mRNA_H-elongata_contig114042.1123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114042.1123.1
Unique NamemRNA_H-elongata_contig114042.1123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A6H5L745_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L745_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.470e-35
Identity = 93/222 (41.89%), Postives = 102/222 (45.95%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGG---------------------------------------------------------VMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGT-AGEGG----------EREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEKRFV 462
            GPTNKKLR+HLPLL PGGGLSRLRVGS+TRE   G+AL FDDSFEHEAWND                                                              V       D   REG S     QGE    A        HP  +GT  G GG            +     + APRVTLIADVWHPDLS+ EVRFLAFLQ+A+LRLEKR V
Sbjct:   91 GPTNKKLRVHLPLLGPGGGLSRLRVGSDTREVVEGKALVFDDSFEHEAWNDDXXXXXXXXXXXXXXXXXXXXXXIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENVVDRNSRGTDNNTREGPSCLEEAQGEDCNDA-------CHPGERGTQGGRGGCSVGEGRGKAAEKRCRRSRAAPRVTLIADVWHPDLSNSEVRFLAFLQEASLRLEKRLV 305          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A5D6Y1S5_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1S5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.330e-16
Identity = 53/152 (34.87%), Postives = 65/152 (42.76%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEKR 456
            GPTNKKLR HLPL+ P  G  RLRVG    +   G    FDDSFEHEAWND                             +A+ +                                 R+ L+ DVWHPDLS+ E +FLAFL+ A LR+ K+
Sbjct:  217 GPTNKKLRCHLPLVVPPHGACRLRVGDRMIDVREGECFVFDDSFEHEAWND-----------------------------DAAHS---------------------------------RIVLVVDVWHPDLSAPERKFLAFLRDAQLRMAKK 306          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: G4YIF4_PHYSP (Asp_Arg_Hydrox domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YIF4_PHYSP)

HSP 1 Score: 83.6 bits (205), Expect = 5.040e-16
Identity = 55/151 (36.42%), Postives = 63/151 (41.72%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPTNKKLR HLPL+ P GG  RLR G E      G+   FDDSFEHEAWND             D R R                                                  + LI DVWHPDLS+ E +FL FL+ A LR++K
Sbjct:  198 GPTNKKLRCHLPLVVP-GGTCRLRAGDEVVYAQEGKCFVFDDSFEHEAWNDD------------DSRSR--------------------------------------------------IVLIIDVWHPDLSAQERKFLGFLRNAQLRMDK 285          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: H3GMW2_PHYRM (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMW2_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 9.470e-16
Identity = 54/151 (35.76%), Postives = 64/151 (42.38%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPT+KKLR HLPL+ P GG+ RLR G E      G+   FDDSFEHEAWND             D R R                                                  + LI DVWHPDLS+ E +FL FL+ A LR++K
Sbjct:  196 GPTSKKLRCHLPLVVP-GGMCRLRAGDEVVYAQEGKCFVFDDSFEHEAWNDD------------DARSR--------------------------------------------------IVLIIDVWHPDLSAQERKFLGFLRNAQLRMDK 283          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A329T3F9_9STRA (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T3F9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.780e-16
Identity = 55/151 (36.42%), Postives = 63/151 (41.72%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPTNKKLR HLPL+ P GG  RLR G E      G+   FDDSFEHEAWND       TR                                                          R+ LI DVWHPDLS+ E +FL FL+ A LR++K
Sbjct:  199 GPTNKKLRCHLPLVVP-GGKCRLRAGDEVVYAQEGKCFIFDDSFEHEAWNDDD-----TRS---------------------------------------------------------RIVLIIDVWHPDLSAQERKFLGFLRNAQLRMDK 286          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A3R7GYD5_9STRA (Asp_Arg_Hydrox domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYD5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.270e-15
Identity = 54/151 (35.76%), Postives = 63/151 (41.72%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPTNKKLR HLPL+ P GG  RLR G +      G+   FDDSFEHEAWND             D R R                                                  + LI DVWHPDLS  E +FL+FL+ A LR++K
