mRNA_H-elongata_contig11423.1137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11423.1137.1
Unique NamemRNA_H-elongata_contig11423.1137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.260e-93
Identity = 146/217 (67.28%), Postives = 172/217 (79.26%), Query Frame = 1 
Query:    7 LTFAASHD-RFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQP-LQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNV---SVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMILR 642
            L +   H+ RFDLLGV+VTPANSWWK G  ATRKI R L + + +SS+SS   +  + VAESTL G N FPDAWR+D   +NLLPQLN FE+ EEA RL++   G+SG+ LLA+TLL SE+PVT++ TGPLTNLAWVLDNFP+AS +I KVL+MGGAID PGNV    VEGFDGSAEWN FWDP AAKRVWDSDLE+VLTPLDATN +PITKE +LR
Sbjct:   36 LVYLLKHENRFDLLGVSVTPANSWWKVGAAATRKILRTLSKKHASSSSSSGAAEGRIPVAESTLDGVNTFPDAWRHDACKLNLLPQLNGFETEEEALRLEKGEDGISGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRVWDSDLELVLTPLDATNEVPITKETLLR 252
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.580e-87
Identity = 140/215 (65.12%), Postives = 162/215 (75.35%), Query Frame = 1 
Query:   28 DRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSAS-------SSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNV---SVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMILR 642
            DRFDLLGV+VTPANSWWK G  ATRKI   L + + +            +    + VAESTL G N FPDAWR D   +NLLPQLN FE+ EEA RL++   G+SG+ LLA+TLL SE+PVT++ TGPLTNLAWVLDNFP+AS +I KVL+MGGAID PGNV    VEGFDGSAEWN FWDP AAKRVWDSDLE+VLTPLDATN +PITKE +LR
Sbjct:   33 DRFDLLGVSVTPANSWWKVGAAATRKILWTLSKKHTSXXXXXXXXXXXGATEGRIPVAESTLNGVNAFPDAWRCDACKLNLLPQLNGFETEEEALRLEKGEDGISGQLLLAQTLLASESPVTVVATGPLTNLAWVLDNFPEASRKIDKVLIMGGAIDVPGNVFADDVEGFDGSAEWNIFWDPPAAKRVWDSDLELVLTPLDATNEVPITKETLLR 247
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: A0A7V3BVN5_9ACTN (Nucleoside hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V3BVN5_9ACTN)

HSP 1 Score: 176 bits (446), Expect = 6.030e-51
Identity = 97/209 (46.41%), Postives = 127/209 (60.77%), Query Frame = 1 
Query:    7 LTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGP--GVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITK 627
            L    S++  DLLG+++TPA++  +     TRKI     RS+ A            VA  +L G NPFP AWR DC+ +N LP LN         R +   P   + G  LLA+ LL +  PVTL+VTGPLTNLAWVLD+ P+   RI  VL MGGA++ PGNV   G DGSAEWN +WDP AAKRV+DS + + + PLDAT+ +P+T+
Sbjct:   19 LLLLLSYEGVDLLGISITPADTVLEGAVPVTRKILDLAGRSDVA------------VAPGSLEGPNPFPYAWRLDCLKVNDLPVLNQ--------RAEILAPVSDLPGHGLLARCLLETSEPVTLLVTGPLTNLAWVLDHHPEVEPRIEAVLWMGGALEVPGNVQQPGHDGSAEWNVYWDPPAAKRVFDSGVPITMFPLDATDRVPVTE 207
