mRNA_H-elongata_contig113696.1093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113696.1093.1
Unique NamemRNA_H-elongata_contig113696.1093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: D7FMN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN9_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.210e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQAE 198
            RARAVWIYTLLACLEKPLGSETAALVREILRRCC+QRAEVE+PLDDNLPALN+I AITGRFFQQAE
Sbjct:  243 RARAVWIYTLLACLEKPLGSETAALVREILRRCCSQRAEVESPLDDNLPALNIITAITGRFFQQAE 308
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A6H5K160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K160_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.220e-34
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQAE 198
            RARAVWIYTLLACLEKPLGSETAALVREILRRCC+QRAEVE+PLDDNLPALN+I AITGRFFQQAE
Sbjct:  331 RARAVWIYTLLACLEKPLGSETAALVREILRRCCSQRAEVESPLDDNLPALNIIAAITGRFFQQAE 396
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: M4C4K0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K0_HYAAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVW+Y L+A L+KP+ +  AA +R+ILRRC   R E+ETP +  L +LNV++ ITG FF Q
Sbjct:  190 RARAVWMYALMARLDKPVHAAVAATIRQILRRCWTLRCELETPSEVQLKSLNVLIVITGDFFGQ 253
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A662WVK0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVK0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-14
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R++LRRC   R E+E P +  L ALNV+V I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHAGVAATIRQLLRRCWTLRCELEAPSEQQLKALNVLVVIAGDFFGQ 254
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: H3GMA3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMA3_PHYRM)

HSP 1 Score: 73.2 bits (178), Expect = 6.020e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R E+E P +  L +LN+++ I+G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRCELEAPTEIQLKSLNILIVISGDFFGQ 254
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A225WKV8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKV8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.100e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R++LRRC A R E+ET     L ALN+++ +TG FF Q
Sbjct:  192 RARAVWIYALLARLDKPVHASVAATIRQLLRRCWALRCELETLSQIQLKALNILIVVTGDFFGQ 255
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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: G4YNM5_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YNM5_PHYSP)

HSP 1 Score: 72.8 bits (177), Expect = 8.510e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R+E+E P +  L +LN+++ I G FF Q
Sbjct:  192 RARAVWIYALLARLDKPVHANVAATIRQILRRCWTLRSELEAPSEVQLKSLNILIVIAGDFFGQ 255
[Close]
BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: W2QYQ9_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2QYQ9_PHYPN)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R+E+E P +  L +LN+++ I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAPPEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: D0MWF2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MWF2_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-13
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R E+E P +  L +LN+++ I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRCELEKPSEMQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: E3TF03_ICTPU (Gem-associated protein 2 n=6 Tax=Siluroidei TaxID=1489793 RepID=E3TF03_ICTPU)

HSP 1 Score: 71.6 bits (174), Expect = 2.210e-13
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   16 WIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            W+Y LLACLEKPL  E  +L+R++ RRC A RA +E   D+ LPALN+++ I  R+F+Q
Sbjct:  191 WLYALLACLEKPLLPEAHSLIRQLARRCSAVRAHLENKDDERLPALNLMICIVARYFEQ 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMN9_ECTSI6.210e-3593.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K160_9PHAE3.220e-3493.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M4C4K0_HYAAE2.180e-1454.69Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662WVK0_9STRA3.090e-1456.25Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3GMA3_PHYRM6.020e-1453.13Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225WKV8_9STRA6.100e-1454.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4YNM5_PHYSP8.510e-1453.13Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
W2QYQ9_PHYPN1.170e-1353.13Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
D0MWF2_PHYIT1.640e-1353.13Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
E3TF03_ICTPU2.210e-1352.54Gem-associated protein 2 n=6 Tax=Siluroidei TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113696contigH-elongata_contig113696:328..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog272952.HpaP814018
Preferred nameGEMIN2
KEGG koko:K13130
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0007275,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0008380,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0022607,GO:0022613,GO:0022618,GO:0030534,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032797,GO:0032991,GO:0034622,GO:0034641,GO:0034718,GO:0034719,GO:0034730,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046907,GO:0048856,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071254,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097504,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.Survival motor neuron (SMN) interacting protein 1 (SIP1)
EggNOG OGs28H7D@1,2QPK4@2759,3Q7JH@4776
Ec32 ortholog descriptionGem-associated protein 2
Ec32 orthologEc-23_001020.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categorysignal peptide
Exons3
Model size210
Cds size210
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113696.1093.1prot_H-elongata_contig113696.1093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113696 328..1142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.4857256-CDS-H-elongata_contig113696:327..3881622929655.4857256-CDS-H-elongata_contig113696:327..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 328..388 +
1691679107.7354012-CDS-H-elongata_contig113696:327..3881691679107.7354012-CDS-H-elongata_contig113696:327..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 328..388 +
1622929655.5007756-CDS-H-elongata_contig113696:736..7951622929655.5007756-CDS-H-elongata_contig113696:736..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 737..795 +
1691679107.7543073-CDS-H-elongata_contig113696:736..7951691679107.7543073-CDS-H-elongata_contig113696:736..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 737..795 +
1622929655.521627-CDS-H-elongata_contig113696:1052..11421622929655.521627-CDS-H-elongata_contig113696:1052..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 1053..1142 +
1691679107.7674093-CDS-H-elongata_contig113696:1052..11421691679107.7674093-CDS-H-elongata_contig113696:1052..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113696 1053..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113696.1093.1

