mRNA_H-elongata_contig11404.1121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11404.1121.1
Unique NamemRNA_H-elongata_contig11404.1121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11404.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11404contigH-elongata_contig11404:281..3203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11404.1121.1prot_H-elongata_contig11404.1121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11404 281..3135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.1355834-CDS-H-elongata_contig11404:280..3941622929658.1355834-CDS-H-elongata_contig11404:280..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11404 281..394 +
1691679108.6696799-CDS-H-elongata_contig11404:280..3941691679108.6696799-CDS-H-elongata_contig11404:280..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11404 281..394 +
1622929658.15003-CDS-H-elongata_contig11404:3015..31351622929658.15003-CDS-H-elongata_contig11404:3015..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11404 3016..3135 +
1691679108.68274-CDS-H-elongata_contig11404:3015..31351691679108.68274-CDS-H-elongata_contig11404:3015..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11404 3016..3135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.164201-UTR-H-elongata_contig11404:3135..32031622929658.164201-UTR-H-elongata_contig11404:3135..3203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11404 3136..3203 +
1691679108.6978667-UTR-H-elongata_contig11404:3135..32031691679108.6978667-UTR-H-elongata_contig11404:3135..3203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11404 3136..3203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11404.1121.1

>prot_H-elongata_contig11404.1121.1 ID=prot_H-elongata_contig11404.1121.1|Name=mRNA_H-elongata_contig11404.1121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
KGYPGHQLHHQPRGRRKSIAAGRKGLRTANKSTPHLGQDGLGRTHYKRPE
RRDDTPGAGALSHLRAVAAHQGCFILF*
back to top

