mRNA_H-elongata_contig114306.1145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114306.1145.1
Unique NamemRNA_H-elongata_contig114306.1145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: D7G6M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M4_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 6.740e-42
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLECNTYFYDP 297
            +AYS AD RVK LAYV+K WAKRR VNNASEGTLSSYGYLLCL+HFLQTRNPPVVPNLQALPPDW G    G     +PVVMT QP DGL+C+TYFYDP
Sbjct:  422 KAYSVADPRVKELAYVLKRWAKRRWVNNASEGTLSSYGYLLCLLHFLQTRNPPVVPNLQALPPDWAGEPLHGVPR--LPVVMTKQPTDGLDCDTYFYDP 518
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A835YMU6_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMU6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.440e-31
Identity = 62/101 (61.39%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNG--LTPPGFSNHGMPVVMTLQPIDGLECNTYFYDP 297
            + Y+ AD RV+ LA+VVKHWAK+R +N  SEGTLSSYGYLL L+H+LQTRNPPVVPNLQALPPDW G     P     G+P   T    DG  CNTYF+ P
Sbjct: 1539 RTYALADPRVRPLAFVVKHWAKQRQINCPSEGTLSSYGYLLLLLHYLQTRNPPVVPNLQALPPDWPGPPAAAPTRPGRGLPERSTAHASDGRLCNTYFFVP 1639
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A6V1RBI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBI5_HETAK)

HSP 1 Score: 107 bits (268), Expect = 5.330e-26
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    4 AYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTR-NPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLECNTYFYDP 297
            AYS  D RV+ LA+V+KHWA+RR +N A+EGTLSSYGYLL L+ FLQ R   PV+PNLQALPP W      G     +P V T Q  DG   NTYFY P
Sbjct:  111 AYSRVDARVRALAHVIKHWARRRRMNCAAEGTLSSYGYLLLLIQFLQQRPGAPVLPNLQALPPGWEQ----GGPARPLPTVETPQLADGRPANTYFYTP 205
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A7S2CLX1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLX1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.980e-26
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    4 AYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPID-GLECNTYFYD 294
            AY+  D RVK LA+ VKHWA+RR +N+ S+GTLSSYGYLLC++HFLQTR+PPV+PNLQ  P     L   G  +   P V+   P++ G+ C+TYFYD
Sbjct:  306 AYARIDPRVKALAFTVKHWARRRHINSPSQGTLSSYGYLLCVIHFLQTRSPPVIPNLQRPPESIIALQQRG--DRKQPQVLVPHPVEQGVICDTYFYD 401
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A0N7L3T9_PLAHL (S-M checkpoint control protein CID1 and related nucleotidyltransferases n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3T9_PLAHL)

HSP 1 Score: 106 bits (265), Expect = 9.580e-25
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLE-----CNTYFYDP 297
            +AY++AD RV+ LAYV+KH+ K+R +N A+EGTLSSYGYLL L+HFLQ +NPPV+P LQ LPP+W     P  S   +P V+   P D LE       TYFYDP
Sbjct:  657 RAYASADPRVRSLAYVLKHFVKQRRMNCAAEGTLSSYGYLLMLIHFLQRQNPPVLPVLQMLPPNW-----PDESCDNLPSVICRGPSDELEGLADGIETYFYDP 755
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A3M6VEG2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEG2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.240e-24
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLECNT---------YFYDP 297
            +AY++AD RV++LAYV+K + K+R +N A+EGTLSSYGYLL L+HFLQ +NPPV+P LQALPP+W     P      +P V+   P D L+ +T         YFYDP
Sbjct:  823 RAYASADPRVRMLAYVIKRFVKQRRMNCAAEGTLSSYGYLLLLIHFLQRQNPPVLPVLQALPPNW-----PNEPREELPSVVCRGPSDELDSSTSNDTSGIETYFYDP 925
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A6A3SY79_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SY79_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.240e-24
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLECN---------TYFYDP 297
            ++Y++AD RV++LAYV+K + K+R +N A+EGTLSSYGYLL L+HFLQ +NPPV+P LQALPP+W     P      +P V+   P D L+ N         TYFYDP
Sbjct:  821 RSYASADPRVRMLAYVIKRFVKQRRMNCAAEGTLSSYGYLLLLIHFLQRQNPPVLPVLQALPPNW-----PDEPKEKLPSVLCRGPSDELDPNAADGHSGIETYFYDP 923
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A7S1C3P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3P2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.330e-24
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLE---CNTYFYDP 297
            +AY+ AD RV+ LAYV+KHWA RR +NN S  TLSSYGYLL L+H L  R+ PVVP L ALPPDWNG   P F        +   P+   E    NTYFYDP
Sbjct:  247 RAYAQADARVRPLAYVLKHWASRRQINNPSGATLSSYGYLLLLLHHLMRRSTPVVPCLAALPPDWNG---PEFVFDTPESALPSIPVPNAEKRLYNTYFYDP 345
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: D0NHG9_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NHG9_PHYIT)

