mRNA_H-elongata_contig113980.1114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113980.1114.1
Unique NamemRNA_H-elongata_contig113980.1114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            GF++ + DPCVFR+++ G VV + V+Y+DD+LV +A + D E+   +L   FP+KDLGE ++Y  C I  D
Sbjct:   34 GFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMD 103
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.820e-11
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPCVFR+++ G VV + V+Y+DD+LV +A + D E+   +L   FP+KDLGE ++Y  C I  D
Sbjct:  103 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMD 172
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.430e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct:   74 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 143
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct:  287 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 356
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct:  543 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 612
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct:  467 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 536
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.630e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct:  720 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 789
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.650e-11
Identity = 28/71 (39.44%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPC+FR+++ G VV + V+Y+DD+++ SAT+ + E+ + +L+  FP+KDLG+ ++Y  C I  D
Sbjct: 1182 GYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVD 1251
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.400e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPCVFR+++ G VV + V+Y+DD+LV +A + + E+   +L   FP+KDLGE ++Y  C I  D
Sbjct:   34 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMD 103
[Close]
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.430e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRSWFPIKDLGEASYYLECHITWD 213
            G+++ + DPCVFR+++ G VV + V+Y+DD+LV +A + + E+   +L   FP+KDLGE ++Y  C I  D
Sbjct:   34 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113980.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L296_9PHAE3.600e-1245.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.820e-1143.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE3.430e-1139.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE3.590e-1139.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE3.590e-1139.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE3.600e-1139.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE3.630e-1139.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE3.650e-1139.44CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5KW89_9PHAE4.400e-1142.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE4.430e-1142.25Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113980contigH-elongata_contig113980:1686..1898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.0764108-CDS-H-elongata_contig113980:1685..18981622929657.0764108-CDS-H-elongata_contig113980:1685..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113980 1686..1898 +
1691679108.299337-CDS-H-elongata_contig113980:1685..18981691679108.299337-CDS-H-elongata_contig113980:1685..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113980 1686..1898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113980.1114.1prot_H-elongata_contig113980.1114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113980 1686..1898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113980.1114.1

>prot_H-elongata_contig113980.1114.1 ID=prot_H-elongata_contig113980.1114.1|Name=mRNA_H-elongata_contig113980.1114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
GFQRSQADPCVFRRILHGVVVVVNVVYIDDLLVVSATKRDEEQAVRNLRS
WFPIKDLGEASYYLECHITWD
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mRNA from alignment at H-elongata_contig113980:1686..1898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113980.1114.1 ID=mRNA_H-elongata_contig113980.1114.1|Name=mRNA_H-elongata_contig113980.1114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig113980:1686..1898+ (Himanthalia elongata Himel1 dioecious)
GGTTTCCAGAGATCTCAAGCTGACCCATGCGTATTCCGGCGGATTCTCCA
CGGGGTAGTAGTAGTCGTCAATGTGGTCTACATCGACGACCTGCTGGTTG
TTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGAACCTGCGCTCC
TGGTTCCCCATCAAGGATCTGGGGGAGGCTTCGTATTACCTGGAATGCCA
CATCACGTGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig113980:1686..1898+

>mRNA_H-elongata_contig113980.1114.1 ID=mRNA_H-elongata_contig113980.1114.1|Name=mRNA_H-elongata_contig113980.1114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig113980:1686..1898+ (Himanthalia elongata Himel1 dioecious)
GGTTTCCAGAGATCTCAAGCTGACCCATGCGTATTCCGGCGGATTCTCCA
CGGGGTAGTAGTAGTCGTCAATGTGGTCTACATCGACGACCTGCTGGTTG
TTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGAACCTGCGCTCC
TGGTTCCCCATCAAGGATCTGGGGGAGGCTTCGTATTACCTGGAATGCCA
CATCACGTGGGACGGTTTCCAGAGATCTCAAGCTGACCCATGCGTATTCC
GGCGGATTCTCCACGGGGTAGTAGTAGTCGTCAATGTGGTCTACATCGAC
GACCTGCTGGTTGTTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAG
GAACCTGCGCTCCTGGTTCCCCATCAAGGATCTGGGGGAGGCTTCGTATT
ACCTGGAATGCCACATCACGTGGGAC
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