mRNA_H-elongata_contig113885.1105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113885.1105.1
Unique NamemRNA_H-elongata_contig113885.1105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: D7G7G0_ECTSI (Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.770e-23
Identity = 50/77 (64.94%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 NPVQCQMVFAQSEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLCLLGK 231
            N +Q    +   EG  SQ+NACLVKVA +VSKD   P L  AA IYEKLGRSC+EKKLL MNAKGYWLQ GLCLL +
Sbjct:  140 NSLQQASEYLAGEGCVSQSNACLVKVAGIVSKDAENPNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQAGLCLLAQ 216
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S4TA13_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA13_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.220e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   31 QSEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            + E S SQ+N C  KVA + S  ++PP L RAA +YE+LGR CLE  LL+ NAKGY+LQ+ +C
Sbjct:  191 EMENSKSQSNMCRAKVAELCSAALDPPDLLRAAQLYEELGRHCLETNLLKFNAKGYFLQSVMC 253
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S2IBT3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBT3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.360e-12
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   31 QSEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            + E + SQ+N C  KVA + S  ++PP L RAA +YE+LGR CLE  LL+ NAKGY+LQ+ +C
Sbjct:  164 EMENAKSQSNTCRAKVAELCSAALDPPDLLRAAQLYEELGRHCLETNLLKFNAKGYFLQSVMC 226
[Close]
BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S2WGN8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGN8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.500e-12
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   49 SQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLCLLG 228
            SQA+ C  KVA ++S  M+PP L RAA IYE LG+ CL+  LL+ NAKGY+LQ  LC LG
Sbjct:  163 SQASTCKAKVAELLSAAMDPPDLIRAAEIYEDLGKQCLDNNLLKYNAKGYFLQAILCHLG 222
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S1YCT5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCT5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.730e-11
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   31 QSEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            ++E S +Q + C+VK+A + S +++PP L RAA +Y+ LGRS L+  +L+ +AKGY+LQT LC
Sbjct:  158 EAENSPAQKSTCIVKIAELCSAELDPPDLLRAAGLYDSLGRSSLDSNMLKFHAKGYFLQTILC 220
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S2UGK7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGK7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.390e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   37 EGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLCLLG 228
            E S  QA +C+ KVA + S  ++PP+L RAA IY++LGR CLE  +L+ NAK Y+LQ   C LG
Sbjct:  164 EDSKGQAASCMTKVAELCSAALDPPELLRAAKIYDELGRRCLESNMLKFNAKMYFLQAIFCHLG 227
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S1CZ61_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZ61_CYCTE)

HSP 1 Score: 66.2 bits (160), Expect = 4.840e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   34 SEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLCLLGK 231
            +E +  QA+ CL KVA + S  ++PP L RAA +Y+ LGR CL+  LL+ NAKGY+LQ   C L +
Sbjct:  171 AEDANGQASQCLAKVAELCSVVLDPPDLTRAAQLYDDLGRRCLDSNLLKFNAKGYFLQAIFCHLAQ 236
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: B7G602_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G602_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 8.780e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   37 EGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            E S SQA+ C  KVA + S  ++PP L RAA +Y++LGR+CL+  LL+ NAK Y+LQ  LC
Sbjct:  162 EDSKSQASQCRAKVAELCSAALDPPDLLRAAGLYDELGRACLDSNLLKYNAKSYFLQAILC 222
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BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: A0A7S0A1I6_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A1I6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.180e-10
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   37 EGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            E S S  + CL KVA + S  ++PP L +AA IYE LG  CLE  LL+ NAK Y+LQ+  C
Sbjct:   48 EDSKSAQSQCLAKVAELYSAALDPPDLFKAASIYETLGTQCLESNLLKYNAKAYFLQSVFC 108
[Close]
BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Match: B8C7V6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7V6_THAPS)

HSP 1 Score: 59.3 bits (142), Expect = 1.440e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   64 CLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEKKLLQMNAKGYWLQTGLC 219
            CL KVA + S  +NPP+L RAA IYE LGR CLE  LL+ NAK ++L   +C
Sbjct:  163 CLQKVAELSSGALNPPELLRAAEIYENLGRQCLESNLLKYNAKSHFLNGVMC 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113885.1105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G7G0_ECTSI1.770e-2364.94Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A7S4TA13_9STRA8.220e-1353.97Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2IBT3_9STRA1.360e-1252.38Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2WGN8_9STRA2.500e-1258.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1YCT5_9STRA1.730e-1147.62Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2UGK7_9STRA3.390e-1151.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1CZ61_CYCTE4.840e-1148.48Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7G602_PHATC8.780e-1152.46Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0A1I6_9STRA6.180e-1050.82Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
B8C7V6_THAPS1.440e-855.77Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113885contigH-elongata_contig113885:230..1263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G7G0
Preferred nameNAPB
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
GOsGO:0000149,GO:0000278,GO:0000281,GO:0000910,GO:0001505,GO:0001654,GO:0001671,GO:0001745,GO:0002009,GO:0002090,GO:0002165,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007274,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010646,GO:0010807,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019222,GO:0019898,GO:0019905,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030054,GO:0030100,GO:0030154,GO:0030182,GO:0030234,GO:0030424,GO:0031090,GO:0031201,GO:0031323,GO:0031410,GO:0031629,GO:0031982,GO:0032386,GO:0032501,GO:0032502,GO:0032781,GO:0032879,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0034214,GO:0034613,GO:0034622,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035249,GO:0035295,GO:0035494,GO:0036465,GO:0040007,GO:0042144,GO:0042886,GO:0042995,GO:0043005,GO:0043085,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043462,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045026,GO:0045055,GO:0045176,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0046928,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048259,GO:0048280,GO:0048284,GO:0048488,GO:0048489,GO:0048513,GO:0048526,GO:0048563,GO:0048569,GO:0048589,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051301,GO:0051336,GO:0051345,GO:0051588,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055044,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060560,GO:0060562,GO:0060589,GO:0060590,GO:0060627,GO:0061024,GO:0061025,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070044,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0090596,GO:0097458,GO:0097479,GO:0097480,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098772,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099177,GO:0099500,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0150034,GO:1902803,GO:1903047,GO:1903305,GO:1903530,GO:2000300
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsKOG1586@1,KOG1586@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113885.1105.1prot_H-elongata_contig113885.1105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113885 230..1245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.299071-CDS-H-elongata_contig113885:229..3641622929656.299071-CDS-H-elongata_contig113885:229..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113885 230..364 -
1691679108.0300643-CDS-H-elongata_contig113885:229..3641691679108.0300643-CDS-H-elongata_contig113885:229..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113885 230..364 -
1622929656.3183682-CDS-H-elongata_contig113885:1167..12451622929656.3183682-CDS-H-elongata_contig113885:1167..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113885 1168..1245 -
1691679108.0425446-CDS-H-elongata_contig113885:1167..12451691679108.0425446-CDS-H-elongata_contig113885:1167..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113885 1168..1245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.3335764-UTR-H-elongata_contig113885:1245..12631622929656.3335764-UTR-H-elongata_contig113885:1245..1263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113885 1246..1263 -
1691679108.0602696-UTR-H-elongata_contig113885:1245..12631691679108.0602696-UTR-H-elongata_contig113885:1245..1263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113885 1246..1263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113885.1105.1