Sbjct:  193 GPTNKKLRCHLPLVVP-GGKCRLRAGDQIVHVQEGKCFVFDDSFEHEAWNDD------------DARSR--------------------------------------------------IVLIIDVWHPDLSEQERKFLSFLRNAQLRMDK 280          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: D0MZ58_PHYIT (Aspartyl/Asparaginyl beta-hydroxylase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZ58_PHYIT)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-15
Identity = 54/155 (34.84%), Postives = 64/155 (41.29%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEKRFVE 465
            GPTNKKLR HLPL+ P  G  RLR G E  +   G+   FDDSFEHEAWND                                                      G R          R+ LI DVWHPDLS+ E +FL FL+ A LR++K   +
Sbjct:  200 GPTNKKLRCHLPLVVP-EGKCRLRAGDEVVDVQEGKCFIFDDSFEHEAWNDN-----------------------------------------------------GSRS---------RIVLIIDVWHPDLSAQERKFLGFLRNAQLRMDKNMCQ 291          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A8J2S5P6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5P6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.270e-15
Identity = 56/155 (36.13%), Postives = 65/155 (41.94%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEKRFVE 465
            GPT KKLR HLPLL P  G  R+RVG E       +A+ FDDSF HEAWND                              AS A                                 R+ LI DVWHPDLS+ EV+FL+FLQ A ++  KR  E
Sbjct:  207 GPTAKKLRCHLPLLCPAEGC-RIRVGDEIVRMARDKAIIFDDSFNHEAWND-----------------------------HASEA---------------------------------RIALIFDVWHPDLSAREVKFLSFLQTAAMKRAKRVCE 298          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A2P4XEA2_9STRA (Aspartyl/Asparaginyl beta-hydroxylase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEA2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.520e-15
Identity = 55/151 (36.42%), Postives = 63/151 (41.72%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPTNKKLR HLPLL P  G  RLR G+E      G+   FDDSFEHEAWND       TR                                                          R+ LI DVWHPDLS+ E +FL FL+ A LR++K
Sbjct:  196 GPTNKKLRCHLPLLVP-EGQCRLRAGNEVVNVQEGKCFVFDDSFEHEAWNDDD-----TRS---------------------------------------------------------RIVLIIDVWHPDLSAQERKFLNFLRNAQLRMDK 283          
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Match: A0A225WL99_9STRA (Aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WL99_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.490e-15
Identity = 54/151 (35.76%), Postives = 64/151 (42.38%), Query Frame = 1
Query:    1 GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWNDGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQGTAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLEK 453
            GPTNKKLR HLPL+ P  G  RLR G E  +   G+   FDDSFEHEAWN+       TR                                                          R+ LI DVWHPDLS+ E +FLAFL+ A LR++K
Sbjct:  196 GPTNKKLRCHLPLVVP-EGQCRLRAGEEVVDVQEGKCFIFDDSFEHEAWNEDD-----TRS---------------------------------------------------------RIVLIIDVWHPDLSAQERKFLAFLRNARLRMDK 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114042.1123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L745_9PHAE7.470e-3541.89Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
A0A5D6Y1S5_9STRA2.330e-1634.87Asp_Arg_Hydrox domain-containing protein n=1 Tax=P... [more]
G4YIF4_PHYSP5.040e-1636.42Asp_Arg_Hydrox domain-containing protein n=4 Tax=P... [more]
H3GMW2_PHYRM9.470e-1635.76Asp_Arg_Hydrox domain-containing protein n=1 Tax=P... [more]
A0A329T3F9_9STRA9.780e-1636.42Asp_Arg_Hydrox domain-containing protein n=2 Tax=P... [more]
A0A3R7GYD5_9STRA1.270e-1535.76Asp_Arg_Hydrox domain-containing protein n=3 Tax=P... [more]
D0MZ58_PHYIT1.370e-1534.84Aspartyl/Asparaginyl beta-hydroxylase, putative n=... [more]
A0A8J2S5P6_9STRA2.270e-1536.13Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2P4XEA2_9STRA2.520e-1536.42Aspartyl/Asparaginyl beta-hydroxylase n=2 Tax=Phyt... [more]
A0A225WL99_9STRA3.490e-1535.76Aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114042contigH-elongata_contig114042:1045..2112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog42099.EPrPV00000023049
KEGG koko:K00476
EggNOG free text desc.Aspartyl asparaginyl beta-hydroxylase. Source PGD
EggNOG OGs1MG6X@121069,COG3555@1,KOG3696@2759
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-20_001800.1
EC1.14.11.16
