05Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2V7W5_9STRA2.040e-11879.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GCN9_9STRA1.220e-11173.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1K5P8_9STRA2.770e-11071.84Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A835ZP38_9STRA9.410e-10871.57S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2AN98_9STRA3.990e-10770.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3M8V2_9STRA7.430e-10571.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9UCD5_9STRA1.390e-10366.67Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3K5J8_9STRA1.180e-9869.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A067CRN2_SAPPC1.970e-9565.69Methyltransf_11 domain-containing protein n=10 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11450contigH-elongata_contig11450:1661..5671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.5
Seed ortholog evalue9.9e-112
Seed eggNOG ortholog2880.D7G749
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-01_011050.1
Exons4
Model size1759
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11450.1153.1prot_H-elongata_contig11450.1153.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11450 2399..5286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.2478552-UTR-H-elongata_contig11450:1660..23981622929661.2478552-UTR-H-elongata_contig11450:1660..2398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11450 1661..2398 -
1691679109.836341-UTR-H-elongata_contig11450:1660..23981691679109.836341-UTR-H-elongata_contig11450:1660..2398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11450 1661..2398 -
1622929661.3550446-UTR-H-elongata_contig11450:5286..56711622929661.3550446-UTR-H-elongata_contig11450:5286..5671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11450 5287..5671 -
1691679109.8859794-UTR-H-elongata_contig11450:5286..56711691679109.8859794-UTR-H-elongata_contig11450:5286..5671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11450 5287..5671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.2649703-CDS-H-elongata_contig11450:2398..25541622929661.2649703-CDS-H-elongata_contig11450:2398..2554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 2399..2554 -
1691679109.8451433-CDS-H-elongata_contig11450:2398..25541691679109.8451433-CDS-H-elongata_contig11450:2398..2554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 2399..2554 -
1622929661.2829235-CDS-H-elongata_contig11450:2949..31721622929661.2829235-CDS-H-elongata_contig11450:2949..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 2950..3172 -
