mRNA_H-elongata_contig114105.1126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114105.1126.1
Unique NamemRNA_H-elongata_contig114105.1126.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114105.1126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114105contigH-elongata_contig114105:182..1966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.6783366-CDS-H-elongata_contig114105:182..3841622929658.6783366-CDS-H-elongata_contig114105:182..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114105 183..384 -
1691679108.913653-CDS-H-elongata_contig114105:182..3841691679108.913653-CDS-H-elongata_contig114105:182..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114105 183..384 -
1622929658.691632-CDS-H-elongata_contig114105:1919..19661622929658.691632-CDS-H-elongata_contig114105:1919..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114105 1920..1966 -
1691679108.9272976-CDS-H-elongata_contig114105:1919..19661691679108.9272976-CDS-H-elongata_contig114105:1919..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114105 1920..1966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114105.1126.1prot_H-elongata_contig114105.1126.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114105 183..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114105.1126.1

>prot_H-elongata_contig114105.1126.1 ID=prot_H-elongata_contig114105.1126.1|Name=mRNA_H-elongata_contig114105.1126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
EKSSSSSTPAPSVSVRSLETSTSSSCASSPGWPGHEAISKNDVPDGKVSA
AAFERDPGGDIKEKKDEDKRQRRSTASPSSLDS
back to top

mRNA from alignment at H-elongata_contig114105:182..1966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114105.1126.1 ID=mRNA_H-elongata_contig114105.1126.1|Name=mRNA_H-elongata_contig114105.1126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-elongata_contig114105:182..1966- (Himanthalia elongata Himel1 dioecious)
GAGAAAAGTTCTTCGTCGTCAACGCCCGCGCCCTCTGTCTCTGTCAGGTA
AAAGCCCTTGCTTTCTCCGCGGAGTTTTGTTTTTTGCTTTGTATTGTATT
AGTTAAGACGGTTAAGACACGGGACTAGCATCCTGAGCCCCCACCAAGTG
ATTTGGAAAATGACGGGATGAGAATCGTACACGTCGACATTGTTTGAAGT
TGAAACGGAACGGAAGCGGTACAATTGAGCACGGAGGGGAACATACGGAC
GGGAAATAAGTTTGCATTTTTTCAACGCGCTGCTCGTAAATGGAACAGGA
TTCCCGTCCTGTCCCGTCCTTTTATCCTACGGGTAATTGCCGTGGTAAAC
ATTTGACGTGGTAATTGATGTGATTGCCGTGGTAAGATAACCATTTTCCT
GAAACGTTTTATGAAACATTTGATGCGATCAATGACGGGAGTTTACGCGT
ACGACCACGTCCTCGGGCAAATCTCGGAAATTGCTCCTTTACTGTGTGTA
CATGATTTCGAAGCATGTTGTTTTCGCTGTAGTAAACATGCAAAAATGTA
GCCTGTTCGAAATTATGGAACTAGGGACGGCGCAACGTGGGGGGCGGGGG
TGGCGGCGTTGGCTGTGTGTCTTACCCGTGTGTGTGTTTCTTTTCGGTAT
ATTTTCCCCGATGGACTGCGGCTTGGGTCCACCTTCAACCTCATCGCTGA
TTTTTTTAACGGCACGTTGTCCGTTTGATTCAAAAAAAGAAGAGTTTTCA
CACCGGTTTGCCGATCATCCCTACCGTAATGGTTCGTGATGGAGTCGTTG
GGAGGGGACGGGTCTAAAAGAAACCCTAAAAGGATCGTGCGTTTTTGTTT
TGTTTTTTCTCCTGAGGTCGCATACAGACCTATTAGGATATTGTGTTACC
CGAATCTGAACGGCATCGGAAAAATATTCATACTATATATTGTAATATCT
TACGATTTTGTACGCTGCTTTGCTTTCCCTGACGACTCTTTGAAAGTCTA
TATACAAAAAAATATACATATACTAGAGCGGAAACAAAGAAGAGGCTGTT
AAAGCGGGGGGTTAGTTTACGGGATTCCGCCAAGATTTCCCGTTTCTGAC
GGTATTTCATGGGATGTTTACATTTCATGGAAATCGTTGTTCCCGTCCAC
GACTTTTTACGTTCATGAATGCCTAGATGTGTGTGCGCCGCCCAGCCGCG
GTGCTCCATTAACTCTTTCTTGTTCTCAAATGGACATACGACACACAGGG
GTGGCAATATCTTCGCGGCTACTTATGCGCAGTCTATCATTTGCCCGCAT
CCATCGCGTCAAAATACCACCGTACAGTCTCAATTTTACGTACTAGCTCT
ATATGGTCTCGTTTTTCGCCCCCCCCCCATCCCCGCTCCCCGCTCTCCCT
TCCCTCCATAATGTTTCTAGGCTAACGTCAAGCGATTCTGTCCGTTTTTT
GTTGGCGTGGATATATAATGTCCAAAAATATTTCCCGCTTTCTCCTCGAG
AGCGACAACCTTCACGCTTCCCTTTTCCTGTGACAACCGCCTCGTTTTTA
TTGAAACTCCTTTTGGGTGCTGTTTCTAGCAGGAGTCTCGAAACCTCCAC
GTCTTCGTCGTGCGCCAGCTCTCCTGGGTGGCCTGGACACGAAGCGATCT
CGAAAAATGATGTACCCGATGGCAAGGTTTCTGCGGCAGCCTTCGAGCGC
GATCCAGGTGGAGACATAAAGGAAAAAAAAGATGAGGACAAGCGGCAAAG
GCGTTCTACCGCCTCACCGTCCTCGTTGGACTCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig114105:182..1966-

>mRNA_H-elongata_contig114105.1126.1 ID=mRNA_H-elongata_contig114105.1126.1|Name=mRNA_H-elongata_contig114105.1126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig114105:182..1966- (Himanthalia elongata Himel1 dioecious)
GAGAAAAGTTCTTCGTCGTCAACGCCCGCGCCCTCTGTCTCTGTCAGGAG
AAAAGTTCTTCGTCGTCAACGCCCGCGCCCTCTGTCTCTGTCAGGAGTCT
CGAAACCTCCACGTCTTCGTCGTGCGCCAGCTCTCCTGGGTGGCCTGGAC
ACGAAGCGATCTCGAAAAATGATGTACCCGATGGCAAGGTTTCTGCGGCA
GCCTTCGAGCGCGATCCAGGTGGAGACATAAAGGAAAAAAAAGATGAGGA
CAAGCGGCAAAGGCGTTCTACCGCCTCACCGTCCTCGTTGGACTCCGAGT
CTCGAAACCTCCACGTCTTCGTCGTGCGCCAGCTCTCCTGGGTGGCCTGG
ACACGAAGCGATCTCGAAAAATGATGTACCCGATGGCAAGGTTTCTGCGG
CAGCCTTCGAGCGCGATCCAGGTGGAGACATAAAGGAAAAAAAAGATGAG
GACAAGCGGCAAAGGCGTTCTACCGCCTCACCGTCCTCGTTGGACTCC
back to top