mRNA_H-elongata_contig114440.1150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114440.1150.1
Unique NamemRNA_H-elongata_contig114440.1150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 8.100e-35
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+SEEDL+ +++ W++T+KR+TVKD  NYI+  LF NE GDL RLLS YQ+  P+SM+TTHSWM ALGCKYERATKSFYTDGHE+ DVV Y G YI++
Sbjct:  299 IMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 395
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.320e-34
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+SEEDL+ ++I W++ +KR+TVKD  NYI+  LF NE GDL RLLS YQ+  P+SM+TTHSWM ALGCKYERATKSFYTDGHE+ DVV Y G YI++
Sbjct:  159 IMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 255
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 5.950e-34
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+SEEDL+ ++I W++T+KR+TVKD  NYI+  LF  E GDL RLLS YQ+  P+SM+TTHSWM ALGCKYERATKSFYTDGHE+ DVV Y G YI++
Sbjct:  237 IMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 333
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.100e-33
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+SEED + ++I W++T+KR+TVKD  NYI+  LF N+ GDL RLLS YQ+  P+SM+TTHSWM ALGCKYERATKSFYTDGHE+ DVV Y G YI++
Sbjct:  414 IMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 510
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.310e-33
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+SEEDL+ ++I W++T+KR+TVKD  NYI+  LF +E GDL  LLS YQ+  P+SMSTTHSWM ALGCKYE+ATKSFYTDGHE   VV Y G YI++
Sbjct:   71 IMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFASEIGDLSTLLS-YQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDV 167
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.010e-33
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI 291
            I+S+EDL+ ++I W++T+KR+TVKD  NYI+  LF NE GDL RLLS +Q+  P+SM TTHSW+ ALGCKYERATKSFYTDGHE+ DVV Y G YI++
Sbjct:  257 IMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-HQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 353
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.180e-33
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHG 276
            I+SEEDL+  +I W++T+KR+TVKD  NYI+  LF NE GDL RLLS YQ+  P+SM+TTHSWM ALGCKYERATKSFYTDGHE+ DVV Y G
Sbjct:  348 IMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRG 439
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.500e-27
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYI 285
            I+SEEDL+  ++ W+ ++ R T+KD   YI+G L +++  DL RL   YQ+  P+SMSTTHSWM  LGC+YERATKSFYTD HE+ +VVEY G+YI
Sbjct:  345 IMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRL-HAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYI 439
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.020e-26
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:   10 EEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETGDLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYI 285
            +EDL+ +++ W+ +  RVT++D   YI+G L +++  DL RL   YQ+  P+SMSTTHSWM  LGCKYERATKSFYTD HE+ +VVEY G+YI
Sbjct:   13 QEDLKSELLAWMISPPRVTIEDVCKYINGPLLQDDKEDLSRL-HAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYI 104
[Close]
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.430e-23
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 ILSEEDLQQDIIGWLKTRKRVTVKDT-NYIDGTLFKNETG-DLDRLLSTYQLTFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYI 285
            I+SEEDL+  ++ W+ ++ R T+K+   YI+G L +++   DL RL   YQ+  P+SMST HSWM  LGC+YER TKSFYTD HE+ +VVEY G+YI
Sbjct:  298 IMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDDKEEDLSRL-HAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYI 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114440.1150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JMT5_9PHAE8.100e-3566.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE2.320e-3466.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE5.950e-3466.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7P7_9PHAE1.100e-3365.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE1.310e-3364.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE5.010e-3364.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE5.180e-3368.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE4.500e-2756.25Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE5.020e-2655.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE1.430e-2352.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114440contigH-elongata_contig114440:1204..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.9608445-CDS-H-elongata_contig114440:1203..14941622929660.9608445-CDS-H-elongata_contig114440:1203..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114440 1204..1494 +
1691679109.7674718-CDS-H-elongata_contig114440:1203..14941691679109.7674718-CDS-H-elongata_contig114440:1203..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114440 1204..1494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114440.1150.1prot_H-elongata_contig114440.1150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114440 1204..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114440.1150.1

>prot_H-elongata_contig114440.1150.1 ID=prot_H-elongata_contig114440.1150.1|Name=mRNA_H-elongata_contig114440.1150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ILSEEDLQQDIIGWLKTRKRVTVKDTNYIDGTLFKNETGDLDRLLSTYQL
TFPMSMSTTHSWMKALGCKYERATKSFYTDGHERLDVVEYHGDYINI
back to top

mRNA from alignment at H-elongata_contig114440:1204..1494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114440.1150.1 ID=mRNA_H-elongata_contig114440.1150.1|Name=mRNA_H-elongata_contig114440.1150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig114440:1204..1494+ (Himanthalia elongata Himel1 dioecious)
ATCTTGTCGGAAGAGGACCTGCAGCAAGACATCATCGGGTGGTTGAAAAC
GCGGAAGCGTGTCACCGTCAAGGACACCAACTACATCGACGGCACTTTGT
TCAAAAACGAAACCGGTGATCTGGACAGACTTCTTTCGACGTACCAACTG
ACCTTTCCCATGTCCATGTCCACGACCCACTCGTGGATGAAAGCATTGGG
GTGCAAGTACGAGCGGGCCACGAAATCGTTCTACACTGACGGCCACGAGA
GGCTGGACGTGGTTGAGTACCACGGCGACTACATCAATATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig114440:1204..1494+

>mRNA_H-elongata_contig114440.1150.1 ID=mRNA_H-elongata_contig114440.1150.1|Name=mRNA_H-elongata_contig114440.1150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig114440:1204..1494+ (Himanthalia elongata Himel1 dioecious)
ATCTTGTCGGAAGAGGACCTGCAGCAAGACATCATCGGGTGGTTGAAAAC
GCGGAAGCGTGTCACCGTCAAGGACACCAACTACATCGACGGCACTTTGT
TCAAAAACGAAACCGGTGATCTGGACAGACTTCTTTCGACGTACCAACTG
ACCTTTCCCATGTCCATGTCCACGACCCACTCGTGGATGAAAGCATTGGG
GTGCAAGTACGAGCGGGCCACGAAATCGTTCTACACTGACGGCCACGAGA
GGCTGGACGTGGTTGAGTACCACGGCGACTACATCAATATCATCTTGTCG
GAAGAGGACCTGCAGCAAGACATCATCGGGTGGTTGAAAACGCGGAAGCG
TGTCACCGTCAAGGACACCAACTACATCGACGGCACTTTGTTCAAAAACG
AAACCGGTGATCTGGACAGACTTCTTTCGACGTACCAACTGACCTTTCCC
ATGTCCATGTCCACGACCCACTCGTGGATGAAAGCATTGGGGTGCAAGTA
CGAGCGGGCCACGAAATCGTTCTACACTGACGGCCACGAGAGGCTGGACG
TGGTTGAGTACCACGGCGACTACATCAATATC
back to top