1691679109.8523684-CDS-H-elongata_contig11450:2949..31721691679109.8523684-CDS-H-elongata_contig11450:2949..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 2950..3172 -
1622929661.2986221-CDS-H-elongata_contig11450:3970..41461622929661.2986221-CDS-H-elongata_contig11450:3970..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 3971..4146 -
1691679109.8597262-CDS-H-elongata_contig11450:3970..41461691679109.8597262-CDS-H-elongata_contig11450:3970..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 3971..4146 -
1622929661.3235657-CDS-H-elongata_contig11450:5205..52861622929661.3235657-CDS-H-elongata_contig11450:5205..5286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 5206..5286 -
1691679109.8751125-CDS-H-elongata_contig11450:5205..52861691679109.8751125-CDS-H-elongata_contig11450:5205..5286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11450 5206..5286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11450.1153.1

>prot_H-elongata_contig11450.1153.1 ID=prot_H-elongata_contig11450.1153.1|Name=mRNA_H-elongata_contig11450.1153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MSHQQYGKASYWDERYTKDPEIFDWYQRYSGLKDTISQYIRNDDNILMAG
CGNSRLSEDMFDDGYTTITNIDVSRVVIDQMIARCRDKPAMMWQTMNVCA
LEYPDESFNSVIDKGTLDSVLCGEGSTANVTKMCMEISRVLKPNGVYFVC
SYGVPNNRLQYLENDDYSWTVTVHTIPKPTISAAAVPDTRDAESVHYLYV
CRKGGTVDEGA*
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mRNA from alignment at H-elongata_contig11450:1661..5671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11450.1153.1 ID=mRNA_H-elongata_contig11450.1153.1|Name=mRNA_H-elongata_contig11450.1153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4011bp|location=Sequence derived from alignment at H-elongata_contig11450:1661..5671- (Himanthalia elongata Himel1 dioecious)
AAACAGACACTGAGCACAAGTAAACGTTTTCAATCGAATTGCTAGAAACC CACAGGCGAAAAAAGTAGCGGCAGCCTAAGGTACACTCTCCGATTCACGA CTACTTCTACGCGGCCTGTTTTTCCGTTAATTCATTGGCATATAAGAAGG CTAAATATAGAGGCCTCGAGCTGCGGGGAGGAAATTCGAATTTTCGGCAT CATCTCCACTAAATATTATACGATAGAGCTAGCCCTCGAACTGTGGGGGT GGTAAGACGAATTTGCGGCACCACCTCCACAAAACCTAATCCTTCGAGCC GTGGATCGCAACAACGCGTGGTGTCGCTGTGGATAATTCTTTCGAATATC TCCTTAGCCAGGGTTCGCGGGTACTATCGTGAAAAATGTCACATCAGCAG TACGGCAAGGCATCATACTGGGATGAACGCTACACGAAGGATCCGGAGAT CTTTGACTGGTATCAGGTGAACTTAAAGTTATAATACATTATTTAATATT ATACATAAAAGTGTGAAAAGTGTGATACTCGTAGTACAAGAATGTCGTGT CAACTTGTAACTGCCCACTATGTTGCCTCCCTTTCTTGTATACGACCACA GCTGTAGAGCCAACATGGAAACAGCGGTCATAGCTCGTAGTACGACTAGT GTACGCCATAAGCTTTCGCTGGAATGCTCCCACTCGGATCACCCCAATTA