prot_H-elongata_contig114229.1136.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig114229.1136.1
Unique Nameprot_H-elongata_contig114229.1136.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length174
Homology
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.150e-48
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 0
Query:    3 AAHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQDQSKPALSVNSQVVTAAGAA 112
            AA   + +P  TKIYVGNVEPHITTEMIKT+FEPFG V+GAEMV DPSNPGNHKGFGFIQYAQESVARTV++TM+SFELAGRTL+VAWAQDQSKPALSV    ++AAGAA
Sbjct:  415 AAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAA 524          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A7S2SQ65_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ65_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.310e-14
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = 0
Query:    8 SASPPM---TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWA 91
            +AS P+    +++VGN+   +T++ +KT+FEPFG ++  +++ DPS    H+G+GFI YA +  A+  +  M  FEL G+ ++V WA
Sbjct:   16 AASKPLMQKNRVFVGNIAQELTSDTLKTVFEPFGDIIDCQIMQDPSGGPRHRGYGFISYALQQNAQDAVSQMNGFELLGKQVRVNWA 102          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: UPI001CF2B153 (RNA-binding protein 39-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF2B153)

HSP 1 Score: 77.8 bits (190), Expect = 1.470e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    4 AHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            A R    P  T++YVG++  +IT +MIK IFEPFGTV   +++ D S  G  KG+GF+Q+ +   AR  ++ M  FELAGR +KV
Sbjct:  257 AERLKNPPGPTRLYVGSLHFNITEQMIKAIFEPFGTVESVQLIYD-SETGRSKGYGFLQFKEAEAARQAMDQMNGFELAGRPMKV 340          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: UPI0009E48D03 (RNA-binding protein 39-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E48D03)

HSP 1 Score: 77.4 bits (189), Expect = 2.000e-13
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    4 AHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            A +  A P  T++YVG++  +I  +MIK IFEPFGTV   +M+ D S  G  KG+GF+Q+     AR  ++ M  FELAGR +KV
Sbjct:  257 AEKLKAPPGPTRLYVGSLHFNINEQMIKAIFEPFGTVESVQMIYD-SETGRSKGYGFLQFKDADAARQAMDQMNGFELAGRPMKV 340          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: K3XBN5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBN5_GLOUD)

HSP 1 Score: 71.6 bits (174), Expect = 1.950e-11
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0
Query:    5 HRSSASP-------------PMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVS-DPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            HR SA+P             P   +YVGNV   +    +++IF PFG V    MVS  P  PG H+G+GF+++ ++S A + ++ M  FELAG+ LKV
Sbjct:  217 HRGSANPGDTSIGQQAIKDVPTNCVYVGNVRVELNAHHLESIFSPFGIVRSCVMVSVSPLEPGVHRGYGFLEFTEDSAALSAIQHMNGFELAGQNLKV 314          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A7R8W376_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W376_9CRUS)

HSP 1 Score: 68.6 bits (166), Expect = 3.260e-11
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 0
Query:   15 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQ---DQSKPALSVN 102
            +IY+ +V   +T + IK++FE FG +   E++ +PS PG H+GFGF++Y Q   A   + +M   +L G+ L+V  A    D  + ALS++
Sbjct:   33 RIYIASVHQDLTEQDIKSVFEAFGKIKHCELIPNPSIPGKHRGFGFVEYEQTQAAEEAVASMNMLDLGGQFLRVGKASTPPDALQQALSIS 123          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A6A6LNS7_HEVBR (Uncharacterized protein n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LNS7_HEVBR)

HSP 1 Score: 68.9 bits (167), Expect = 1.780e-10
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 0
Query:   15 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNH-KGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQDQS 95
            ++YVGN+  +IT ++++ +FEPFGTV   E+V  PS+   H KGFGF+Q+A+   AR  L      E+AGR +KV+   DQ+
Sbjct:  281 RLYVGNLHFNITEDLLRQVFEPFGTV---ELVQLPSDETGHCKGFGFVQFARLEDARNALNLNGQVEIAGRPIKVSTVTDQT 359          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A6J8BFB3_MYTCO (PUF60 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BFB3_MYTCO)

HSP 1 Score: 67.8 bits (164), Expect = 3.490e-10
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   15 KIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            +IY+ ++   +T + IK++FE FG +L  E+  DP+ PG HK +GFI+Y     A+  + +M  F+L G+ L+V
Sbjct:   20 RIYIASIHQDLTEDDIKSVFEAFGNILTCEICKDPTKPGKHKEYGFIEYDSSQAAQDAVASMNLFDLGGQYLRV 93          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A1I8FVK8_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FVK8_9PLAT)

HSP 1 Score: 67.4 bits (163), Expect = 5.480e-10
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:   14 TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            +++YV NV P +T   ++++FE FG+++  ++  DP+ PG H GFGFI+Y+    A   +  M  F+L G+ LKV
Sbjct:  219 SRVYVANVHPQLTEFELRSVFEAFGSLVSCKLEPDPTVPGVHCGFGFIEYSTPESAIEAISAMHGFDLGGQLLKV 293          
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Match: A0A267EEY3_9PLAT (Uncharacterized protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EEY3_9PLAT)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-10
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:   14 TKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPSNPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKV 88
            +++YV NV P +T   ++++FE FG+++  ++  DP+ PG H GFGFI+Y+    A   +  M  F+L G+ LKV
Sbjct:  226 SRVYVANVHPQLTEFELRSVFEAFGSLVSCKLEPDPTVPGVHCGFGFIEYSTPESAIEAISAMHGFDLGGQLLKV 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114229.1136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX1_ECTSI1.150e-4880.00RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2SQ65_9STRA8.310e-1437.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001CF2B1531.470e-1345.88RNA-binding protein 39-like isoform X1 n=3 Tax=Acr... [more]
UPI0009E48D032.000e-1345.88RNA-binding protein 39-like isoform X1 n=2 Tax=Orb... [more]
K3XBN5_GLOUD1.950e-1138.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7R8W376_9CRUS3.260e-1136.26Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A6A6LNS7_HEVBR1.780e-1043.90Uncharacterized protein n=2 Tax=Hevea brasiliensis... [more]
A0A6J8BFB3_MYTCO3.490e-1037.84PUF60 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
A0A1I8FVK8_9PLAT5.480e-1038.67Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A267EEY3_9PLAT6.000e-1038.67Uncharacterized protein (Fragment) n=3 Tax=Macrost... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 15..89
e-value: 1.3E-17
score: 74.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 16..87
e-value: 7.7E-17
score: 60.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 14..93
score: 17.114
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..101
e-value: 4.5E-22
score: 80.4
NoneNo IPR availablePANTHERPTHR47330FAMILY NOT NAMEDcoord: 12..148
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114229contigH-elongata_contig114229:305..2008 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114229.1136.1mRNA_H-elongata_contig114229.1136.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig114229 305..2008 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig114229.1136.1 ID=prot_H-elongata_contig114229.1136.1|Name=mRNA_H-elongata_contig114229.1136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
IPAAHRSSASPPMTKIYVGNVEPHITTEMIKTIFEPFGTVLGAEMVSDPS
NPGNHKGFGFIQYAQESVARTVLETMASFELAGRTLKVAWAQDQSKPALS
VNSQVVTAAGAAVGAAAQAAALAARVASSAAAGGAAAAAATVRMSMAEQL
QAALGNGGLRAGAGIGGVGGGGAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf