mRNA_H-elongata_contig114242.1138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114242.1138.1
Unique NamemRNA_H-elongata_contig114242.1138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: D7G853_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G853_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.120e-32
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVDLRE 207
            MV+YAGVEGGGT+WRVA+ADGHPTNI +SKSFVT  D+KEQLK IKDWLS RKYD LGIGTFGPVD RE
Sbjct:    1 MVIYAGVEGGGTTWRVAIADGHPTNITESKSFVTVQDSKEQLKAIKDWLSTRKYDCLGIGTFGPVDPRE 69          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A836CJY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.910e-19
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVD 198
            M +Y GVEGGGT+WRVA+A+GHP+NI + + F T  +A EQL  I+ WL   K+D LGI TFGP+D
Sbjct:    1 MTIYCGVEGGGTTWRVAIAEGHPSNITELEVFPTLDNASEQLAVIRKWLDNHKFDTLGIATFGPID 66          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A6T5PDP2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PDP2_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 1.050e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNI--VDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVDLR 204
            MV +A +EGGGTSWRVAL D  PTN+  V+S  F+T  + +E + EIK+WL  + YDALGI TFGP+D +
Sbjct:    1 MVKFAAIEGGGTSWRVALVDDDPTNLDAVESAQFITTENPQEVMGEIKNWLRNKTYDALGIATFGPIDAK 70          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A7S1XTE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTE6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.160e-16
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSER-KYDALGIGTFGPVD 198
            MV YAG+EGGGT+WRVA+A+G P NI+  ++F T+   +E L++I DWL     +DA+G+ TFGPVD
Sbjct:    1 MVRYAGIEGGGTTWRVAIAEGDPRNIIARETFDTR-GPEETLQDIVDWLKANGPFDAMGVATFGPVD 66          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A6U4HTD1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HTD1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.270e-15
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSER-KYDALGIGTFGPVD 198
            MV YAG+EGGGT+WRVA+A+G P NI+  ++F T+   +E L++I DWL     +DA+G+ TFGPVD
Sbjct:    1 MVRYAGIEGGGTTWRVAIAEGDPRNIIARETFDTR-GPEETLQDIVDWLKANGPFDAMGVATFGPVD 66          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: F2UDM1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UDM1_SALR5)

HSP 1 Score: 74.7 bits (182), Expect = 8.380e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 VYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVD 198
            V+AGVEGGG +WRVA+A G PTNI +   F TK   +  L  I+ WL E +YDALGI TFGP++
Sbjct:   38 VFAGVEGGGQTWRVAIAVGSPTNITERAVFETKK-PETTLPAIRAWLDEHEYDALGIATFGPIE 100          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A9V8S7_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V8S7_MONBE)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-14
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    7 VYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPV 195
            VYA VEGGGTSWR A+A G P NIV+  +F T+   +  L  I+ WL  RKYD+LGIGTFGP+
Sbjct:   28 VYAAVEGGGTSWRAAIAVGRPDNIVERTTFKTEK-PEVTLVAIRKWLDARKYDSLGIGTFGPI 89          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A7S1XU50_9STRA (Hypothetical protein n=10 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU50_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.970e-14
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSER-KYDALGIGTFGPVD 198
            MV YAG+EGGGT+WRVA+A+G P NI+  ++F T+   +E L++I DWL     +DA+G+ TFGPVD
Sbjct:    1 MVRYAGIEGGGTTWRVAIAEGDPRNIIARETFDTR-GPEETLQDIVDWLKANGPFDAMGVATFGPVD 66          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: A0A4D9D252_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D252_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.520e-14
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVD 198
            M  Y G+EGGGT+W+VA+A G P NIV+S  F T     E   +IK+W+ ++ YD++GI TFGP+D
Sbjct:    1 MPTYLGIEGGGTTWKVAIAQGKPDNIVESIRFDTTT-PDETFGKIKEWIKDKTYDSIGIATFGPLD 65          
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Match: W7TQA6_9STRA (Fructokinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQA6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.330e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLSERKYDALGIGTFGPVD 198
            M  Y G+EGGGT+W+VA+A   P NIV+S  F T     E   +IK+W+ ++ YD++GI TFGP+D
Sbjct:    1 MPTYLGIEGGGTTWKVAIAQEKPDNIVESIRFDTTT-PDETFGKIKEWIKDKTYDSIGIATFGPLD 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114242.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G853_ECTSI2.120e-3282.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJY8_9STRA3.910e-1957.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T5PDP2_HETAK1.050e-1755.71Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1XTE6_9STRA7.160e-1653.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4HTD1_9STRA4.270e-1553.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F2UDM1_SALR58.380e-1556.25Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A9V8S7_MONBE1.020e-1458.73Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S1XU50_9STRA1.970e-1453.73Hypothetical protein n=10 Tax=Phaeomonas parva Tax... [more]
A0A4D9D252_9STRA4.520e-1450.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TQA6_9STRA7.330e-1448.48Fructokinase n=1 Tax=Nannochloropsis gaditana TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114242contigH-elongata_contig114242:1355..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D7G853
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
EggNOG free text desc.ROK family
EggNOG OGs2QRD3@2759,COG1940@1
EC2.7.1.4
COG Functional cat.GK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.8347926-CDS-H-elongata_contig114242:1354..15821622929659.8347926-CDS-H-elongata_contig114242:1354..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114242 1355..1582 +
1691679109.3467538-CDS-H-elongata_contig114242:1354..15821691679109.3467538-CDS-H-elongata_contig114242:1354..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114242 1355..1582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114242.1138.1prot_H-elongata_contig114242.1138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114242 1355..1582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114242.1138.1