TTATTTATTTCGAAGCAGCAGTATATTAATTGTGGGCTTCGCCGAAAATC ATACCGGTACTTTATGTGGCTTCTTCTCTCTGAACCCAGAAACCAGGCAG CTATATTTGTACTCTCCTGACAGGCAATATCATGCATAGTCCACAGTCAG CGCTGGTTCTTACAGCTCTAATTTTCAGAGCATCCTTGCAGAAAGACTTT TCTACACGAAGAGTCCGAATCATCCAAGGATAGTAATTAGAACCTGAATT CTTCAAAGACGTCGCAGTACGTAGGTCAACTCCTGATATATCTATTAATT AATTAATTAATGCCATGATATCTACTGTCAATCGTAAGAGGCTGATTTGA TGTCGTAACGCGTGCAAGATCTGGTCGCGGGCGTGGATATTTGCCAGCGG TGCTTGTATCTCGCCTGCCGCCTGCGTCTGCTTCAGTTTATCCCCAACGC ATCGTCCCACACCTCTGAATACCTAGCCAAAGCTTAACGTTTGACTCGCG GGAAATTATCGCGAAGGCCGATATATACCCAGATCCCGCCTCGCAAGGGA GAAAGTCAGAGGTATCTTTATTGAAGTAGCTATTTCAGGTTCAAGAAACG GTAAGGTTTAAAACCAGGTTTTCGGTCGCTAAATCCGCAGTAAACTGTCC CCAGCATCACAAGTTGCAAGCTTTCCCCACCAGAGCACCAGGTACTGGAA GGAATGTCCCGTCCTTTGCGACCGCCTCAATCATTTCACCCTGTGGACGA CACGAAAAAACCCCAAAAAAACTCTGCGACGTGTGCTCCGTATCTTGTAA CCGACTCGCGACCTCCCGCACGCAGCGCTATTCCGGTCTAAAGGACACTA TATCCCAGTACATTCGTAACGACGACAATATACTCATGGCTGGATGTGGC AACTCGAGACTGAGCGAGGACATGTTCGACGACGGATACACCACGATCAC CAACATCGATGTGTCGAGGGTTGTCATTGATCAAATGATCGCGAGATGCA GGTCAGCAAAGGAGCGTGTGTTCAATCTTTGAATTGCGCATTTCAGCTGC AATACCGACCAAGCATTTTCCCCATGAGTCTGGGCATACGAATGGATGGG ATGTCTCTATTGGCGTTATTTGCCTGCTTTTGTACGTTTTGTGTAAAACT CTGGAAACGTTGAAGCCATGCGACCACCCTAACATTGTTCCCATCAGTCG TGTTACGAGTATACGCCTTAGAGCACTCGTGCTGTCTTTGTCGGAAGAAT CCGGCGGGATCGCGTAGCTTGGTTCTAGACTTGGTCACGATAAGGGCCAG GACAAGTTGGAGTGAAGTTTGACTTTGCACCCGTGTAACCGTTTCACGAC ACTCTTATTTATCATGCACGTGTTGACGTCTTGTAATGGCGGCAGACATG GTGCCATCGTGCTCCGGAAGCCCGACACTAAATAGCTAGAGTATGACATC AAAGGGTACGAGCGTACAGGGTCAACAAGACGGCTCGAACCAGCTAAAAA ATAGAAGGGTACTAAGGAAACATGCCAACAGCACCAACAAATTCCAAGCA CTTGCTTCCCAAGTGCCCTTGTACCTGCGTACTGATATGGACATTGTGCC TCGGCGCGCGGGAGCTCCCCATCGAATACCCGCTTCGATTTGAAGTAAAT TTCCCCCGCGGCGCCAAGATTGTTTTTCACGCTCTGTAATCATACGAGGC ATAACGAGGCGTTATGCTCAATGGGACGTCGATGTGGCCAAACGAAAGAC ATGATCCACCACCTTTCCACTATTCCTTTCCGTGTTGCGGTTGTTTCAGG GACAAGCCGGCCATGATGTGGCAGACAATGAACGTGTGCGCCCTCGAATA TCCCGACGAATCCTTCAACTCGGTGATCGACAAGGGAACCTTAGATTCGG TCCTTTGCGGGGAGGGATCGACAGCGAACGTCACAAAGATGTGCATGGAA ATCTCTCGGGTGCTCAAGCCCAATGGCGTGTACTTTGTCTGCTCTTACGG GGTGCCTAACAACCGTCTTCAGGTGCGTTTAAATGTAGTGACATCGCTAG TGCTTGGTGTTAATTATGGGAGCGGCATCCTGTTGGGGCGTGTTTAATAC CGAGTGCTGGGGCACGTGGCTGCTATCGTTGCACCGTACTACAAAATATG GTGGGGTATGTGGCAAGGCGTGCCCGAAAGCTGCTCCCGCCGCGAGAAAT TTTGGAGCGGCTAGTGTCCCGCTCGAGAGAAAGTGTTCAAGCCGCGGGGG GCGTTGTCCTCCTCGGAGAGCGACCGATGCCGCTGCACAAAGAGTACATC GCAAGCAATGTCGGGGCAGCATTTTCGCACACTCCGCAGTAAAAAATGCC GCCCGATCCCTACACGCAGAGAGTATTCGCTGTCCCTCCCTTCAAATGCC CCCCTGCCACACGACAGTACCTAGAAAACGACGACTACAGCTGGACGGTG