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: A0A495QX50_9ACTN (Purine nucleosidase n=1 Tax=Actinomadura pelletieri DSM 43383 TaxID=1120940 RepID=A0A495QX50_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 4.200e-45
Identity = 88/210 (41.90%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:    7 LTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMI 636
            L    S+D  +L+GV VTPA+   +     T K+ R   R++            L+ A   + GRNPFP AWR DC+ ++ LP LN+  +     R     P +     L + +L +  PVT++ TGPLTNLA  LD  P+    I +V++MGGAID  GNV   G+DGSAEWN FWDP AA RVW S L + L PLDAT+ +P+T E++
Sbjct:   18 LCLLLSYDHVNLIGVAVTPADCLLEPALSVTAKMSRLAGRND------------LRPAPGIIEGRNPFPMAWRVDCLRVDQLPILNTRPAPARGGR-----PSLPAHKDLVRKVLAASEPVTVVCTGPLTNLARGLDEHPEIEGGIREVVIMGGAIDVDGNVDRPGYDGSAEWNLFWDPEAAGRVWRSGLPLTLYPLDATDHVPVTSELV 210
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: A0A5D0P352_9ACTN (Nucleoside hydrolase n=5 Tax=Microbispora TaxID=2005 RepID=A0A5D0P352_9ACTN)

HSP 1 Score: 160 bits (405), Expect = 1.120e-44
Identity = 89/209 (42.58%), Postives = 117/209 (55.98%), Query Frame = 1 
Query:    7 LTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEM 633
            L     +D  DL G+ VTPA+        ATRKI                  + +  A   LPGRNPFP AWR D +  + LP LN  + +        +GP    +  LA  L+ +  PVT++ TGPLTNLAW L++ P+  SRI +V+ MGGAID  GNV   G DG+AEWN FWDP AAKRV+DS + + + PLD TN +P+T E+
Sbjct:   24 LLLLTQYDNVDLRGIAVTPADCLPGPALSATRKILDLT-------------GEDVPTAVGVLPGRNPFPLAWRIDALRADALPVLNQKDHMTAG----AEGPPAHEQ--LAAWLMRAPDPVTVLATGPLTNLAWCLEHHPEVESRIEEVVFMGGAIDVDGNVRQPGHDGTAEWNLFWDPDAAKRVFDSAVPITMFPLDVTNRVPVTAEL 213
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: UPI001684244B (nucleoside hydrolase n=10 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001684244B)

HSP 1 Score: 159 bits (403), Expect = 1.560e-44
Identity = 88/206 (42.72%), Postives = 126/206 (61.17%), Query Frame = 1 
Query:   28 DRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVE---GFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMI 636
            D  +LLG+ VTPA+ + +    ATRKI   + RS+            + VAEST+ G NPFP  +R D   ++ LP LN      E   +Q      SG+  +A++L  + +PVTL+VTGPLT +A  LD  P+   +I K++ MGGA++ PGNVS +   G DGSAEWN +WDPI+A RVW + + +VL PLD TN++P+T E++
Sbjct:   27 DDVELLGIVVTPADCYVQPAVSATRKILDLMGRSD------------VPVAESTVRGINPFPRLFRRDSFVVDHLPILN------EREMIQTPLVPESGQEFMARSLQTAPSPVTLMVTGPLTTVATALDMAPEIEGKIEKIVWMGGALNVPGNVSRDIEPGQDGSAEWNVYWDPISANRVWQTSIPIVLCPLDLTNNVPVTSEVV 214
