prot_H-elongata_contig114298.1142.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig114298.1142.1
Unique Nameprot_H-elongata_contig114298.1142.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: D8LDJ3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.740e-30
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 62
            LL +VHVVPARMFRKVL VCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ
Sbjct:  533 LLDEVHVVPARMFRKVLSVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 592          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A3R7YDJ9_9STRA (DNA helicase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YDJ9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.540e-29
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0
Query:    2 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 62
            ILL +VHVVPA+MFRKV+G    HCKLGLTATLVREDDLI DLNFLIGPKLYEANWMDLTQ
Sbjct:   52 ILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQ 112          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S3K313_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K313_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.760e-28
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 62
            +L +VHVVPA  FRKVLGVCNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLTQ
Sbjct:  460 ILDEVHVVPAATFRKVLGVCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLTQ 519          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A835Z0I6_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.370e-28
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            LL +VHVVPA MFRKVL +CNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:  354 LLDEVHVVPATMFRKVLNICNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 412          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2ESU9_TRICV (DNA helicase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESU9_TRICV)

HSP 1 Score: 107 bits (266), Expect = 1.260e-27
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    2 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            +L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:   81 LLMDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 140          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S4A639_9STRA (DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A639_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.540e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            LL +VHVVPA+MFRKVL  CNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLT
Sbjct:  396 LLDEVHVVPAQMFRKVLSSCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLT 454          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: F0Y8L7_AURAN (DNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8L7_AURAN)

HSP 1 Score: 112 bits (279), Expect = 2.660e-27
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 62
            LL +VHVVPA+ FR+VL VCNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLT+
Sbjct:  367 LLDEVHVVPAQTFRRVLAVCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLTK 426          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2HP84_9STRA (DNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HP84_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.990e-27
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:   82 LMDEVHVVPAKMFRRVVGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 140          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2RSM8_9STRA (DNA helicase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSM8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.320e-27
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    3 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            LL +VHVVPA  FRKV+GVC AHCKLGLTATLVREDDLISDLNFLIGPKLYEANW DLT
Sbjct:  432 LLDEVHVVPANTFRKVIGVCKAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWQDLT 490          
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S1VF74_9STRA (DNA helicase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VF74_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.040e-26
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    2 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 61
            +L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:  111 LLMDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ3_ECTSI5.740e-3095.00DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A3R7YDJ9_9STRA4.540e-2985.25DNA helicase n=1 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A7S3K313_9STRA1.760e-2890.00DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A835Z0I6_9STRA2.370e-2891.53DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2ESU9_TRICV1.260e-2781.67DNA helicase (Fragment) n=1 Tax=Trieres chinensis ... [more]
A0A7S4A639_9STRA1.540e-2789.83DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
F0Y8L7_AURAN2.660e-2786.67DNA helicase (Fragment) n=1 Tax=Aureococcus anopha... [more]
A0A7S2HP84_9STRA2.990e-2783.05DNA helicase (Fragment) n=1 Tax=Helicotheca tamesi... [more]
A0A7S2RSM8_9STRA7.320e-2788.14DNA helicase n=2 Tax=Rhizochromulina marina TaxID=... [more]
A0A7S1VF74_9STRA1.040e-2681.67DNA helicase (Fragment) n=1 Tax=Grammatophora ocea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 6..63
e-value: 1.1E-5
score: 27.0
NoneNo IPR availablePANTHERPTHR11274RAD25/XP-B DNA REPAIR HELICASEcoord: 6..62
NoneNo IPR availablePANTHERPTHR11274:SF0GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPBcoord: 6..62
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114298contigH-elongata_contig114298:1516..1707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114298.1142.1mRNA_H-elongata_contig114298.1142.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig114298 1516..1707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig114298.1142.1 ID=prot_H-elongata_contig114298.1142.1|Name=mRNA_H-elongata_contig114298.1142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
SILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGP
KLYEANWMDLTQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase