mRNA_H-elongata_contig11401.1116.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11401.1116.1
Unique NamemRNA_H-elongata_contig11401.1116.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11401.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11401contigH-elongata_contig11401:5246..5787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size510
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11401.1116.1prot_H-elongata_contig11401.1116.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11401 5330..5691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.6902514-UTR-H-elongata_contig11401:5245..53291622929657.6902514-UTR-H-elongata_contig11401:5245..5329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 5246..5329 +
1691679108.5173178-UTR-H-elongata_contig11401:5245..53291691679108.5173178-UTR-H-elongata_contig11401:5245..5329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 5246..5329 +
1622929657.7412639-UTR-H-elongata_contig11401:5691..57871622929657.7412639-UTR-H-elongata_contig11401:5691..5787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 5692..5787 +
1691679108.5427372-UTR-H-elongata_contig11401:5691..57871691679108.5427372-UTR-H-elongata_contig11401:5691..5787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 5692..5787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.7106223-CDS-H-elongata_contig11401:5329..54641622929657.7106223-CDS-H-elongata_contig11401:5329..5464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 5330..5464 +
1691679108.5257866-CDS-H-elongata_contig11401:5329..54641691679108.5257866-CDS-H-elongata_contig11401:5329..5464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 5330..5464 +
1622929657.7251081-CDS-H-elongata_contig11401:5496..56911622929657.7251081-CDS-H-elongata_contig11401:5496..5691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 5497..5691 +
1691679108.5343025-CDS-H-elongata_contig11401:5496..56911691679108.5343025-CDS-H-elongata_contig11401:5496..5691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 5497..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11401.1116.1

>prot_H-elongata_contig11401.1116.1 ID=prot_H-elongata_contig11401.1116.1|Name=mRNA_H-elongata_contig11401.1116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MVDLYLLYLLTLCPYLLCPDTISGLMLTCVSQDCTMSENVFKAVTPIYYR
SKINEKIPSVGKQRTVYSVTSSKSEKEPRISGMYTVAVKRTNRDDPRSLS
DLQLPKTRR*
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mRNA from alignment at H-elongata_contig11401:5246..5787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11401.1116.1 ID=mRNA_H-elongata_contig11401.1116.1|Name=mRNA_H-elongata_contig11401.1116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig11401:5246..5787+ (Himanthalia elongata Himel1 dioecious)
CCCCGATTCACGCCTCCTTACAATTTCTCATCGCGATGCAAGTTCAGCCC
TACTCCAACCAATAAACTTTTGTCAACAAATACAATGGTTGATCTTTACT
TACTGTACCTTCTTACGCTGTGCCCATATTTGCTTTGCCCAGATACGATC
TCAGGATTGATGTTGACATGCGTGTCTCAGGATTGTACCATGAGTGAAAA
TGTTTTCAAAGCTGTAACGGTTGAGCGATGATATCGATTTCGCGACGAGA
GCCGATCTACTATAGATCCAAAATCAATGAGAAAATACCGTCCGTGGGTA
AACAACGTACCGTATACAGTGTTACATCTTCTAAAAGTGAGAAGGAGCCT
AGAATTAGCGGAATGTACACGGTTGCCGTGAAAAGGACAAACCGTGACGA
CCCACGGTCGCTCTCTGACCTACAGCTACCGAAAACAAGGCGTTAACCCT
TATGGAACTCGATCTGTTTTTTAAACACTAAAATCAATATAAAACTTGAA
ATCCAGTCCCAAAAGGGTTAAACATGGACGGTTGGGCTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig11401:5246..5787+

>mRNA_H-elongata_contig11401.1116.1 ID=mRNA_H-elongata_contig11401.1116.1|Name=mRNA_H-elongata_contig11401.1116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig11401:5246..5787+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGATCTTTACTTACTGTACCTTCTTACGCTGTGCCCATATTTGCT
TTGCCCAGATACGATCTCAGGATTGATGTTGACATGCGTGTCTCAGGATT
GTACCATGAGTGAAAATGTTTTCAAAGCTGTAACGATGGTTGATCTTTAC
TTACTGTACCTTCTTACGCTGTGCCCATATTTGCTTTGCCCAGATACGAT
CTCAGGATTGATGTTGACATGCGTGTCTCAGGATTGTACCATGAGTGAAA
ATGTTTTCAAAGCTGTAACGCCGATCTACTATAGATCCAAAATCAATGAG
AAAATACCGTCCGTGGGTAAACAACGTACCGTATACAGTGTTACATCTTC
TAAAAGTGAGAAGGAGCCTAGAATTAGCGGAATGTACACGGTTGCCGTGA
AAAGGACAAACCGTGACGACCCACGGTCGCTCTCTGACCTACAGCTACCG
AAAACAAGGCGTTAACCGATCTACTATAGATCCAAAATCAATGAGAAAAT
ACCGTCCGTGGGTAAACAACGTACCGTATACAGTGTTACATCTTCTAAAA
GTGAGAAGGAGCCTAGAATTAGCGGAATGTACACGGTTGCCGTGAAAAGG
ACAAACCGTGACGACCCACGGTCGCTCTCTGACCTACAGCTACCGAAAAC
AAGGCGTTAA
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