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: UPI001CD96E33 (nucleoside hydrolase n=1 Tax=Nonomuraea sp. NEAU-L178 TaxID=2878562 RepID=UPI001CD96E33)

HSP 1 Score: 158 bits (400), Expect = 5.780e-44
Identity = 88/210 (41.90%), Postives = 112/210 (53.33%), Query Frame = 1 
Query:    7 LTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMI 636
            L     +D  DL GV VTPA+   +    AT KI   + R              +  A   LPGRNPFP AWR D +  + LP LN  +    A  L            LA  L+ +  PVT++ TGPLTNLAW LD+ P   SRI +V+ MGGA+D  GNV     DGSAEWN FWDP A KRV+DS + + + PLD TN +P+T + +
Sbjct:   24 LLLLTQYDNIDLRGVAVTPADCLPRPALSATHKILDLVGRD-------------VPTAVGVLPGRNPFPLAWRIDALRADALPVLNQRDQRTRADALP-------AHEQLATWLMRAPAPVTVLATGPLTNLAWCLDHHPHVESRIEEVVFMGGALDVAGNVRQPDHDGSAEWNVFWDPDALKRVFDSSVPITMFPLDVTNRVPVTLDFV 213
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: K9XHR0_9CHRO (Inosine/uridine-preferring nucleoside hydrolase n=6 Tax=Cyanobacteria TaxID=1117 RepID=K9XHR0_9CHRO)

HSP 1 Score: 156 bits (395), Expect = 2.390e-43
Identity = 89/210 (42.38%), Postives = 126/210 (60.00%), Query Frame = 1 
Query:   28 DRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVS--GEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNV--SVE-GFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMILR 642
            DR   LGV VTPA+ + +    ATRKI   +             R  + VAEST+ G NPFP  +R D   ++ LP LN  E          + P VS  G+  + + LL +  PVTL+VTGPLT +A  LD  P+  ++IAK++ MGGA++  GNV  S+E G DGSAEWN +WDPI+A RVW + +E+++ PLD TN++P+T E++ +
Sbjct:   27 DRIQPLGVVVTPADCYAQPAVSATRKILDLM------------GRDDIPVAESTVRGINPFPRLYRRDSFIVDHLPILNQSEV---------RSPLVSETGQEFMVRVLLDAPEPVTLMVTGPLTTVAVALDTAPEIEAKIAKIVWMGGALNVAGNVEKSLEAGQDGSAEWNVYWDPISAARVWQTQIEIIMCPLDLTNTVPVTSEIVYQ 215
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: UPI0016533869 (nucleoside hydrolase n=1 Tax=Actinomadura decatromicini TaxID=2604572 RepID=UPI0016533869)

HSP 1 Score: 157 bits (396), Expect = 3.210e-43
Identity = 86/214 (40.19%), Postives = 120/214 (56.07%), Query Frame = 1 
Query:    7 LTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFES----LEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMI 636
            L    S++   L+GV VTPA+   +     T K+ R               R  L+ A   + GRNPFP AWR DC+ ++ LP LN+  +      +A R     P +     LA+ +L +  PVT++ TGPL+NLA  LD  P+  + I +V++MGGA+D  GNV   G DGSAEWN +WDP AA RVW S L V L PLDAT+ +P+T +++
Sbjct:   18 LRLLLSYEHVTLVGVAVTPADCLLEPALSVTAKMLRLA------------GRDDLRPAPGIIEGRNPFPLAWRVDCLRVDRLPILNAAPAPGRGARDARRPGGGRPSLPAHKDLARKVLAAPEPVTVVCTGPLSNLARGLDEHPEIEAGIREVVIMGGAVDVAGNVDRPGHDGSAEWNLYWDPDAADRVWRSTLPVTLYPLDATDLVPVTSDLV 219
