mRNA_H-elongata_contig114229.1136.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.150e-48 Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 1
Query: 7 AAHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQDQSKPALSVNSQVVTAAGAA 336
AA + +P TKIYVGNVEPHITTEMIKT+FEPFG V+GAEMV DPSNPGNHKGFGFIQYAQESVARTV++TM+SFELAGRTL+VAWAQDQSKPALSV ++AAGAA
Sbjct: 415 AAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAA 524
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A7S2SQ65_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ65_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.310e-14 Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 22 SASPPM---TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWA 273
+AS P+ +++VGN+ +T++ +KT+FEPFG ++ +++ DPS H+G+GFI YA + A+ + M FEL G+ ++V WA
Sbjct: 16 AASKPLMQKNRVFVGNIAQELTSDTLKTVFEPFGDIIDCQIMQDPSGGPRHRGYGFISYALQQNAQDAVSQMNGFELLGKQVRVNWA 102
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: UPI001CF2B153 (RNA-binding protein 39-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF2B153) HSP 1 Score: 77.8 bits (190), Expect = 1.470e-13 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 10 AHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
A R P T++YVG++ +IT +MIK IFEPFGTV +++ D S G KG+GF+Q+ + AR ++ M FELAGR +KV
Sbjct: 257 AERLKNPPGPTRLYVGSLHFNITEQMIKAIFEPFGTVESVQLIYD-SETGRSKGYGFLQFKEAEAARQAMDQMNGFELAGRPMKV 340
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: UPI0009E48D03 (RNA-binding protein 39-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E48D03) HSP 1 Score: 77.4 bits (189), Expect = 2.000e-13 Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 10 AHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
A + A P T++YVG++ +I +MIK IFEPFGTV +M+ D S G KG+GF+Q+ AR ++ M FELAGR +KV
Sbjct: 257 AEKLKAPPGPTRLYVGSLHFNINEQMIKAIFEPFGTVESVQMIYD-SETGRSKGYGFLQFKDADAARQAMDQMNGFELAGRPMKV 340
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: K3XBN5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBN5_GLOUD) HSP 1 Score: 71.6 bits (174), Expect = 1.950e-11 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 13 HRSSASP-------------PMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVS-DPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
HR SA+P P +YVGNV + +++IF PFG V MVS P PG H+G+GF+++ ++S A + ++ M FELAG+ LKV
Sbjct: 217 HRGSANPGDTSIGQQAIKDVPTNCVYVGNVRVELNAHHLESIFSPFGIVRSCVMVSVSPLEPGVHRGYGFLEFTEDSAALSAIQHMNGFELAGQNLKV 314
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A7R8W376_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W376_9CRUS) HSP 1 Score: 68.6 bits (166), Expect = 3.260e-11 Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 43 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQ---DQSKPALSVN 306
+IY+ +V +T + IK++FE FG + E++ +PS PG H+GFGF++Y Q A + +M +L G+ L+V A D + ALS++
Sbjct: 33 RIYIASVHQDLTEQDIKSVFEAFGKIKHCELIPNPSIPGKHRGFGFVEYEQTQAAEEAVASMNMLDLGGQFLRVGKASTPPDALQQALSIS 123
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A6A6LNS7_HEVBR (Uncharacterized protein n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LNS7_HEVBR) HSP 1 Score: 68.9 bits (167), Expect = 1.780e-10 Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 43 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNH-KGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQDQS 285
++YVGN+ +IT ++++ +FEPFGTV E+V PS+ H KGFGF+Q+A+ AR L E+AGR +KV+ DQ+
Sbjct: 281 RLYVGNLHFNITEDLLRQVFEPFGTV---ELVQLPSDETGHCKGFGFVQFARLEDARNALNLNGQVEIAGRPIKVSTVTDQT 359
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A6J8BFB3_MYTCO (PUF60 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BFB3_MYTCO) HSP 1 Score: 67.8 bits (164), Expect = 3.490e-10 Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 43 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
+IY+ ++ +T + IK++FE FG +L E+ DP+ PG HK +GFI+Y A+ + +M F+L G+ L+V
Sbjct: 20 RIYIASIHQDLTEDDIKSVFEAFGNILTCEICKDPTKPGKHKEYGFIEYDSSQAAQDAVASMNLFDLGGQYLRV 93
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A1I8FVK8_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FVK8_9PLAT) HSP 1 Score: 67.4 bits (163), Expect = 5.480e-10 Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 40 TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
+++YV NV P +T ++++FE FG+++ ++ DP+ PG H GFGFI+Y+ A + M F+L G+ LKV
Sbjct: 219 SRVYVANVHPQLTEFELRSVFEAFGSLVSCKLEPDPTVPGVHCGFGFIEYSTPESAIEAISAMHGFDLGGQLLKV 293
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A267EEY3_9PLAT (Uncharacterized protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EEY3_9PLAT) HSP 1 Score: 67.4 bits (163), Expect = 6.000e-10 Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 40 TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 264
+++YV NV P +T ++++FE FG+++ ++ DP+ PG H GFGFI+Y+ A + M F+L G+ LKV
Sbjct: 226 SRVYVANVHPQLTEFELRSVFEAFGSLVSCKLEPDPTVPGVHCGFGFIEYSTPESAIEAISAMHGFDLGGQLLKV 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114229.1136.1 >prot_H-elongata_contig114229.1136.1 ID=prot_H-elongata_contig114229.1136.1|Name=mRNA_H-elongata_contig114229.1136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp IPAAHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSback to top mRNA from alignment at H-elongata_contig114229:305..2008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114229.1136.1 ID=mRNA_H-elongata_contig114229.1136.1|Name=mRNA_H-elongata_contig114229.1136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1704bp|location=Sequence derived from alignment at H-elongata_contig114229:305..2008- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114229:305..2008- >mRNA_H-elongata_contig114229.1136.1 ID=mRNA_H-elongata_contig114229.1136.1|Name=mRNA_H-elongata_contig114229.1136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig114229:305..2008- (Himanthalia elongata Himel1 dioecious)back to top |