mRNA_H-elongata_contig113675.1092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113675.1092.1
Unique NamemRNA_H-elongata_contig113675.1092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: D7FL06_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL06_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.890e-49
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 1
Query:    1 QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIFSDRNP 285
            +ES  YYGTGESFV+SFHP+FK H WTGANDYF IS++SWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVW FS+  P
Sbjct:  673 KESQKYYGTGESFVYSFHPSFKGHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWFFSNLKP 767          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: W7U6I5_9STRA (Oxidation resistance protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6I5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.880e-35
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIFSD 276
            Q +  YYGTGESFVF FHP F ++ WTG NDYF++SN   LAMGGGGG FAFQ+DDELD G S PSDT+G+ RLSS   F+CL +EVW F D
Sbjct:  189 QNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVFKCLSIEVWGFGD 279          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A4D9DA04_9STRA (TLDc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA04_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.890e-33
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIFSD 276
            Q +  YYGTGESFVF FHP F ++ WTG NDYF++SN   LAMGGGGG FAFQ+DDELD G S PSDT+G+ RLSS   F+CL +EVW F D
Sbjct:  456 QNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVFKCLSIEVWGFGD 546          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A482RX24_9ARCH (TLDc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX24_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 7.340e-30
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWI 267
            Q+   YYG+GESFVFS  PT + + WT  N++FV+S+   LAMGGGG GFA QIDDELD G SN SDT+ +P LSSNEFF+CL VEVW+
Sbjct:  465 QDKKSYYGSGESFVFSVIPTIQAYKWTQKNNFFVLSHTEGLAMGGGGEGFAIQIDDELDTGVSNHSDTYDNPTLSSNEFFKCLNVEVWV 553          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A7S3LZX6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZX6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.190e-29
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIFS 273
            Q    YYG GESFVFS  PT +VH WTG N+ FV+SN    AMGGGG G+A Q+DDELD G SN SDTF +  LSS+EFF+CL VEVW+ +
Sbjct:  262 QNKQGYYGNGESFVFSVVPTPRVHKWTGKNELFVLSNPHCFAMGGGGEGYAIQLDDELDTGVSNKSDTFNNNVLSSSEFFKCLNVEVWMLN 352          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A5B7JVI5_PORTR (TLD domain-containing protein 2 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7JVI5_PORTR)

HSP 1 Score: 88.2 bits (217), Expect = 1.880e-20
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   16 YYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIF 270
            YYGTGESF+FSF P F+V SWTG N +FV  N   L +GGG G F   +D +L  G + P  TF +P+L+ +E F    VE W F
Sbjct:   43 YYGTGESFLFSFQPEFQVFSWTGENTFFVKGNNESLIVGGGDGNFGLWLDGDLYQGRTQPCKTFNNPQLTDSEDFIIKAVECWCF 127          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: UPI000854A45B (LOW QUALITY PROTEIN: nuclear receptor coactivator 7 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A45B)

HSP 1 Score: 89.7 bits (221), Expect = 4.330e-20
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   16 YYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIF 270
            YYGTGE+F+F+F P FK   W+G N YF+  + + LA+GGGGGGF   +D +L  G SNP  TF +  LS  E F    +EVW F
Sbjct:  137 YYGTGETFLFTFSPDFKAFKWSGDNSYFINGDIASLALGGGGGGFGLWLDSDLYHGRSNPCSTFNNNVLSKKEDFIVQDIEVWTF 221          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: UPI0018A74086 (TLD domain-containing protein 2-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI0018A74086)

HSP 1 Score: 87.4 bits (215), Expect = 2.150e-19
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   16 YYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIF 270
            +YGTGESF+FSFHP F V  WTG N++FV  N   L +GGG G F   +D +L  G + P  TF +P+L+  E F    VE W F
Sbjct:  115 FYGTGESFLFSFHPEFHVFPWTGENNFFVKGNNESLVVGGGDGNFGLWLDGDLYQGRTQPCKTFDNPQLTDTEDFIIKTVECWCF 199          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A0P4WCB2_SCYOL (TLDc domain-containing protein n=2 Tax=Pleocyemata TaxID=6692 RepID=A0A0P4WCB2_SCYOL)

HSP 1 Score: 87.0 bits (214), Expect = 2.600e-19
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   16 YYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIF 270
            YYGTGESF+F+F P F+V SWTG N +FV  N   L +GGG G F   +D +L  G + P  TF +P+L+ +E F    VE W F
Sbjct:  108 YYGTGESFLFTFQPEFQVFSWTGENTFFVKGNNESLIVGGGDGNFGLWLDGDLYQGRTQPCKTFNNPQLTDSEDFIIKAVECWCF 192          
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Match: A0A0L0T6E0_ALLM3 (TLDc domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T6E0_ALLM3)