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BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Match: A0A3C0N6R7_9CYAN (Nucleoside hydrolase n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N6R7_9CYAN)

HSP 1 Score: 155 bits (393), Expect = 4.870e-43
Identity = 87/203 (42.86%), Postives = 126/203 (62.07%), Query Frame = 1 
Query:   43 LGVTVTPANSWWKAGTEATRKIFRALYRSNEASSASSSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQEKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAKVLVMGGAIDAPGNV--SVE-GFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLDATNSLPITKEMILR 642
            LGV VTPA+ + +    ATRKI   +                + VAEST+ G NPFP  +R D   ++ LP LN  E+++    LQE     +G+  + ++LL ++ PVTL+VTGPLT +A  LD  PK  S+I +++ MGGA++ PGNV  S+E G DGSAEWN +WDP+ A RVW +++ +VL PLD TN++P+T E + +
Sbjct:   32 LGVIVTPADCYIQPAVSATRKILDLM------------GHWDIPVAESTVRGINPFPSLYRRDSFIVDHLPILNQQETIQTP-LLQE-----TGQEFMVRSLLAADQPVTLLVTGPLTTVAAALDLAPKIESKIKQIIWMGGALNVPGNVEKSLEPGQDGSAEWNAYWDPLGADRVWQTEISLVLCPLDLTNTVPVTSEFVYQ 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11423.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM07_ECTSI2.260e-9367.28Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A6H5JPH9_9PHAE1.580e-8765.12IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
A0A7V3BVN5_9ACTN6.030e-5146.41Nucleoside hydrolase n=1 Tax=Actinomycetia bacteri... [more]
A0A495QX50_9ACTN4.200e-4541.90Purine nucleosidase n=1 Tax=Actinomadura pelletier... [more]
A0A5D0P352_9ACTN1.120e-4442.58Nucleoside hydrolase n=5 Tax=Microbispora TaxID=20... [more]
UPI001684244B1.560e-4442.72nucleoside hydrolase n=10 Tax=unclassified Coleofa... [more]
UPI001CD96E335.780e-4441.90nucleoside hydrolase n=1 Tax=Nonomuraea sp. NEAU-L... [more]
K9XHR0_9CHRO2.390e-4342.38Inosine/uridine-preferring nucleoside hydrolase n=... [more]
UPI00165338693.210e-4340.19nucleoside hydrolase n=1 Tax=Actinomadura decatrom... [more]
A0A3C0N6R7_9CYAN4.870e-4342.86Nucleoside hydrolase n=1 Tax=Cyanobacteria bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11423contigH-elongata_contig11423:3162..8602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue2.3e-76
Seed eggNOG ortholog2880.D8LM07
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
EggNOG free text desc.purine nucleosidase activity
EggNOG OGsCOG1957@1,KOG2938@2759
Ec32 ortholog descriptionInosine/uridine-preferring nucleoside hydrolase domain
Ec32 orthologEc-14_002390.1
