mRNA_H-elongata_contig114293.1141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114293.1141.1
Unique NamemRNA_H-elongata_contig114293.1141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI001939B116 (E3 SUMO-protein ligase KIAA1586-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939B116)

HSP 1 Score: 67.8 bits (164), Expect = 8.690e-10
Identity = 51/199 (25.63%), Postives = 92/199 (46.23%), Query Frame = 1
Query:    1 VDESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVIT--KRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFNIIQVANNMGGKSLPTLKGIFMTRFLSRGTAVGSSCANYHAIILSMNE 591
            VDESTD+S+S   +++++Y   F             E       + + + C  + ++T  +       +   K++ F SD AA M G R+GVA  L ++  + +  H VAHR+ LG      E  L ++++ ++  +  +FS S++ +  F  I  A      +   L  +   R+LSR  A+ +   NY ++I    E
Sbjct:  202 VDESTDISESECLILYVKYRVSF-------------EYKTRFGGIIQLKSCDASSIVTAIEEFYKKYRLELDKMVMFTSDGAAVMLGRRNGVAAKLKERIPHLVQQHCVAHREDLGIADTWKEVKLLQDIETLMRTIYSMFSRSTINRCKFQDIAAACENEAIAFKPLNEV---RWLSRHFALQAIIKNYDSLIAYFEE 384          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI001CF31B43 (zinc finger protein 862-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF31B43)

HSP 1 Score: 65.1 bits (157), Expect = 7.340e-9
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  196 GVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFNIIQVANNMGGKSLPTLKGIFMTRFLSRGTAVGSSCANYHAIILSMNEEA 597
            GV   KI+GF SD AA M GSR+GVAT L +   + L VH +AHR +L       +  L +     +T++N  F HSS+R      +Q A     + + ++K +   R+L+  +A+ S    + +I+ ++  EA
Sbjct:  250 GVPLSKIVGFGSDGAAVMLGSRNGVATKLREDSPFMLNVHCIAHRFALCTGDGASKVTLVRGFVDTLTSLNYFFEHSSLRCSKLQSVQEALE---EPVLSVKEVHSVRWLAFFSALDSVFRCWVSIVTTLGNEA 380          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI001CF2640A (zinc finger protein 862-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2640A)

HSP 1 Score: 63.9 bits (154), Expect = 1.530e-8
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  196 GVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFNIIQVANNMGGKSLPTLKGIFMTRFLSRGTAVGSSCANYHAIILSMNEEA 597
            GV   KI+GF SD AA + GSR+GVAT L +   + L VH +AHR +L       +  L +     +T++N  F HSS+R      +Q A     + + ++K +   R+L+  +A+ S    + +I+ ++  EA
Sbjct:   12 GVPLSKIVGFGSDGAAVLLGSRNGVATKLREDSPFMLNVHCIAHRFALCTGDGASKVTLVRGFVDTLTSLNYFFEHSSLRCSKLQSVQEALE---EPVLSVKEVHSVRWLAFFSALDSVFRCWVSIVTTLGNEA 142          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI000C764E12 (zinc finger BED domain-containing protein 5-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C764E12)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-8
Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQA--ACLEEALTKEVDAV 393
            DESTD+S+    L+F+R+ +D   +++   L +  E+   S  ++      +++   K T     ++ +K++GF +D A AM GSRSG+AT++ QK    +  H + HRQ+L ++    CL+E +   ++ V
Sbjct:  175 DESTDISNCCQLLVFVRFLDD---NIIKEELLISRELETTSKGIDVLN--TVSEYFQKHT-----ISWEKLVGFCTDGAPAMLGSRSGLATLVKQKNPKAITTHCIIHRQALASKTLPGCLKETMQLAINVV 296          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: A0A8J6HQ77_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HQ77_TENMO)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-7
Identity = 47/137 (34.31%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRI 414
            DESTDVS     L+F+R+ ND       F   L+     E+ +    +G  + D I++  L   G+  QK+ GF +D A AM GSRSG+A ++ +K    +  H V HRQ+L A+   L E     +   +  VN I
Sbjct:  175 DESTDVSQCCQLLVFIRFLNDNNT----FKEELLFSQKLETTS----QGTDVMDAISQY-LEKHGLMWQKLAGFCTDGAPAMLGSRSGLAALIKKKNPSAITTHCVIHRQALAAKT--LPECFAITMKTAIKVVNFI 300          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI001F135BFE (SCAN domain-containing protein 3-like n=2 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135BFE)