>prot_H-elongata_contig113885.1105.1 ID=prot_H-elongata_contig113885.1105.1|Name=mRNA_H-elongata_contig113885.1105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MVFAQSEGSTSQANACLVKVAAMVSKDMNPPQLGRAAVIYEKLGRSCLEK
KLLQMNAKGYWLQTGLCLLGK
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mRNA from alignment at H-elongata_contig113885:230..1263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113885.1105.1 ID=mRNA_H-elongata_contig113885.1105.1|Name=mRNA_H-elongata_contig113885.1105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig113885:230..1263- (Himanthalia elongata Himel1 dioecious)
AACCCTGTCCAATGTCAAATGGTTTTTGCACAGAGCGAGGGCTCCACCTC
TCAGGCAAACGCGTGCTTGGTGAAGGTGGCGGCCATGGTATCTAAGGTGG
GAGGAATCTACGGAGAAAGCTTTTATGCAATGTGCAGCAATATCATACTT
TAGAGTGGCATTACAATATCATTCGAGTGTAGTATAGTATAGTATAGTAC
TAGCTAGCTATATCGCATATCGTGTAGGGTGCGCGACTGGAGGCCTCTCG
TCGTTGAACTGCGGGGTTCTCGTGTTAGTCTGTTTTTGTGATCATCACAT
TTTGTAATTGTATGGTCATTTGGTAATTGTATGGTCATTTGGTAATGGTA
ATGGTGATGGTATGGTATTAATGGTATGGTCATAGTAATGGTATGGTAAT
GGTATGGTAATGGTATGGTAATGGTATGGTAATGGTGATGGTATTAATGG
TATGGTCATAGTAATGGTAATAGTAATGGTGATGACATCTATCTATCTGA
TCGAAGAATCGATGGGGTTAGGGATAGGTCATGAACGTCCTATAAACACC
TTATGATAGCTATAAACACCTTATGATAGCTATAAACACCTTATGATAGC
TATAAACACCTTATGTTAGCTTGCATGACAGAGTGTAAGAAATAGTAAGA
GCGATAACATCTAACATCTAACGTTTACCATCTAATGTGCCATCTAATGT
ACCATATTATGGATTAAATTGGTGGTGGGCTACGACGATCGAACGTGTCC
TGCCGACGTGTACTAAATACAGTATACTAAATTTTCAGTACCGAGTATAG
TATAGTATAGTGCAGTACCTAATACATATTGGAAATAGTTAATAGTTAAT
ATACTGTACTATAGTATGGTACCTAACTCTCGCGTGGACGGTGTAACAGG
ACATGAACCCTCCTCAGCTCGGTCGTGCGGCGGTGATCTACGAAAAGCTT
GGGAGATCTTGCTTGGAAAAGAAGCTGCTGCAGATGAACGCCAAGGGGTA
CTGGCTACAGACAGGGTTGTGCCTCTTGGGTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig113885:230..1263-

>mRNA_H-elongata_contig113885.1105.1 ID=mRNA_H-elongata_contig113885.1105.1|Name=mRNA_H-elongata_contig113885.1105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig113885:230..1263- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTTGCACAGAGCGAGGGCTCCACCTCTCAGGCAAACGCGTGCTT
GGTGAAGGTGGCGGCCATGGTATCTAAGATGGTTTTTGCACAGAGCGAGG
GCTCCACCTCTCAGGCAAACGCGTGCTTGGTGAAGGTGGCGGCCATGGTA
TCTAAGGACATGAACCCTCCTCAGCTCGGTCGTGCGGCGGTGATCTACGA
AAAGCTTGGGAGATCTTGCTTGGAAAAGAAGCTGCTGCAGATGAACGCCA
AGGGGTACTGGCTACAGACAGGGTTGTGCCTCTTGGGTAAGGACATGAAC
CCTCCTCAGCTCGGTCGTGCGGCGGTGATCTACGAAAAGCTTGGGAGATC
TTGCTTGGAAAAGAAGCTGCTGCAGATGAACGCCAAGGGGTACTGGCTAC
AGACAGGGTTGTGCCTCTTGGGTAAG
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