EC3.2.2.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size645
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11423.1137.1prot_H-elongata_contig11423.1137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11423 3162..8602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.7158206-CDS-H-elongata_contig11423:3161..33781622929659.7158206-CDS-H-elongata_contig11423:3161..3378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 3162..3378 +
1691679109.286778-CDS-H-elongata_contig11423:3161..33781691679109.286778-CDS-H-elongata_contig11423:3161..3378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 3162..3378 +
1622929659.732072-CDS-H-elongata_contig11423:6876..69811622929659.732072-CDS-H-elongata_contig11423:6876..6981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 6877..6981 +
1691679109.2968082-CDS-H-elongata_contig11423:6876..69811691679109.2968082-CDS-H-elongata_contig11423:6876..6981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 6877..6981 +
1622929659.7571235-CDS-H-elongata_contig11423:7329..74701622929659.7571235-CDS-H-elongata_contig11423:7329..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 7330..7470 +
1691679109.3066106-CDS-H-elongata_contig11423:7329..74701691679109.3066106-CDS-H-elongata_contig11423:7329..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 7330..7470 +
1622929659.7776737-CDS-H-elongata_contig11423:7791..78861622929659.7776737-CDS-H-elongata_contig11423:7791..7886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 7792..7886 +
1691679109.320073-CDS-H-elongata_contig11423:7791..78861691679109.320073-CDS-H-elongata_contig11423:7791..7886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 7792..7886 +
1622929659.791963-CDS-H-elongata_contig11423:8515..86021622929659.791963-CDS-H-elongata_contig11423:8515..8602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 8516..8602 +
1691679109.3294225-CDS-H-elongata_contig11423:8515..86021691679109.3294225-CDS-H-elongata_contig11423:8515..8602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11423 8516..8602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11423.1137.1

>prot_H-elongata_contig11423.1137.1 ID=prot_H-elongata_contig11423.1137.1|Name=mRNA_H-elongata_contig11423.1137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MYLTFAASHDRFDLLGVTVTPANSWWKAGTEATRKIFRALYRSNEASSAS
SSDRQPLQVAESTLPGRNPFPDAWRYDCIAINLLPQLNSFESLEEAHRLQ
EKGPGVSGEALLAKTLLGSETPVTLIVTGPLTNLAWVLDNFPKASSRIAK
VLVMGGAIDAPGNVSVEGFDGSAEWNFFWDPIAAKRVWDSDLEVVLTPLD
ATNSLPITKEMILR*