mRNA from alignment at H-elongata_contig11404:281..3203+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11404.1121.1 ID=mRNA_H-elongata_contig11404.1121.1|Name=mRNA_H-elongata_contig11404.1121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2923bp|location=Sequence derived from alignment at H-elongata_contig11404:281..3203+ (Himanthalia elongata Himel1 dioecious)
AAGGGGTACCCTGGACATCAACTACACCATCAGCCACGGGGTCGACGGAA
GTCTATCGCCGCGGGCCGGAAAGGACTCCGGACCGCCAACAAGAGTACTC
CCCATCTGGGTCAGGTCTGGCGCATGTTGCTCCGGTACACTTGGCGTAGC
CCTAGGCGAGCTAGCACGGCCAATGCTATTCACACCTGTCCCAATTATTA
TTTGTAATATTATTATTATTATTATTATTATTATTATTATTATTTTTATT
TAAAAGACTTTAGTTATTATTATTATTATTAAACTTAGATACCCCGTCTT
TTAAATTAACAGAAGTAGTCATTAAAGCAACCGGTCCTTTAGATTTCGAC
ATATTTTTTATTTAGGATTTTTGACATCAAACCGAATGGTAAGAATGGAG
AGTACACTGAACGTTTTTTCTTCCTTCCAGAGGGTATTTTTCTACCTTGC
GAACACAGGCTAGATTTTGATATCAGTTACGTATGGTCAGTACTCTTAGG
TCAATCCTGAGTGCTTCAGGTCACGCAATTACGAACCGATGACGTTTACT
ACTGAGAGTCCGCCGACACTGAGCCAATAGTCCTCAAGGTAGCGTGAGTA
ACGGGTGCAGCCTATTGAGGTAACCTCATGGACCATCATTGTACGCCTTT
CTTTCTCACACTTGTTATGGATAGAGTGGGCATGTGCGATCCAAGTACAT
ACAGTAGTCTTAACCCTTTATATGAAGTAAGAATGTGAGATTATCGGGTT
ATATACCAACATTTTTTTGAATTGACAATCAACGTGAGAGCCAGGGAAGG
GTCGTAGTGACGAAAATATTATGCTTGGAGGGAACATATGCTTCGTAACT
GCTGGCTGGGGGGACTTCAGGGTTCGTGCGACCATCGGTCTGAGTTCATC
AACACCCATATCACGTAAAACGGTAGAACAGTTATCTCCACCAGTAGATA
CGTTTTGCGTTTGTAGCGCAAGGTCGTCGGAGGAGCGACAGAAGGCGAAG
GATAACGATACGACGCCCCACAGCCATTCCTTGTCATGATAGGAAATCAA
TTTCTTTTCTTCTCGACGACGCAACTCATCACAGGACGGTCGTCCGGCAC
ACGATTTGCGAAACTCTATTGGAGGTTCAAACCGCTCCTCATAGAACATG
CTTTTGCTTTCACCCATGGTCGATCTTCTCAGTTTATAGCCAGTATAATA
CCCTAAAAACTTAACATACAAAATTGTTAAATATTTTCTCGAGACTTTTT
ACTTTCACGTGTTTCAAGGGTACTTTCGTCGGATTTTCAAACCTCACACG
TACTATACTACAGCCTTAAGCGTATGTGGTTTTGAATATAACTCGGAAAG
GTCTCTGCCCGAGCAGTCGTCTGTCCCTATTTCATATCTCATCAGCGAAG
ATTAACGACTTTTGTCCATCCTTCGAATTATATTCAGTTGATATAAAATT
CTCCTCGCTAACTGAAGTATAACGGCAAAAATGGAACACGCATCAAGTCC
AATACCACCGATGCCCCAGCACTCCTATAAGTTGAACTAGGCATAACTCC
CCATAAAGGGGGGACTTTCGCAAACCGGCGTGGCGCCCCCTTACGTATTT
TGCCGGTTTGCGTAATTTAATGTAAAATAATAAAAGTGATAAAACAACTT
CACAAATGCATAAACCGGACGCACCGGTCGCGTGCTCACCTTTGTCTTAA
AGACGACCGCGGCGTGAACCACCGTCGCCCTCGTGATAACAACTATGGAC
TTAGCTCTCGTTTTCATACCGGCAGGGCGCAGGAGCATCCACTACCACCC
CGAAACTGCACTTCAGTACTTCAGATGTCGCTTCCTTCGAACGTATAATC
GAGGCACCGACCCCAAATCCGCTAAACCGTGCAGGAGTAGTTGGCTTGTT
ACAGAAACGCATACACGCTACCATTACCACACTGCATGCGTTTCGAAGGG
CACAAGCCAAGGGGGGAAGCCATGCACTGTAGAAGCCGGGTAGCTAAGTG
TCGGCCCAACGCTTGACGCTCCCTTTGAACGTATAGCCGAAGCGCCGATC
CGGAATCCGCTAAATCACGCAAGAGTAAACGACGCCACCAATACTACAGC
ATGCAATGCGTTTGGAAGGGCACATGCCAAGGGGAGAACCCATGCATTGT
AGAGGGTGTGTAGCTAAAGGTCGGTACGGTGATTCACCAACTACCGCTGC
CACTTCCCTAAAGCTACCACCGATTGCCGCCCTAGTGCCCCCCTTCGCCC
GCGTTGCCGTAGCCGTCAAGAACCACACGACCACCGTACCAGGCCCGGTG
GAAGTGGCAACACAACAAGCGGCCGACGGCCTTTTACAGGGATGTGCCTC
GTGCGACCGACGTTAATCCGACTGTAGAATACCTTACCAGGCCCGGTGCA
AGTGGCAACACAACAAGCGACCGACGGCCTTTTATAGGGATGTGCCTCGT
TCGACCGACGTTAATCGGACTGTAGAATAGCCCGAACGACCATCATTGGT
CTTCCTCGCCTGACGATCGTAGGTTGCGGCCATTTCCCTAGCGGATGACG
AAACGTCGTGGTGAGTTAGAGTAAGAAATACATTCACGCCTTTAAAGTGT
AACGGAGTCCCCGCTCTTTGGCACACCTACAACCTCAGGGGGCGACCCAC
TTAACGCCCCACATCAAACCGCTTGCGCCCTTATTTTCCGACGATCCCCC
TACTCCGATTCCCGATATGTTTGACTTTCCAAAAGGACGGACTCGGGCGC
ACGCACTATAAGCGACCAGAACGGAGAGATGACACGCCAGGAGCTGGAGC
ACTGTCTCACCTAAGGGCTGTCGCGGCGCACCAAGGATGCTTCATTTTGT
TTTGATTCAGGGGATGATGTGTTGTGGAGAATGACCCTGAGTAGCCGACA
TGCCTCATGGTTCGTCTTCGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11404:281..3203+

>mRNA_H-elongata_contig11404.1121.1 ID=mRNA_H-elongata_contig11404.1121.1|Name=mRNA_H-elongata_contig11404.1121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig11404:281..3203+ (Himanthalia elongata Himel1 dioecious)
AAGGGGTACCCTGGACATCAACTACACCATCAGCCACGGGGTCGACGGAA
GTCTATCGCCGCGGGCCGGAAAGGACTCCGGACCGCCAACAAGAGTACTC
CCCATCTGGGTCAGAAGGGGTACCCTGGACATCAACTACACCATCAGCCA
CGGGGTCGACGGAAGTCTATCGCCGCGGGCCGGAAAGGACTCCGGACCGC
CAACAAGAGTACTCCCCATCTGGGTCAGGACGGACTCGGGCGCACGCACT
ATAAGCGACCAGAACGGAGAGATGACACGCCAGGAGCTGGAGCACTGTCT
CACCTAAGGGCTGTCGCGGCGCACCAAGGATGCTTCATTTTGTTTTGAGA
CGGACTCGGGCGCACGCACTATAAGCGACCAGAACGGAGAGATGACACGC
CAGGAGCTGGAGCACTGTCTCACCTAAGGGCTGTCGCGGCGCACCAAGGA
TGCTTCATTTTGTTTTGA
back to top