mRNA_H-elongata_contig113976.1113.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113976.1113.1
Unique NamemRNA_H-elongata_contig113976.1113.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113976.1113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113976contigH-elongata_contig113976:1807..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.0181155-UTR-H-elongata_contig113976:1806..18151622929657.0181155-UTR-H-elongata_contig113976:1806..1815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113976 1807..1815 +
1691679108.2835195-UTR-H-elongata_contig113976:1806..18151691679108.2835195-UTR-H-elongata_contig113976:1806..1815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113976 1807..1815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.0380368-CDS-H-elongata_contig113976:1815..21061622929657.0380368-CDS-H-elongata_contig113976:1815..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113976 1816..2106 +
1691679108.2910607-CDS-H-elongata_contig113976:1815..21061691679108.2910607-CDS-H-elongata_contig113976:1815..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113976 1816..2106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113976.1113.1prot_H-elongata_contig113976.1113.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113976 1816..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113976.1113.1

>prot_H-elongata_contig113976.1113.1 ID=prot_H-elongata_contig113976.1113.1|Name=mRNA_H-elongata_contig113976.1113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MELRLKGTSRTKRVASRRALKDGDWTPERAEVWDNYREMLMNAVELSFRR
PDDCRALMFSDASNLFWGCCLTQVPKEELVAGLNIMDMSHEPLAFLS
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mRNA from alignment at H-elongata_contig113976:1807..2106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113976.1113.1 ID=mRNA_H-elongata_contig113976.1113.1|Name=mRNA_H-elongata_contig113976.1113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig113976:1807..2106+ (Himanthalia elongata Himel1 dioecious)
GCGCCGTTGATGGAACTGCGGCTGAAGGGCACGAGCCGAACAAAACGTGT
GGCGTCGCGGCGGGCTTTAAAGGATGGCGATTGGACGCCGGAGCGGGCGG
AAGTCTGGGATAACTATCGTGAGATGTTAATGAACGCGGTTGAGCTGAGC
TTCCGGCGGCCGGACGACTGCCGCGCTTTAATGTTTTCGGATGCGAGCAA
CCTGTTTTGGGGGTGTTGCTTGACACAAGTACCGAAGGAGGAGCTGGTGG
CGGGGTTAAATATAATGGATATGAGCCATGAGCCTCTCGCTTTCCTGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig113976:1807..2106+

>mRNA_H-elongata_contig113976.1113.1 ID=mRNA_H-elongata_contig113976.1113.1|Name=mRNA_H-elongata_contig113976.1113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig113976:1807..2106+ (Himanthalia elongata Himel1 dioecious)
ATGGAACTGCGGCTGAAGGGCACGAGCCGAACAAAACGTGTGGCGTCGCG
GCGGGCTTTAAAGGATGGCGATTGGACGCCGGAGCGGGCGGAAGTCTGGG
ATAACTATCGTGAGATGTTAATGAACGCGGTTGAGCTGAGCTTCCGGCGG
CCGGACGACTGCCGCGCTTTAATGTTTTCGGATGCGAGCAACCTGTTTTG
GGGGTGTTGCTTGACACAAGTACCGAAGGAGGAGCTGGTGGCGGGGTTAA
ATATAATGGATATGAGCCATGAGCCTCTCGCTTTCCTGAGTATGGAACTG
CGGCTGAAGGGCACGAGCCGAACAAAACGTGTGGCGTCGCGGCGGGCTTT
AAAGGATGGCGATTGGACGCCGGAGCGGGCGGAAGTCTGGGATAACTATC
GTGAGATGTTAATGAACGCGGTTGAGCTGAGCTTCCGGCGGCCGGACGAC
TGCCGCGCTTTAATGTTTTCGGATGCGAGCAACCTGTTTTGGGGGTGTTG
CTTGACACAAGTACCGAAGGAGGAGCTGGTGGCGGGGTTAAATATAATGG
ATATGAGCCATGAGCCTCTCGCTTTCCTGAGT
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