HSP 1 Score: 103 bits (258), Expect = 8.480e-24
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMT------LQPIDGLE-CNTYFYDP 297
            +AY++AD RV++LAYV+K + K+R +N A+EGTLSSYGYLL L+HFLQ ++PPV+P LQALPP+W     P   +  +P V++      L P DG    +TYFYDP
Sbjct:  741 RAYASADPRVRMLAYVLKQFVKQRRMNCAAEGTLSSYGYLLLLIHFLQRQDPPVLPVLQALPPNW-----PELPSEPLPTVLSRGPSEELDPSDGKSGIDTYFYDP 841
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BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Match: A0A833W152_PHYIN (Cid1 family poly A polymerase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W152_PHYIN)

HSP 1 Score: 103 bits (258), Expect = 8.490e-24
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTRNPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMT------LQPIDGLE-CNTYFYDP 297
            +AY++AD RV++LAYV+K + K+R +N A+EGTLSSYGYLL L+HFLQ ++PPV+P LQALPP+W     P   +  +P V++      L P DG    +TYFYDP
Sbjct:  757 RAYASADPRVRMLAYVLKQFVKQRRMNCAAEGTLSSYGYLLLLIHFLQRQDPPVLPVLQALPPNW-----PELPSEPLPTVLSRGPSEELDPSDGKSGIDTYFYDP 857
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114306.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6M4_ECTSI6.740e-4276.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMU6_9STRA4.440e-3161.39WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6V1RBI5_HETAK5.330e-2657.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CLX1_9STRA7.980e-2655.10Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A0N7L3T9_PLAHL9.580e-2554.81S-M checkpoint control protein CID1 and related nu... [more]
A0A3M6VEG2_9STRA6.240e-2450.93Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6A3SY79_9STRA6.240e-2450.93Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A7S1C3P2_9STRA6.330e-2454.90Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D0NHG9_PHYIT8.480e-2451.89Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A833W152_PHYIN8.490e-2451.89Cid1 family poly A polymerase n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114306contigH-elongata_contig114306:787..1670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue9.2e-36
Seed eggNOG ortholog2880.D7G6M4
KEGG koko:K13291
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031325,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050265,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065007,GO:0070569,GO:0070920,GO:0071050,GO:0071076,GO:0071704,GO:0080090,GO:0090065,GO:0090304,GO:0097159,GO:0140098,GO:1900368,GO:1900370,GO:1901360,GO:1901363,GO:1903705
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.4984756-CDS-H-elongata_contig114306:786..9061622929660.4984756-CDS-H-elongata_contig114306:786..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114306 787..906 -
1691679109.6230576-CDS-H-elongata_contig114306:786..9061691679109.6230576-CDS-H-elongata_contig114306:786..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114306 787..906 -
1622929660.5214295-CDS-H-elongata_contig114306:1493..16701622929660.5214295-CDS-H-elongata_contig114306:1493..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114306 1494..1670 -
1691679109.6337888-CDS-H-elongata_contig114306:1493..16701691679109.6337888-CDS-H-elongata_contig114306:1493..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114306 1494..1670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114306.1145.1prot_H-elongata_contig114306.1145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114306 787..1670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114306.1145.1