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mRNA from alignment at H-elongata_contig11423:3162..8602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11423.1137.1 ID=mRNA_H-elongata_contig11423.1137.1|Name=mRNA_H-elongata_contig11423.1137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5441bp|location=Sequence derived from alignment at H-elongata_contig11423:3162..8602+ (Himanthalia elongata Himel1 dioecious)
ATGTATCTTACCTTCGCGGCGTCGCATGACAGGTTTGATCTCTTGGGAGT
GACGGTTACTCCGGCCAACTCTTGGTGGAAAGCGGGCACCGAGGCCACCC
GGAAGATTTTTCGGGCCCTCTACCGCTCCAACGAAGCCTCGAGCGCGTCG
AGCAGCGATCGACAGCCCTTGCAGGTGGCGGAGTCGACGCTCCCCGGGAG
GAACCCCTTCCCAGACGGTGCGTGATGCGCAACAGTACGGTTACAGCAAG
GTTAAACTATGGTCACGGCGCGGCTACACGACGGTTACGGGACACTTACA
GCAGGGTTACAGTACGGCCACGACACGATTACACCATCGTTACAGGAGAG
CTACATTACAGTTACATGACGGTTACAGCACGCCAAAACTACGGTTACAC
TGGGGTTACATTGCGCTTACAGCACGGTTAAACTATGACCACGGCACGGT
TACATCGCGGTTAGTGAGAAAGGCACTGAATAAAGAATATTTGGGCATAG
GTACGGGTTGGCCCTCTCTCAGCAAGGTGGATGGTACAAAATACTACTAC
TACTACTACTACTATTACTAGTAGTAGTCGTAGTTCTATGTTATCGGTAC
GAGAAATAAAATGGGATTGAAGCATACAAACGCTCGTGAGGTTTGAAAGG
AGGGAAGATTCCAAATTGCGGATAGACCAATAGATTACTGGGATATTCTG
ACCAATAGGATACATGATAGTTTCAGTAGTCGATCTACTATACGTATTTG
GGAGATCATTGCTTGTCCGGATGACCCTCCCCCCTCCCCCATTAGTTCAG
TTCGGTAGGTGGACTCCCTGTGGTGTTCTCGTGTTTGTCCAGATTCCAAG
ATGTGTAGATGTGGGCTGTAGCAACACTATATTGATATATCGATCTTTAT
ACTCGTCTGGCATGTCTTCATGTAAAATCCTGCTTAATTAACGCCCAGCG
CAGCACCGCCTCTCTCGTGTGAGACCCATTCCTTCTAACAGAATCCTTCT
ACTAAGGTCTCCAGGATCTTGTCGAATGCTCTTTCCTTACGTGATTTGAC
TCCCAACGAGATACTGAGGTCGGAAGCTACCGCCCCAAGACCCACCCACC
TCCTCGAGGGTGGCCCCCTCTCATGTTAACCTAGGCAGTCCGCGACCCTC
TGTTTCATCGGCCGTTTTAAGGAAGCAACCACAATTTCCGGAGATTCATA
ATTGGATGAATACAACACAAAACAACCCCAACTCCACCGCTCGTCGATTA
TGCGTCAGCCGGGTCGGCATGGAGCATCGCCGGGGGGTTTTCCGGAGTAG
AAATGCGAAAAGCGCAAATCTCAGCTATTAATATAATGAAATCTGGAAGC
ACTACTAACACAGGCGTCAAAACTGAAAGCTTATCGGAGGAGGGTGGGGA
GGGGCGATGGAGGGGCGGCGCACATCGCCAATTCAGGCGAAATCATAACA
GCAGCAGGGAGGTATGCTTCAGCCAAGTCTGATGCTGGAGACCCTACGCA
GTCTCCTGATTTGGCACAAGATTATTCCAAAGCTAAGCCTCTCTCAAGCG
GCAGCCGGCACCTAGGCGGTAGCGCCGACCTCACGGGACTCGACATAGAC
TGCAAACCGGTTAATCCATGATGTCTCCACCGCCGCAAAACGTCATCGAC
TTGGACGCCGAGCACTCGAAGCGACTGTAAGCGGACGTGCTTCCGATTAT
ATGGGGGGGGTGAAAAAGCGACCCAGCGGTTTCGCCGACGCATCCGCAAG
ATTGCGTGAATACGCAATATATTAGCAGGTACGATTTCCCTCGCCACCGT
CCGTTCCGCGTGTCCTCCCGGCGCGCTTGGCGGTAGGGGTTGCCAGCGCA
GATGATCTCGCTGCGTGTCTCAACAGCGATCCAAAGCTAGACACATGGGG
GTGCGCACGTTGGATTTTTTTTTTCGCGGATGACTTGTCGCTATCAGCCT
ATAAGCCGCACGGACGGGTAGAAGCTCTACTGCTCAAAAGCGAGCGCGGG
AAGGAGTTACACAGCTCTCGGGAAAACGGCCGCCCGCGACGTCGACCACG
CCGCTACCAACCCTCGACTCGCAGTTTCGAGACCTCTGTGAGACCGATAA