HSP 1 Score: 56.2 bits (134), Expect = 7.560e-6
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRI 414
            DESTDVS     L+F+R+  D +    MF   L+     ++ +    +G  + + I++  +   G+  +++ GF +D A AM GSRSG+A ++  K    +  H V HRQ+L A+   L E  T  +   +  VN I
Sbjct:  175 DESTDVSQCCQLLVFIRFLEDNK----MFKEELLFSQELKTTS----QGADVMNAISQY-MEEHGLMWERLAGFCTDGAPAMLGSRSGLAALVKTKNPSAITTHCVIHRQALAAKT--LPECFTIALKTAIKVVNFI 300          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: A0A437BLF7_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A437BLF7_CHISP)

HSP 1 Score: 56.2 bits (134), Expect = 7.980e-6
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRI 414
            DESTDVS     L+F+R+  D +    MF   L+     ++ +    +G  + + I++  +   G+  +++ GF +D A AM GSRSG+A ++  K    +  H V HRQ+L A+   L E  T  +   +  VN I
Sbjct:  101 DESTDVSQCCQLLVFIRFLEDNK----MFKEELLFSQELKTTS----QGADVMNAISQY-MEEHGLMWERLAGFCTDGAPAMLGSRSGLAALVKTKNPSAITTHCVIHRQALAAKT--LPECFTIALKTAIKVVNFI 226          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: UPI00077A6EA3 (uncharacterized protein KIAA1586-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6EA3)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-5
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFNIIQV---ANNMGGKSLPT----LKGIFMTRFLSRGTAVGSSCANYHAIILSMNE 591
            DE TD+S     + F+++ N     V    L  + +V K+S +        I   +TK+ L   G+  QK+   ASDRAA MTG RSGVA  L +  S  +  H + H+ +L       +    K ++  V  + ++F +S  R   F  +Q+   + N+  KS       LK +   R+LS   A  +   +Y A++ ++ +
Sbjct:  149 DEFTDISVMEILMTFIQFFNSKTEKVEKHFL-FVEDVLKDSTSANAETNFNI---LTKK-LEDCGLQIQKLSSVASDRAAVMTGERSGVAARLKKVNSKVIAFHCLCHKLALACTDTTSDIDYIKNIELWVRQLWKMFENSPKRMAIFIKVQIEIKSVNLLDKSKKIVRKKLKKVCQARWLSFHAATSAIFDDYLAVLHTLRQ 346          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: A0A4Y2BJ68_ARAVE (General transcription factor II-I repeat domain-containing protein 2A n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BJ68_ARAVE)

HSP 1 Score: 53.9 bits (128), Expect = 3.030e-5
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:    1 VDESTDVSDSNNRLMFLRYENDFQPHVVMFALA-LMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLV-HLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFNIIQVANNMGGKSLPTLKGIFMTRFLSRGTAVGSSCANYHAIILSMNEE 594
            +DES D+ D+   ++F+RY     P   +  L  L  + H E           IA+ + K  L   G+   KI+  A+D A +MTG   GV +IL +K +  +L  H + H ++L AQ    E  + + ++ V+  +N I + +   +   + ++  ++     L   K     R+LSRG  +  S      I   +NE+
Sbjct:   23 IDESCDIKDTTQVILFVRYITSQGPKEELLGLLPLSGQTHGED----------IANAVQK-CLEDNGIDINKIVSIATDGARSMTGIHRGVTSILQKKINLEILTFHCIIHEEALCAQTFPAE--IVEVMNLVIKIINSILAKALYHRQFKDFLEEIDSQFSDLLLHNK----VRWLSRGNVLQRSALCLSEIKTFLNEK 205          
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Match: A0A6G0Y1Y6_APHCR (Protein ZBED8-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y1Y6_APHCR)

