mRNA_H-elongata_contig114298.1142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114298.1142.1
Unique NamemRNA_H-elongata_contig114298.1142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: D8LDJ3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.740e-30
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 186
            LL +VHVVPARMFRKVL VCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ
Sbjct:  533 LLDEVHVVPARMFRKVLSVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 592
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A3R7YDJ9_9STRA (DNA helicase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YDJ9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.540e-29
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    4 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 186
            ILL +VHVVPA+MFRKV+G    HCKLGLTATLVREDDLI DLNFLIGPKLYEANWMDLTQ
Sbjct:   52 ILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQ 112
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S3K313_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K313_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.760e-28
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 186
            +L +VHVVPA  FRKVLGVCNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLTQ
Sbjct:  460 ILDEVHVVPAATFRKVLGVCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLTQ 519
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A835Z0I6_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.370e-28
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            LL +VHVVPA MFRKVL +CNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:  354 LLDEVHVVPATMFRKVLNICNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 412
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2ESU9_TRICV (DNA helicase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESU9_TRICV)

HSP 1 Score: 107 bits (266), Expect = 1.260e-27
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    4 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            +L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:   81 LLMDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 140
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S4A639_9STRA (DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A639_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.540e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            LL +VHVVPA+MFRKVL  CNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLT
Sbjct:  396 LLDEVHVVPAQMFRKVLSSCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLT 454
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: F0Y8L7_AURAN (DNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8L7_AURAN)

HSP 1 Score: 112 bits (279), Expect = 2.660e-27
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQ 186
            LL +VHVVPA+ FR+VL VCNAHCKLGLTATLVREDDLI+DLNFLIGPKLYEANWMDLT+
Sbjct:  367 LLDEVHVVPAQTFRRVLAVCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLTK 426
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BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2HP84_9STRA (DNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HP84_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.990e-27
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:   82 LMDEVHVVPAKMFRRVVGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 140
[Close]
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S2RSM8_9STRA (DNA helicase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSM8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.320e-27
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    7 LLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            LL +VHVVPA  FRKV+GVC AHCKLGLTATLVREDDLISDLNFLIGPKLYEANW DLT
Sbjct:  432 LLDEVHVVPANTFRKVIGVCKAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWQDLT 490
[Close]
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Match: A0A7S1VF74_9STRA (DNA helicase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VF74_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.040e-26
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    4 ILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 183
            +L+ +VHVVPA+MFR+V+G   AHC+LGLTATLVREDDLISDLNFLIGPKLYEANWMDLT
Sbjct:  111 LLMDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLT 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114298.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ3_ECTSI5.740e-3095.00DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A3R7YDJ9_9STRA4.540e-2985.25DNA helicase n=1 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A7S3K313_9STRA1.760e-2890.00DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A835Z0I6_9STRA2.370e-2891.53DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2ESU9_TRICV1.260e-2781.67DNA helicase (Fragment) n=1 Tax=Trieres chinensis ... [more]
A0A7S4A639_9STRA1.540e-2789.83DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
F0Y8L7_AURAN2.660e-2786.67DNA helicase (Fragment) n=1 Tax=Aureococcus anopha... [more]
A0A7S2HP84_9STRA2.990e-2783.05DNA helicase (Fragment) n=1 Tax=Helicotheca tamesi... [more]
A0A7S2RSM8_9STRA7.320e-2788.14DNA helicase n=2 Tax=Rhizochromulina marina TaxID=... [more]
A0A7S1VF74_9STRA1.040e-2681.67DNA helicase (Fragment) n=1 Tax=Grammatophora ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114298contigH-elongata_contig114298:1516..1707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.1e-25
Seed eggNOG ortholog2880.D8LDJ3
Preferred nameERCC3
KEGG koko:K10843,ko:K11270
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006468,GO:0006611,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007275,GO:0007346,GO:0007399,GO:0008022,GO:0008026,GO:0008094,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008544,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009790,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0012501,GO:0015031,GO:0015616,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016973,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0022607,GO:0030154,GO:0030182,GO:0030554,GO:0030855,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031503,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032991,GO:0032993,GO:0033036,GO:0033554,GO:0033683,GO:0034367,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0036293,GO:0040008,GO:0042127,GO:0042623,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0047485,GO:0048513,GO:0048518,GO:0048522,GO:0048568,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051098,GO:0051101,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060429,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070482,GO:0070727,GO:0070816,GO:0070911,GO:0071103,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097550,GO:0097659,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901990,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903025,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000112,GO:2000677,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1061@1,KOG1123@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.0698547-CDS-H-elongata_contig114298:1515..17071622929660.0698547-CDS-H-elongata_contig114298:1515..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114298 1516..1707 -
1691679109.4387689-CDS-H-elongata_contig114298:1515..17071691679109.4387689-CDS-H-elongata_contig114298:1515..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114298 1516..1707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114298.1142.1prot_H-elongata_contig114298.1142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114298 1516..1707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114298.1142.1

>prot_H-elongata_contig114298.1142.1 ID=prot_H-elongata_contig114298.1142.1|Name=mRNA_H-elongata_contig114298.1142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
SILLWKVHVVPARMFRKVLGVCNAHCKLGLTATLVREDDLISDLNFLIGP
KLYEANWMDLTQV*
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mRNA from alignment at H-elongata_contig114298:1516..1707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114298.1142.1 ID=mRNA_H-elongata_contig114298.1142.1|Name=mRNA_H-elongata_contig114298.1142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig114298:1516..1707- (Himanthalia elongata Himel1 dioecious)
TCGATTCTTCTGTGGAAGGTGCACGTGGTCCCCGCTCGCATGTTCAGGAA
GGTGTTGGGCGTGTGCAACGCGCACTGCAAGCTAGGGCTGACGGCGACGC
TTGTTCGAGAAGACGACCTGATCTCGGACCTGAATTTTCTCATCGGCCCA
AAGCTGTATGAAGCCAACTGGATGGATCTAACCCAGGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig114298:1516..1707-

>mRNA_H-elongata_contig114298.1142.1 ID=mRNA_H-elongata_contig114298.1142.1|Name=mRNA_H-elongata_contig114298.1142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig114298:1516..1707- (Himanthalia elongata Himel1 dioecious)
TCGATTCTTCTGTGGAAGGTGCACGTGGTCCCCGCTCGCATGTTCAGGAA
GGTGTTGGGCGTGTGCAACGCGCACTGCAAGCTAGGGCTGACGGCGACGC
TTGTTCGAGAAGACGACCTGATCTCGGACCTGAATTTTCTCATCGGCCCA
AAGCTGTATGAAGCCAACTGGATGGATCTAACCCAGGTTTGATCGATTCT
TCTGTGGAAGGTGCACGTGGTCCCCGCTCGCATGTTCAGGAAGGTGTTGG
GCGTGTGCAACGCGCACTGCAAGCTAGGGCTGACGGCGACGCTTGTTCGA
GAAGACGACCTGATCTCGGACCTGAATTTTCTCATCGGCCCAAAGCTGTA
TGAAGCCAACTGGATGGATCTAACCCAGGTTTGA
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