AGACTCTCTGCTTATCCCGCTCCGGCTTCCTTGCTGCTGGTCATCTATTA
ATAGCGCGGTTCGAACAGCGGCCGCGGCGCACGGCTATTCCGGGAGCCTT
GGCATCCTGCCCTTTTGATGCGATAGGGCTTATAGGAGCCCAGATTGTAC
GCTGGGCATCTAGCCGTATTTCAGCGCGTAATGCCCGCGATGGTGAAGAC
CGTGCCCACGGCTCTAGCTTTGGAGGGAAGAGCCACCAGCCACGTCGGCG
GCCGGGTTCTCTTGGCTATACCTCGCGAGTGTCCCCGCCAGGCGGGGTGG
AGATGGATGAAGGCCTAAATTTCGCTCTTTTCCCCTGTCTCGCTGTCTTG
GGCCAATCAATGCCTGCGACGGTTGGATTGTCAACATTTTTTTCTCCTTG
AGAGCGAGACAGCGCCATCTCTGTCGCATCGCACCTAGAGGTGTCGCCTC
CTTCCTTCCTTCTTTATTGCACTTGCGGCACCGAAGAAAAAAAAATACCG
AGGCGCTACTTTTTTTTTGTGCAAACCGCTCTCGGTCACTTGGTCGTGAG
CGTCAGAATCGTGTGGCTAATTCCGATGCCACCAGCTGGTTGCGGCTGCG
CGTTCCAGACAGCTGCTGCCGGGCGGAGCGCCGCCTCTCCTTGCTGACTG
TCCGCTTGTCGCCTTCTCCGGCCCCCTCGTTGTCTTTGTCTCGCGTTTGT
CTCGCTTTTTGAGTCGCAATTGAAGATGATCTTGGGCCGCCTCGAGCCAA
CTGGCTGTTTTGTCGGGGGGGAGTTCCGTTGGCTGATGCGGGAAGAAAGT
GGGGGAAAGGGGAGAATTGCTTTCCTACCACGTGGGAGAGAGACCTGATG
CCTTACCGTCGATTCTTTGCATAAATATGTTATTGCCCTCTCTCCGGGTT
TCCGACCTCGGTGCCTCGCTGTTTGTCTCTTAAGGAACAACCGGAGCTGC
CTCCGCCGTCGACGTGCACTCGCAACCGGTTGTCGTACCGCACCGCACCG
CTAAAGAGTATCCTTTACCGTACCGTCCGAGAGTACCATTTACCGTACCG
TTCGAGGATAGGAACATAACTGCGCCGAACGCACGGTAGGCTTGAAGCCT
GGTCTTCGGTCACCCGCTTCGTCGCGCTTCACTTCACCCAACAATGCTAA
CGGCGCGGCCTTTCCCGTTATCTCCTTGATTGAAGTACATAATAGACAAT
AGAGCGGATAACCGTTTGTGTCGGATAACCTTTCGAGTACGAAGCCCATG
GATTGCGCTGTCGTCAAGTGAACGGAGCTTCAGGCGGGGCCCGCGGTTCT
CTCTGGTGTTGTAGGCGCATTGTGTAGTTACAGTAGAGTACATCACAATG
CTTACCACCTGTAGGGCTGATAAGAGTATAGTGTTGTAACTGTCAGACGT
CTAGAATAACATGCCTTCCGTACGCAAGAGGGCGCACTCAGCCCCAAAAG
AACACACGGAATAATATTGTAGCAATCAAGCAAGCGCAAGTACTTTCATT
TGACACTGAGCCTCCGCCCTGCCGCCGCCGCTCTGTCTCGCGGCATCCTT
AACCCCCTCCTCATTCTCCCCCCCCGTCCTCCTCTCTGGGATCTCTGAAC
CGTTCTAAACATAAGCGTGGCGATACGACTGCATCGCCATCAATCTCCTG
CCGCAGCTCAACAGCTTCGAGAGTCTGGAAGAAGCGCATAGGCTTCAGGA
AAAAGGACCGGGAGTATCGGGTGCGATATGGTATACTAAAACATGACGCA
ACAAACAAGAGCGACGCTCAGTAAACGCCTTCTTCGCATGGAACGCCTTC
GTATGGACGTCATCCCTTGCCCCTCCCCCGTCCCCCAACGCCACCCACCG
CTTACTGACACTTTCATAGTGAAGTTTATTTATTTATTCTCCCCATCTGC
AGAAAATTGATACACACCAAAACAAGACAATAAAAAAAATACATGAAACC
CCCATGGTGAGCGTATGTTATCTCGCTTTTTACATATCCTTCAAAGATTG
CGGGATTAGGATTCAAAGAGATGGCGACACGCGACACACCGGCGTTGCGG
AAACGTCGTGCTGTGCAGGCGAAGCGCTTCTGGCAAAAACGCTCCTTGGG
TCTGAAACCCCCGTGACTCTCATCGTGACGGGACCCCTTACCAATCTCGC
CTGGGTGCTGGATAATTTTCCCAAGGCATCTTCGAGGATCGCGAAGGTTC
TCGTCATGGGTGAGACCAAAGAACCAACAAGCTCCGTAGCATGCGTGACG
CGTGATGCGTGATCCTAGTAACACGGATAGGAGCACTAAAGCCGCCTTCG
CAGGGCCTCACGAGGTTGTGTGGGTGGCGAATTGCGAGGATAAACCGCGA
AATTTATGACCACGCTAATATCTTCTAGCTCACAAAAAAATGGGTTTCCC
ACGAGGCGCAGCGTAGCCTGGGATAGTATGACGATAACCCCTCCTCCCCA
CACACACACCCTTTCCTCCGCCCGCATGGACGCGGAAAACCCCTGTCCGC