HSP 1 Score: 54.3 bits (129), Expect = 3.390e-5
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    4 DESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARGCQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSYRLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFS 420
            DESTDVS     L+F+R+ +D   + +   L L+ E+     T +R+   +I +   ++      +  +K+ GF  D A A+ GSRSG+AT++ +K    L  H V HRQ+L ++   L E L   +   V  VN I S
Sbjct:  150 DESTDVSQCCQLLVFVRFLDD--DNTIKEELLLLQEL---GTTSKRSDVMKIINEYFEK----HDIMWEKLAGFCMDGAPAILGSRSGLATLVKEKNCSALTTHCVIHRQALASKK--LPEELMYTLKQSVKMVNAIKS 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114293.1141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001939B1168.690e-1025.63E3 SUMO-protein ligase KIAA1586-like n=1 Tax=Styel... [more]
UPI001CF31B437.340e-932.84zinc finger protein 862-like n=1 Tax=Acropora mill... [more]
UPI001CF2640A1.530e-832.09zinc finger protein 862-like n=1 Tax=Acropora mill... [more]
UPI000C764E121.850e-830.30zinc finger BED domain-containing protein 5-like n... [more]
A0A8J6HQ77_TENMO2.060e-734.31Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
UPI001F135BFE7.560e-631.39SCAN domain-containing protein 3-like n=2 Tax=Vane... [more]
A0A437BLF7_CHISP7.980e-631.39Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
UPI00077A6EA32.230e-527.59uncharacterized protein KIAA1586-like n=1 Tax=Acro... [more]
A0A4Y2BJ68_ARAVE3.030e-526.00General transcription factor II-I repeat domain-co... [more]
A0A6G0Y1Y6_APHCR3.390e-533.09Protein ZBED8-like (Fragment) n=1 Tax=Aphis cracci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114293contigH-elongata_contig114293:275..871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.0175703-CDS-H-elongata_contig114293:274..8711622929660.0175703-CDS-H-elongata_contig114293:274..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114293 275..871 -
1691679109.4279838-CDS-H-elongata_contig114293:274..8711691679109.4279838-CDS-H-elongata_contig114293:274..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114293 275..871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114293.1141.1prot_H-elongata_contig114293.1141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114293 275..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114293.1141.1

>prot_H-elongata_contig114293.1141.1 ID=prot_H-elongata_contig114293.1141.1|Name=mRNA_H-elongata_contig114293.1141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
VDESTDVSDSNNRLMFLRYENDFQPHVVMFALALMHEVHKESNTVERARG
CQIADVITKRTLAAKGVTAQKIIGFASDRAAAMTGSRSGVATILAQKQSY
RLLVHLVAHRQSLGAQAACLEEALTKEVDAVVTAVNRIFSHSSVRKGNFN
IIQVANNMGGKSLPTLKGIFMTRFLSRGTAVGSSCANYHAIILSMNEEA
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mRNA from alignment at H-elongata_contig114293:275..871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114293.1141.1 ID=mRNA_H-elongata_contig114293.1141.1|Name=mRNA_H-elongata_contig114293.1141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig114293:275..871- (Himanthalia elongata Himel1 dioecious)
GTGGACGAAAGCACGGATGTATCCGACTCGAACAACCGCTTGATGTTCCT GCGCTACGAGAACGACTTCCAGCCGCACGTCGTGATGTTCGCCCTCGCTT TGATGCACGAGGTCCACAAGGAGTCTAACACGGTGGAGAGAGCTAGAGGT TGCCAAATCGCCGACGTAATCACCAAGAGGACTCTGGCCGCAAAGGGGGT GACTGCCCAGAAGATTATCGGTTTCGCGAGTGACAGGGCAGCAGCTATGA CGGGGTCGCGGAGTGGAGTGGCGACGATACTGGCTCAGAAGCAATCTTAT CGCCTACTCGTCCACCTCGTTGCGCACCGGCAGAGCCTTGGAGCGCAAGC TGCTTGTCTCGAAGAAGCGCTAACGAAGGAAGTGGATGCGGTGGTGACGG CGGTGAACCGAATTTTCAGCCACAGCTCCGTCCGGAAAGGTAACTTCAAC ATCATCCAGGTCGCCAACAATATGGGTGGAAAAAGCCTACCCACCCTTAA AGGGATCTTCATGACTCGCTTCCTGAGCAGGGGCACCGCCGTCGGGTCGT CGTGCGCGAACTACCACGCCATCATATTATCTATGAATGAGGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig114293:275..871-