>prot_H-elongata_contig113696.1093.1 ID=prot_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPA
LNVIVAITGRFFQQAEAVY*
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mRNA from alignment at H-elongata_contig113696:328..1142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113696.1093.1 ID=mRNA_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=815bp|location=Sequence derived from alignment at H-elongata_contig113696:328..1142+ (Himanthalia elongata Himel1 dioecious)
AGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGCCTCGAGAAGCC
GTTGGGAAGCGGTGAGCGGTCGATCCCAAGTTTCCATTGAATTGGTTGAC
CCGTGACACTCGGCGAATGTATGTGTGGGGGAGAGAGTAACGACGGTTCT
GCTCGGGCGAAAGCAATCGTAGAAGAGGTCACGAGGCGTATATATCAAGC
TTCAAACTATTCTCGAACGGAAAAGGTCGTGTTTCCTGTCGAGATGTTTT
GCGCGCCTCGTGGCCTCCTCAGGACCGCAAACACGCACGTTTGAAGATCT
TATGTGTGTACCGCGCGTCCCCCTTCCCTACTCCTTGAGTCTTGCGCTAT
ATTTCGTTGATGGCGACCTCCGGTTATTGTCAACTGATGTGAAACGTTTC
CCCGCGTAGAGACGGCGGCCTTGGTGAGGGAGATTCTCCGGAGATGCTGT
GCACAGAGGGCGGAAGTGGTAAGCCCGGTAGCTATAGACGTACGCGAGAC
GCGATGGTTTCCGTATCAGGCGTAGCTAGGAAGTCGACCATCCGCCGCCG
AGATGAGGCTTGTGTCTTATCTGGGCAATCCGCGCTCACCTTGCAAGCAT
AAGCATTGACGCTATCGTGTGGTACCTGATTGATCACACCCCTGCTGCAC
GGTAGCGGTACCTTTGTCCAACTCAATTTTTCTCCCCTTGACAAGCTCCA
GTTGCTCGGCGTGTGTACGGTACAGGAGACGCCGCTTGATGACAACCTGC
CGGCTCTCAACGTGATCGTCGCAATAACCGGAAGATTCTTCCAGCAAGCC
GAGGCGGTGTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig113696:328..1142+

>mRNA_H-elongata_contig113696.1093.1 ID=mRNA_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig113696:328..1142+ (Himanthalia elongata Himel1 dioecious)
AGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGCCTCGAGAAGCC
GTTGGGAAGCGAGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGC
CTCGAGAAGCCGTTGGGAAGCGAGACGGCGGCCTTGGTGAGGGAGATTCT
CCGGAGATGCTGTGCACAGAGGGCGGAAGTGAGACGGCGGCCTTGGTGAG
GGAGATTCTCCGGAGATGCTGTGCACAGAGGGCGGAAGTGGAGACGCCGC
TTGATGACAACCTGCCGGCTCTCAACGTGATCGTCGCAATAACCGGAAGA
TTCTTCCAGCAAGCCGAGGCGGTGTACTGAGAGACGCCGCTTGATGACAA
CCTGCCGGCTCTCAACGTGATCGTCGCAATAACCGGAAGATTCTTCCAGC
AAGCCGAGGCGGTGTACTGA
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