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.2736487-CDS-H-elongata_contig114042:1044..14451622929658.2736487-CDS-H-elongata_contig114042:1044..1445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 1045..1445 +
1691679108.724273-CDS-H-elongata_contig114042:1044..14451691679108.724273-CDS-H-elongata_contig114042:1044..1445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 1045..1445 +
1622929658.2892585-CDS-H-elongata_contig114042:1997..21121622929658.2892585-CDS-H-elongata_contig114042:1997..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 1998..2112 +
1691679108.73565-CDS-H-elongata_contig114042:1997..21121691679108.73565-CDS-H-elongata_contig114042:1997..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114042 1998..2112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114042.1123.1prot_H-elongata_contig114042.1123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114042 1045..2112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114042.1123.1

>prot_H-elongata_contig114042.1123.1 ID=prot_H-elongata_contig114042.1123.1|Name=mRNA_H-elongata_contig114042.1123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
GPTNKKLRIHLPLLAPGGGLSRLRVGSETRETCAGRALAFDDSFEHEAWN
DGHCGGVMTRGLPLDGRLREGRSGWNRRQGEASAAAGGGFDRRDHPSCQG
TAGEGGEREEYLGVKPAPRVTLIADVWHPDLSSGEVRFLAFLQQATLRLE
KRFVETKTERIAMSVDLRSFLH
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mRNA from alignment at H-elongata_contig114042:1045..2112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114042.1123.1 ID=mRNA_H-elongata_contig114042.1123.1|Name=mRNA_H-elongata_contig114042.1123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-elongata_contig114042:1045..2112+ (Himanthalia elongata Himel1 dioecious)
GGCCCCACCAACAAGAAGCTCCGGATACACCTGCCGCTCCTCGCCCCGGG GGGTGGCCTGTCTCGCCTGCGCGTGGGCTCGGAGACCAGGGAGACCTGTG CGGGGCGAGCTCTGGCTTTCGACGACTCGTTCGAGCACGAGGCTTGGAAC GACGGACACTGCGGCGGCGTCATGACCAGGGGGTTGCCGCTCGACGGTCG ACTGCGGGAAGGGAGGAGTGGGTGGAACCGCCGACAAGGCGAGGCTTCGG CGGCAGCCGGAGGTGGCTTCGACCGCCGAGATCATCCGTCGTGTCAAGGG ACTGCCGGCGAAGGGGGGGAGAGGGAGGAATATCTTGGGGTTAAGCCTGC ACCGAGGGTCACTCTGATCGCTGACGTGTGGCATCCGGACCTGTCCTCAG GGTTGAGCAATTCGTGGTATTCTTTTTCTTTGCTACCCTCTGCTTGTTTT TTGTGGACTATGACTATTATAGTGAAATCCCAACTCACTTCGTAATATGT CATCACAAGAGAAAATACTACATATTTTATATTAGTGTGCAGCATCCGCG CAAACCGGTTTGACCCTGTAAGGAGACGTCACCGCCTTTAGGTTCCGCAC CACCCGCTCGGTTACGGAGGGTTCCCCTTGGAGATCATGTCGTGGTCGGT CGCGCGCGCGCGTTCGCTACAAGCTCATTACGAAGTGCCGCAAGACCCGT CAACCGTCAACCTCAGTATACATTTACGCCGTAGGTTTTGGCATTACGAT TGAAACCACGCGGGTAATTAAATTAGTCTGTATAGCGTCCTGTATGAATA TCACATTGAGTCCACGTTTTTTTGTTTTTTTTCCGGCCGTTTTTTTGTTT TTTCCGACCGTCGGGGTAGCGTACAAATGCAGCTTCCCCGAAAGAAAGGA CTAATTTCCTTTTACCACCCCCTGTACCCTGCCCCCTTTCCCCACCCCCA AAGCGAGGTTCGATTCCTGGCATTCCTGCAGCAAGCTACGCTCCGGCTCG AGAAACGCTTCGTCGAGACGAAAACTGAACGGATAGCCATGTCTGTCGAT CTACGATCCTTCCTACAT
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Coding sequence (CDS) from alignment at H-elongata_contig114042:1045..2112+

>mRNA_H-elongata_contig114042.1123.1 ID=mRNA_H-elongata_contig114042.1123.1|Name=mRNA_H-elongata_contig114042.1123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig114042:1045..2112+ (Himanthalia elongata Himel1 dioecious)
GGCCCCACCAACAAGAAGCTCCGGATACACCTGCCGCTCCTCGCCCCGGG
GGGTGGCCTGTCTCGCCTGCGCGTGGGCTCGGAGACCAGGGAGACCTGTG
CGGGGCGAGCTCTGGCTTTCGACGACTCGTTCGAGCACGAGGCTTGGAAC
GACGGACACTGCGGCGGCGTCATGACCAGGGGGTTGCCGCTCGACGGTCG
ACTGCGGGAAGGGAGGAGTGGGTGGAACCGCCGACAAGGCGAGGCTTCGG
CGGCAGCCGGAGGTGGCTTCGACCGCCGAGATCATCCGTCGTGTCAAGGG
ACTGCCGGCGAAGGGGGGGAGAGGGAGGAATATCTTGGGGTTAAGCCTGC
ACCGAGGGTCACTCTGATCGCTGACGTGTGGCATCCGGACCTGTCCTCAG
GGGCCCCACCAACAAGAAGCTCCGGATACACCTGCCGCTCCTCGCCCCGG
GGGGTGGCCTGTCTCGCCTGCGCGTGGGCTCGGAGACCAGGGAGACCTGT
GCGGGGCGAGCTCTGGCTTTCGACGACTCGTTCGAGCACGAGGCTTGGAA
CGACGGACACTGCGGCGGCGTCATGACCAGGGGGTTGCCGCTCGACGGTC
GACTGCGGGAAGGGAGGAGTGGGTGGAACCGCCGACAAGGCGAGGCTTCG
GCGGCAGCCGGAGGTGGCTTCGACCGCCGAGATCATCCGTCGTGTCAAGG
GACTGCCGGCGAAGGGGGGGAGAGGGAGGAATATCTTGGGGTTAAGCCTG
CACCGAGGGTCACTCTGATCGCTGACGTGTGGCATCCGGACCTGTCCTCA
GGCGAGGTTCGATTCCTGGCATTCCTGCAGCAAGCTACGCTCCGGCTCGA
GAAACGCTTCGTCGAGACGAAAACTGAACGGATAGCCATGTCTGTCGATC
TACGATCCTTCCTACATCGAGGTTCGATTCCTGGCATTCCTGCAGCAAGC
TACGCTCCGGCTCGAGAAACGCTTCGTCGAGACGAAAACTGAACGGATAG
CCATGTCTGTCGATCTACGATCCTTCCTACAT
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