>mRNA_H-elongata_contig114293.1141.1 ID=mRNA_H-elongata_contig114293.1141.1|Name=mRNA_H-elongata_contig114293.1141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig114293:275..871- (Himanthalia elongata Himel1 dioecious)
GTGGACGAAAGCACGGATGTATCCGACTCGAACAACCGCTTGATGTTCCT
GCGCTACGAGAACGACTTCCAGCCGCACGTCGTGATGTTCGCCCTCGCTT
TGATGCACGAGGTCCACAAGGAGTCTAACACGGTGGAGAGAGCTAGAGGT
TGCCAAATCGCCGACGTAATCACCAAGAGGACTCTGGCCGCAAAGGGGGT
GACTGCCCAGAAGATTATCGGTTTCGCGAGTGACAGGGCAGCAGCTATGA
CGGGGTCGCGGAGTGGAGTGGCGACGATACTGGCTCAGAAGCAATCTTAT
CGCCTACTCGTCCACCTCGTTGCGCACCGGCAGAGCCTTGGAGCGCAAGC
TGCTTGTCTCGAAGAAGCGCTAACGAAGGAAGTGGATGCGGTGGTGACGG
CGGTGAACCGAATTTTCAGCCACAGCTCCGTCCGGAAAGGTAACTTCAAC
ATCATCCAGGTCGCCAACAATATGGGTGGAAAAAGCCTACCCACCCTTAA
AGGGATCTTCATGACTCGCTTCCTGAGCAGGGGCACCGCCGTCGGGTCGT
CGTGCGCGAACTACCACGCCATCATATTATCTATGAATGAGGAGGCGGTG
GACGAAAGCACGGATGTATCCGACTCGAACAACCGCTTGATGTTCCTGCG
CTACGAGAACGACTTCCAGCCGCACGTCGTGATGTTCGCCCTCGCTTTGA
TGCACGAGGTCCACAAGGAGTCTAACACGGTGGAGAGAGCTAGAGGTTGC
CAAATCGCCGACGTAATCACCAAGAGGACTCTGGCCGCAAAGGGGGTGAC
TGCCCAGAAGATTATCGGTTTCGCGAGTGACAGGGCAGCAGCTATGACGG
GGTCGCGGAGTGGAGTGGCGACGATACTGGCTCAGAAGCAATCTTATCGC
CTACTCGTCCACCTCGTTGCGCACCGGCAGAGCCTTGGAGCGCAAGCTGC
TTGTCTCGAAGAAGCGCTAACGAAGGAAGTGGATGCGGTGGTGACGGCGG
TGAACCGAATTTTCAGCCACAGCTCCGTCCGGAAAGGTAACTTCAACATC
ATCCAGGTCGCCAACAATATGGGTGGAAAAAGCCTACCCACCCTTAAAGG
GATCTTCATGACTCGCTTCCTGAGCAGGGGCACCGCCGTCGGGTCGTCGT
GCGCGAACTACCACGCCATCATATTATCTATGAATGAGGAGGCG
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