mRNA_H-elongata_contig113947.1109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113947.1109.1
Unique NamemRNA_H-elongata_contig113947.1109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: D8LM03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM03_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.830e-38
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQTSST 273
            IFAVLLF+YE VRV+  CER  QIM KNFGFFFGAKGRGLYLVF GFL +PL   LS WT  V +GWG++TVLAYM+RPEWFE+PK   +T
Sbjct:   80 IFAVLLFMYEFVRVMGNCERPKQIMTKNFGFFFGAKGRGLYLVFVGFLNFPLDLTLSFWTGVVTLGWGVLTVLAYMTRPEWFEVPKPAQNT 170
[Close]
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A836CK83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK83_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.760e-14
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    4 FAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQT 264
            FAVLLF YE++R +       ++MR+NFG+F+G  GRG YL+F GFL + L   +   T  V +GWG + +     +PEWF + K T
Sbjct:   83 FAVLLFSYEVLRWVPNAN-LDEMMRRNFGWFYGNMGRGFYLIFVGFLNFGLHGTVPLATGIVCLGWGALCIAVGFYKPEWFAVEKST 168
[Close]
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A7S4A8Z0_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8Z0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.420e-6
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSR-----LSTWTTFVMIGWGIITVLAYMSRPE 240
            +FAVLLFLYEL+   +  ++ ++ MRKNFGF +G +G+GLYL+F  FL + L        L+  T    +  G++ +     RPE
Sbjct:   91 LFAVLLFLYELMWW-SPMKKLNKDMRKNFGFMYGLRGKGLYLIFVAFLCFGLGKDAKVAILNYCTGASFLAGGLLHMFVIFFRPE 174
[Close]
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A7S2W1J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1J8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.080e-6
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    4 FAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTW----TTFVMIGWGIITVLAYMSRPEWFE 249
            F++LLF YEL+  ++     ++I+RKNFGF +G KG+GLYL+F  FL   L +    W    T    +  GI+ +     RPE  E
Sbjct:   96 FSLLLFTYELMWWIS-VPTINRIVRKNFGFMYGFKGKGLYLIFVAFLCVGLDNGGEEWLRYFTGVAFLSGGILHLFLVCFRPEIVE 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM03_ECTSI2.830e-3870.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CK83_9STRA1.760e-1442.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A8Z0_9STRA3.420e-638.82Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2W1J8_9STRA6.080e-638.37Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113947contigH-elongata_contig113947:1361..2029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.2e-30
Seed eggNOG ortholog2880.D8LM03
EggNOG OGs2D0JF@1,2SEFC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-14_002340.1
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.6540725-CDS-H-elongata_contig113947:1360..15141622929656.6540725-CDS-H-elongata_contig113947:1360..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113947 1361..1514 -
1691679108.1816077-CDS-H-elongata_contig113947:1360..15141691679108.1816077-CDS-H-elongata_contig113947:1360..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113947 1361..1514 -
1622929656.6854186-CDS-H-elongata_contig113947:1898..20291622929656.6854186-CDS-H-elongata_contig113947:1898..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113947 1899..2029 -
1691679108.1940882-CDS-H-elongata_contig113947:1898..20291691679108.1940882-CDS-H-elongata_contig113947:1898..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113947 1899..2029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113947.1109.1prot_H-elongata_contig113947.1109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113947 1361..2029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113947.1109.1

>prot_H-elongata_contig113947.1109.1 ID=prot_H-elongata_contig113947.1109.1|Name=mRNA_H-elongata_contig113947.1109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLW
PLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQTSSTGES*
back to top

mRNA from alignment at H-elongata_contig113947:1361..2029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113947.1109.1 ID=mRNA_H-elongata_contig113947.1109.1|Name=mRNA_H-elongata_contig113947.1109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at H-elongata_contig113947:1361..2029- (Himanthalia elongata Himel1 dioecious)
ATCTTCGCGGTGTTGCTCTTTCTGTATGAGTTGGTGCGAGTGCTTACGCG
CTGCGAGCGGGCCCACCAAATCATGCGCAAGAACTTTGGATTCTTCTTTG
GTGCAAAGGGGCGAGGGCTCTATCTCGTTTTGTGAGTTCGTTTGGCGCAT
CGGTCGGCGAAGCCCTGTAACTCTGCGGTATATAGTACCGGTAGTGCCAG
AAATATTTCCGGTGGCAGACCATGCCGAAATCCTTCGTTTCCGCCTCCGC
AGACGGGTACAGTAACTGGCGGCTTTCGGGAGATCGGGGGGAGGGGGGGG
TAGACCTCAGCTCCCTCAAGGTAGAACGCTGCCGTGGAAACGANNNNNNN
NNNGGGGGGGGGGGGAGGGCACGGGGGGGTTGGGGGGAGGGGGGGGGGGG
GGGGGGGGGGGTAGACCTCAGCTCCCTCAAGTTTGAACGCTGCCGTGGAA
ACGAATTTGAGCCTTTGTCCCCTTGTTTCGCGTCGATCTTTTGTTTTCCC
ATTTCGTTTTGGTAGCGCCGGCTTTCTACTCTGGCCCCTCTCTTCTCGCT
TGAGCACTTGGACGACGTTCGTCATGATCGGGTGGGGCATCATTACCGTG
CTAGCGTACATGAGCCGGCCAGAATGGTTCGAGATTCCCAAGCAAACCTC
AAGCACTGGAGAGTCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig113947:1361..2029-

>mRNA_H-elongata_contig113947.1109.1 ID=mRNA_H-elongata_contig113947.1109.1|Name=mRNA_H-elongata_contig113947.1109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig113947:1361..2029- (Himanthalia elongata Himel1 dioecious)
ATCTTCGCGGTGTTGCTCTTTCTGTATGAGTTGGTGCGAGTGCTTACGCG
CTGCGAGCGGGCCCACCAAATCATGCGCAAGAACTTTGGATTCTTCTTTG
GTGCAAAGGGGCGAGGGCTCTATCTCGTTTTATCTTCGCGGTGTTGCTCT
TTCTGTATGAGTTGGTGCGAGTGCTTACGCGCTGCGAGCGGGCCCACCAA
ATCATGCGCAAGAACTTTGGATTCTTCTTTGGTGCAAAGGGGCGAGGGCT
CTATCTCGTTTTCGCCGGCTTTCTACTCTGGCCCCTCTCTTCTCGCTTGA
GCACTTGGACGACGTTCGTCATGATCGGGTGGGGCATCATTACCGTGCTA
GCGTACATGAGCCGGCCAGAATGGTTCGAGATTCCCAAGCAAACCTCAAG
CACTGGAGAGTCATGACGCCGGCTTTCTACTCTGGCCCCTCTCTTCTCGC
TTGAGCACTTGGACGACGTTCGTCATGATCGGGTGGGGCATCATTACCGT
GCTAGCGTACATGAGCCGGCCAGAATGGTTCGAGATTCCCAAGCAAACCT
CAAGCACTGGAGAGTCATGA
back to top