ACGGTTCACACGATCCCTAAACCTACGATTTCAGCCGCAGCAGTGCCGGA CACTCGCGACGCCGAGAGCGTGCACTACCTCTACGTTTGCAGGAAAGGCG GGACCGTGGACGAGGGGGCATGACCCCGGTCCTTCCATCACCCCCAGCGT GTACACTCATGGTTTTAATGCGCTCCGATGTTCCGCCTTGAACGCCGGAA GCTCGCTGCGCAGAGTGAAGGTCTTCTCCTTCGCTCATTGTCGATATTGC TATTGACGTTTTATTTTACTGTACTTTGATGCGCAAGATGAATGGGGAGA AACATTCGTCGACAATTGCATGCTGAGGAAAATAAAGAAAAGCAACAAGA AGAAAAAACGTCCGTGGACTTGCCTATGATGCGTTGTCTTGAATGACGTG CGTGAGAAAAGGCAGAGCGATTTCGCCCCCAAGCAGCAACCGCGATTGTT TTTTATTTAATATTATTTTTCGTTCGTTGAATGGAGCATTGTTAAGAGTT GGAATTGAGACGTGTAGCTTTTCGTCTCGAAAACGTTTGACTGGTTTTGA TGGTGACTGCTCTCTTGCGAACAAGGACTGATGTTGAAACTAGACGGAGC GTGGACGCTGCGTGCGGTACTGCCATATTTATCGTGGTTACGCTAATTGC CGTTTGTTTGTTTTGGCGGTTGAGATCGTTTGAGATCGTTTGGTTTAGAT GGCCCAGAGTCAGAGTCAAATATTCCGTATATTCTGCATACTCCGTACAA TTCGATTAGAAACGAAACAGAAAAGCACCTCTAAGTCCTCTAGTGGAGAA AGCAGACCAACTAACATCGAGCGATGGAGGCGATGTATACACATATACCC GGAGGAGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig11450:1661..5671-

>mRNA_H-elongata_contig11450.1153.1 ID=mRNA_H-elongata_contig11450.1153.1|Name=mRNA_H-elongata_contig11450.1153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig11450:1661..5671- (Himanthalia elongata Himel1 dioecious)
ATGTCACATCAGCAGTACGGCAAGGCATCATACTGGGATGAACGCTACAC
GAAGGATCCGGAGATCTTTGACTGGTATCAGATGTCACATCAGCAGTACG
GCAAGGCATCATACTGGGATGAACGCTACACGAAGGATCCGGAGATCTTT
GACTGGTATCAGCGCTATTCCGGTCTAAAGGACACTATATCCCAGTACAT
TCGTAACGACGACAATATACTCATGGCTGGATGTGGCAACTCGAGACTGA
GCGAGGACATGTTCGACGACGGATACACCACGATCACCAACATCGATGTG
TCGAGGGTTGTCATTGATCAAATGATCGCGAGATGCAGCGCTATTCCGGT
CTAAAGGACACTATATCCCAGTACATTCGTAACGACGACAATATACTCAT
GGCTGGATGTGGCAACTCGAGACTGAGCGAGGACATGTTCGACGACGGAT
ACACCACGATCACCAACATCGATGTGTCGAGGGTTGTCATTGATCAAATG
ATCGCGAGATGCAGGGACAAGCCGGCCATGATGTGGCAGACAATGAACGT
GTGCGCCCTCGAATATCCCGACGAATCCTTCAACTCGGTGATCGACAAGG
GAACCTTAGATTCGGTCCTTTGCGGGGAGGGATCGACAGCGAACGTCACA
AAGATGTGCATGGAAATCTCTCGGGTGCTCAAGCCCAATGGCGTGTACTT
TGTCTGCTCTTACGGGGTGCCTAACAACCGTCTTCAGGGACAAGCCGGCC
ATGATGTGGCAGACAATGAACGTGTGCGCCCTCGAATATCCCGACGAATC
CTTCAACTCGGTGATCGACAAGGGAACCTTAGATTCGGTCCTTTGCGGGG
AGGGATCGACAGCGAACGTCACAAAGATGTGCATGGAAATCTCTCGGGTG
CTCAAGCCCAATGGCGTGTACTTTGTCTGCTCTTACGGGGTGCCTAACAA
CCGTCTTCAGTACCTAGAAAACGACGACTACAGCTGGACGGTGACGGTTC
ACACGATCCCTAAACCTACGATTTCAGCCGCAGCAGTGCCGGACACTCGC
GACGCCGAGAGCGTGCACTACCTCTACGTTTGCAGGAAAGGCGGGACCGT
GGACGAGGGGGCATGATACCTAGAAAACGACGACTACAGCTGGACGGTGA
CGGTTCACACGATCCCTAAACCTACGATTTCAGCCGCAGCAGTGCCGGAC
ACTCGCGACGCCGAGAGCGTGCACTACCTCTACGTTTGCAGGAAAGGCGG
GACCGTGGACGAGGGGGCATGA
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