GGCCTCTTTCCCCACGTAATTTCGCGGTAGGGGGAGCCATCGACGCGCCC
GGGAACGTTTCCGTGGAAGGCTTCGACGGAAGCGCGGAATGGAACTTCTT
CTGGGACCCGATTGCGGCGAAACGCGTGAGGGGCGAGCTCTACCGCTCTA
GATCACGACACCGCGGTAGTATACTATATGCTTTGCTGTGCTATTATTCT
ATGATATGATGTTTACCGTGGCTGTGCTGTGTTGTACTGTACTGTGCTAT
GCTTGAACATGCAGCGGTCGAATGCCGCAGCGGTCGGCGATTCAGTCTCG
TTTCTCTCGCTTTATTGTATTGGTGACGCAGCCACCCCCTTCTTGCGATA
GCTACGCAGCAAGGAGAAACCCGTGCTAAAACTTTCCCCCTATCGATCAC
GTGCGCGCCGAGACTATAAGCTGTGAAGAGCAGAGCAGACGAGCAGCCCG
TGGAGGGAGAGAGAAAAAAGGGGGCAGGGGGGTCACCTTTCTACCCGTTG
CGTTTTCTCATCTCCAATGATGGGAAGACCTTCCTCCGTTTTAAGGGATT
CTCGAAATTAGACGCTTGAGCCTTCCCTGCGGCACTGACTCCCGGCCTCG
CTCTCTCTAATACTGGAAGCTACTTATTTCAGATGCAACCGCAGGGAGCT
CGCGCACCGAGACCAGTGGTATGATGAAACACAGGACGGGTGATCCAAGC
CGGCGTGTCCATGTCCCGCATCTTCCATCCGTATCCCTTGGGCGGTTGCT
TCAGGTGTGGGACTCTGATCTCGAGGTGGTGCTGACGCCGCTCGATGCGA
CGAATAGCTTACCTATCACGAAGGAGATGATCTTACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11423:3162..8602+

>mRNA_H-elongata_contig11423.1137.1 ID=mRNA_H-elongata_contig11423.1137.1|Name=mRNA_H-elongata_contig11423.1137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig11423:3162..8602+ (Himanthalia elongata Himel1 dioecious)
ATGTATCTTACCTTCGCGGCGTCGCATGACAGGTTTGATCTCTTGGGAGT
GACGGTTACTCCGGCCAACTCTTGGTGGAAAGCGGGCACCGAGGCCACCC
GGAAGATTTTTCGGGCCCTCTACCGCTCCAACGAAGCCTCGAGCGCGTCG
AGCAGCGATCGACAGCCCTTGCAGGTGGCGGAGTCGACGCTCCCCGGGAG
GAACCCCTTCCCAGACGATGTATCTTACCTTCGCGGCGTCGCATGACAGG
TTTGATCTCTTGGGAGTGACGGTTACTCCGGCCAACTCTTGGTGGAAAGC
GGGCACCGAGGCCACCCGGAAGATTTTTCGGGCCCTCTACCGCTCCAACG
AAGCCTCGAGCGCGTCGAGCAGCGATCGACAGCCCTTGCAGGTGGCGGAG
TCGACGCTCCCCGGGAGGAACCCCTTCCCAGACGCGTGGCGATACGACTG
CATCGCCATCAATCTCCTGCCGCAGCTCAACAGCTTCGAGAGTCTGGAAG
AAGCGCATAGGCTTCAGGAAAAAGGACCGGGAGTATCGGCGTGGCGATAC
GACTGCATCGCCATCAATCTCCTGCCGCAGCTCAACAGCTTCGAGAGTCT
GGAAGAAGCGCATAGGCTTCAGGAAAAAGGACCGGGAGTATCGGGCGAAG
CGCTTCTGGCAAAAACGCTCCTTGGGTCTGAAACCCCCGTGACTCTCATC
GTGACGGGACCCCTTACCAATCTCGCCTGGGTGCTGGATAATTTTCCCAA
GGCATCTTCGAGGATCGCGAAGGTTCTCGTCATGGGCGAAGCGCTTCTGG
CAAAAACGCTCCTTGGGTCTGAAACCCCCGTGACTCTCATCGTGACGGGA
CCCCTTACCAATCTCGCCTGGGTGCTGGATAATTTTCCCAAGGCATCTTC
GAGGATCGCGAAGGTTCTCGTCATGGGGGGAGCCATCGACGCGCCCGGGA
ACGTTTCCGTGGAAGGCTTCGACGGAAGCGCGGAATGGAACTTCTTCTGG
GACCCGATTGCGGCGAAACGCGGGGAGCCATCGACGCGCCCGGGAACGTT
TCCGTGGAAGGCTTCGACGGAAGCGCGGAATGGAACTTCTTCTGGGACCC
GATTGCGGCGAAACGCGTGTGGGACTCTGATCTCGAGGTGGTGCTGACGC
CGCTCGATGCGACGAATAGCTTACCTATCACGAAGGAGATGATCTTACGG
TGAGTGTGGGACTCTGATCTCGAGGTGGTGCTGACGCCGCTCGATGCGAC
GAATAGCTTACCTATCACGAAGGAGATGATCTTACGGTGA
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