>prot_H-elongata_contig114306.1145.1 ID=prot_H-elongata_contig114306.1145.1|Name=mRNA_H-elongata_contig114306.1145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
QAYSAADLRVKVLAYVVKHWAKRRLVNNASEGTLSSYGYLLCLVHFLQTR
NPPVVPNLQALPPDWNGLTPPGFSNHGMPVVMTLQPIDGLECNTYFYDP
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mRNA from alignment at H-elongata_contig114306:787..1670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114306.1145.1 ID=mRNA_H-elongata_contig114306.1145.1|Name=mRNA_H-elongata_contig114306.1145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig114306:787..1670- (Himanthalia elongata Himel1 dioecious)
CAGGCGTACTCGGCCGCCGACCTCCGAGTCAAGGTATTGGCCTACGTGGT
AAAGCACTGGGCTAAGCGACGGCTGGTGAACAACGCTAGTGAAGGCACCC
TCTCGTCGTACGGCTACCTCTTGTGCCTTGTGCATTTTCTGCAGACGAGG
AACCCTCCGGTAGTTCCCAACCTGCAGGTGAAGGTCATTTCTGCTGCTGC
TGCTGCTATTGTTGATCCTCCCATTGAAGTGATTGATTCTCTTCTTTACG
TTTGTATGTGTGGCATTGGTAGGTTTTTGGTTGGCATTTTGTGCTGGCTG
TGTTAACCGTGTGACTTTTGTGCCTCGCGGGTTGTAATTTCGAAGATCCC
CCCCCCCCTCGGCTTTAAGACGGCGCTCTAAGACTCGACAACCCTTGTTG
AATATTAGGACCGTAGGTCGGTCGATGTCAATCATTGTCGTGTGGCATGA
GGTGTCAAGCATGTGGCTATCAGCGCGGCTATTTCGATGAATGATCGTGT
CGTGTCGTAATGTGCCGATCAGCCGCAGCAGTTTTTTTTTCGTTATAGCA
TTGAAGTGAGAGAGGCGCCCCGGTAAGGCACACCGACGTTCCGCAAACAT
TGCGGGAGGGGGAGGAGTGCGTCGACCCTCGGCGGTACCCCCGCTGCCTT
TGGGGCGGTGATCTCCGCTCGCTCGCTGGAAGCTAGCCCCCGGCCTTGAC
ATTATTTCCCTCGTGTCCGCCCCGCGTGCCGCTCATGCTGTTATCGTTGC
GCTCTTTCCGTAAGGCCTTACCACCAGATTGGAATGGGTTGACGCCACCC
GGGTTTTCCAACCATGGGATGCCTGTGGTAATGACCCTGCAGCCGATCGA
CGGCTTGGAGTGCAACACCTACTTCTACGACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig114306:787..1670-

>mRNA_H-elongata_contig114306.1145.1 ID=mRNA_H-elongata_contig114306.1145.1|Name=mRNA_H-elongata_contig114306.1145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig114306:787..1670- (Himanthalia elongata Himel1 dioecious)
CAGGCGTACTCGGCCGCCGACCTCCGAGTCAAGGTATTGGCCTACGTGGT
AAAGCACTGGGCTAAGCGACGGCTGGTGAACAACGCTAGTGAAGGCACCC
TCTCGTCGTACGGCTACCTCTTGTGCCTTGTGCATTTTCTGCAGACGAGG
AACCCTCCGGTAGTTCCCAACCTGCAGCAGGCGTACTCGGCCGCCGACCT
CCGAGTCAAGGTATTGGCCTACGTGGTAAAGCACTGGGCTAAGCGACGGC
TGGTGAACAACGCTAGTGAAGGCACCCTCTCGTCGTACGGCTACCTCTTG
TGCCTTGTGCATTTTCTGCAGACGAGGAACCCTCCGGTAGTTCCCAACCT
GCAGGCCTTACCACCAGATTGGAATGGGTTGACGCCACCCGGGTTTTCCA
ACCATGGGATGCCTGTGGTAATGACCCTGCAGCCGATCGACGGCTTGGAG
TGCAACACCTACTTCTACGACCCGGCCTTACCACCAGATTGGAATGGGTT
GACGCCACCCGGGTTTTCCAACCATGGGATGCCTGTGGTAATGACCCTGC
AGCCGATCGACGGCTTGGAGTGCAACACCTACTTCTACGACCCG
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