mRNA_H-elongata_contig11374.1097.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11374.1097.1
Unique NamemRNA_H-elongata_contig11374.1097.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11374.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11374contigH-elongata_contig11374:204..587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size385
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.7149353-CDS-H-elongata_contig11374:203..5871622929655.7149353-CDS-H-elongata_contig11374:203..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11374 204..587 +
1691679107.8388956-CDS-H-elongata_contig11374:203..5871691679107.8388956-CDS-H-elongata_contig11374:203..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11374 204..587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11374.1097.1prot_H-elongata_contig11374.1097.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11374 204..587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11374.1097.1

>prot_H-elongata_contig11374.1097.1 ID=prot_H-elongata_contig11374.1097.1|Name=mRNA_H-elongata_contig11374.1097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
YFCTEIQYSRANNKFATLRHLTHRIKSCSSPPLVYWSYETALRWHGCRIP
LILGTRAVVLYLLVFCLLLPVMLSPANLHPAVLRCVFSCASRATSSPRRK
GCTYQTRRRRHRVRIWPPQPDGGQHLV*
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mRNA from alignment at H-elongata_contig11374:204..587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11374.1097.1 ID=mRNA_H-elongata_contig11374.1097.1|Name=mRNA_H-elongata_contig11374.1097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig11374:204..587+ (Himanthalia elongata Himel1 dioecious)
TACTTTTGTACAGAAATACAGTACTCGCGGGCGAATAACAAATTCGCGAC
TCTGCGGCACCTCACACACCGTATCAAAAGCTGCTCCTCACCACCTCTGG
TGTATTGGTCATATGAGACGGCACTGAGGTGGCACGGTTGTAGGATTCCC
TTGATCTTGGGAACGCGAGCAGTAGTCCTATATCTGCTTGTTTTCTGTCT
TCTGCTGCCTGTTATGCTTTCGCCCGCAAATTTACACCCTGCAGTACTAC
GCTGCGTGTTCAGTTGCGCGAGCAGAGCGACCTCATCTCCGAGACGAAAA
GGTTGTACCTATCAAACCCGTCGAAGAAGACATCGAGTCCGGATTTGGCC
GCCCCAACCTGACGGTGGCCAACACCTTGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11374:204..587+

>mRNA_H-elongata_contig11374.1097.1 ID=mRNA_H-elongata_contig11374.1097.1|Name=mRNA_H-elongata_contig11374.1097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig11374:204..587+ (Himanthalia elongata Himel1 dioecious)
TACTTTTGTACAGAAATACAGTACTCGCGGGCGAATAACAAATTCGCGAC
TCTGCGGCACCTCACACACCGTATCAAAAGCTGCTCCTCACCACCTCTGG
TGTATTGGTCATATGAGACGGCACTGAGGTGGCACGGTTGTAGGATTCCC
TTGATCTTGGGAACGCGAGCAGTAGTCCTATATCTGCTTGTTTTCTGTCT
TCTGCTGCCTGTTATGCTTTCGCCCGCAAATTTACACCCTGCAGTACTAC
GCTGCGTGTTCAGTTGCGCGAGCAGAGCGACCTCATCTCCGAGACGAAAA
GGTTGTACCTATCAAACCCGTCGAAGAAGACATCGAGTCCGGATTTGGCC
GCCCCAACCTGACGGTGGCCAACACCTTGTCTGATACTTTTGTACAGAAA
TACAGTACTCGCGGGCGAATAACAAATTCGCGACTCTGCGGCACCTCACA
CACCGTATCAAAAGCTGCTCCTCACCACCTCTGGTGTATTGGTCATATGA
GACGGCACTGAGGTGGCACGGTTGTAGGATTCCCTTGATCTTGGGAACGC
GAGCAGTAGTCCTATATCTGCTTGTTTTCTGTCTTCTGCTGCCTGTTATG
CTTTCGCCCGCAAATTTACACCCTGCAGTACTACGCTGCGTGTTCAGTTG
CGCGAGCAGAGCGACCTCATCTCCGAGACGAAAAGGTTGTACCTATCAAA
CCCGTCGAAGAAGACATCGAGTCCGGATTTGGCCGCCCCAACCTGACGGT
GGCCAACACCTTGTCTGA
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