>prot_H-elongata_contig114242.1138.1 ID=prot_H-elongata_contig114242.1138.1|Name=mRNA_H-elongata_contig114242.1138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MVVYAGVEGGGTSWRVALADGHPTNIVDSKSFVTKYDAKEQLKEIKDWLS
ERKYDALGIGTFGPVDLREVNAHHS*
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mRNA from alignment at H-elongata_contig114242:1355..1582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114242.1138.1 ID=mRNA_H-elongata_contig114242.1138.1|Name=mRNA_H-elongata_contig114242.1138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig114242:1355..1582+ (Himanthalia elongata Himel1 dioecious)
ATGGTAGTCTACGCCGGTGTGGAGGGTGGAGGAACTTCGTGGAGAGTTGC CCTGGCGGATGGACACCCTACCAACATCGTAGACTCAAAATCCTTCGTCA CGAAATACGACGCTAAAGAACAGCTAAAGGAGATCAAAGACTGGCTTTCG GAACGAAAGTATGATGCCCTGGGAATCGGCACCTTCGGCCCCGTCGACCT TCGAGAGGTGAACGCTCACCACTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig114242:1355..1582+

>mRNA_H-elongata_contig114242.1138.1 ID=mRNA_H-elongata_contig114242.1138.1|Name=mRNA_H-elongata_contig114242.1138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig114242:1355..1582+ (Himanthalia elongata Himel1 dioecious)
ATGGTAGTCTACGCCGGTGTGGAGGGTGGAGGAACTTCGTGGAGAGTTGC
CCTGGCGGATGGACACCCTACCAACATCGTAGACTCAAAATCCTTCGTCA
CGAAATACGACGCTAAAGAACAGCTAAAGGAGATCAAAGACTGGCTTTCG
GAACGAAAGTATGATGCCCTGGGAATCGGCACCTTCGGCCCCGTCGACCT
TCGAGAGGTGAACGCTCACCACTCCTGAATGGTAGTCTACGCCGGTGTGG
AGGGTGGAGGAACTTCGTGGAGAGTTGCCCTGGCGGATGGACACCCTACC
AACATCGTAGACTCAAAATCCTTCGTCACGAAATACGACGCTAAAGAACA
GCTAAAGGAGATCAAAGACTGGCTTTCGGAACGAAAGTATGATGCCCTGG
GAATCGGCACCTTCGGCCCCGTCGACCTTCGAGAGGTGAACGCTCACCAC
TCCTGA
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