HSP 1 Score: 88.6 bits (218), Expect = 3.490e-19
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 YYGTGESFVFSFHPT---FKVHSWTGANDYFVISNESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVW 264
            +YGTGESFVF F  T    K + WTG ND+F++   S+ A+G G G FA  +D  L+ G+SNP++TF +P L+S+  F CL  EVW
Sbjct:  194 FYGTGESFVFEFDHTSKELKAYHWTGLNDFFLLGEPSYFAVGAGDGKFAIYLDSNLEHGKSNPTETFDNPVLASDTTFFCLDCEVW 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113675.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL06_ECTSI1.890e-4985.26TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
W7U6I5_9STRA4.880e-3565.22Oxidation resistance protein 1 n=1 Tax=Nannochloro... [more]
A0A4D9DA04_9STRA2.890e-3365.22TLDc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A482RX24_9ARCH7.340e-3062.92TLDc domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S3LZX6_9STRA1.190e-2961.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5B7JVI5_PORTR1.880e-2049.41TLD domain-containing protein 2 n=1 Tax=Portunus t... [more]
UPI000854A45B4.330e-2049.41LOW QUALITY PROTEIN: nuclear receptor coactivator ... [more]
UPI0018A740862.150e-1948.24TLD domain-containing protein 2-like n=2 Tax=Penae... [more]
A0A0P4WCB2_SCYOL2.600e-1948.24TLDc domain-containing protein n=2 Tax=Pleocyemata... [more]
A0A0L0T6E0_ALLM33.490e-1948.84TLDc domain-containing protein n=1 Tax=Allomyces m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113675contigH-elongata_contig113675:1291..1983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.4e-42
Seed eggNOG ortholog2880.D7FL06
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.4256794-CDS-H-elongata_contig113675:1290..13361622929655.4256794-CDS-H-elongata_contig113675:1290..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113675 1291..1336 -
1691679107.7051463-CDS-H-elongata_contig113675:1290..13361691679107.7051463-CDS-H-elongata_contig113675:1290..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113675 1291..1336 -
1622929655.438459-CDS-H-elongata_contig113675:1741..19831622929655.438459-CDS-H-elongata_contig113675:1741..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113675 1742..1983 -
1691679107.7158625-CDS-H-elongata_contig113675:1741..19831691679107.7158625-CDS-H-elongata_contig113675:1741..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113675 1742..1983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113675.1092.1prot_H-elongata_contig113675.1092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113675 1291..1983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113675.1092.1

>prot_H-elongata_contig113675.1092.1 ID=prot_H-elongata_contig113675.1092.1|Name=mRNA_H-elongata_contig113675.1092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QESHDYYGTGESFVFSFHPTFKVHSWTGANDYFVISNESWLAMGGGGGGF
AFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWIFSDRNP*
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mRNA from alignment at H-elongata_contig113675:1291..1983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113675.1092.1 ID=mRNA_H-elongata_contig113675.1092.1|Name=mRNA_H-elongata_contig113675.1092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig113675:1291..1983- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGCCACGACTACTACGGAACGGGCGAGTCGTTCGTCTTCTCCTT TCACCCGACCTTTAAGGTCCACAGCTGGACAGGCGCCAACGACTATTTCG TGATCTCAAACGAGTCTTGGTTGGCGATGGGCGGCGGCGGCGGGGGCTTC GCCTTTCAGATCGACGATGAGCTCGACGCCGGGGAAAGCAACCCCAGCGA TACCTTCGGCAGCCCTCGCCTCTCGTCCAACGAGTTTTTCAGGTAGGGTT TGGCGTTATTGTGTAGGAGGGAAGCGGATAGAGAATGTACATATCTTGGG AGGGGAGAGTTGGAGGTACAAGTAGCGTTGCTCGCAGTTCGGTAACCTTG TCCTCATTTTCCCCCAACCAGCCCTCTGGCCTCGATCTCGATCTCGATCG ATGTTGAGTTCCTTTATTAAGACACAAAGGAAAAGCGCCGTTCCTGTGGA ATGCATGGCCGGAATGTGCCCTCCGTCCCTGATGAGTTTTACTATTTTCT GATATCCGTCTCTCGCCGTTCCTATGGAATGCATGGGCGGAATGTGCCCT GCGTTGCCCTCCGTGCTTGACGAGTTTTACTATTTTCTTATATCCGACCC CTGTCCTCTATCCGTCCCCCGCCTTCTCCATCTCCTGATCAACTCAGATG TCTTCAGGTGGAGGTATGGATCTTCTCGGACAGGAATCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig113675:1291..1983-

>mRNA_H-elongata_contig113675.1092.1 ID=mRNA_H-elongata_contig113675.1092.1|Name=mRNA_H-elongata_contig113675.1092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig113675:1291..1983- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGCCACGACTACTACGGAACGGGCGAGTCGTTCGTCTTCTCCTT
TCACCCGACCTTTAAGGTCCACAGCTGGACAGGCGCCAACGACTATTTCG
TGATCTCAAACGAGTCTTGGTTGGCGATGGGCGGCGGCGGCGGGGGCTTC
GCCTTTCAGATCGACGATGAGCTCGACGCCGGGGAAAGCAACCCCAGCGA
TACCTTCGGCAGCCCTCGCCTCTCGTCCAACGAGTTTTTCAGCAGGAGAG
CCACGACTACTACGGAACGGGCGAGTCGTTCGTCTTCTCCTTTCACCCGA
CCTTTAAGGTCCACAGCTGGACAGGCGCCAACGACTATTTCGTGATCTCA
AACGAGTCTTGGTTGGCGATGGGCGGCGGCGGCGGGGGCTTCGCCTTTCA
GATCGACGATGAGCTCGACGCCGGGGAAAGCAACCCCAGCGATACCTTCG
GCAGCCCTCGCCTCTCGTCCAACGAGTTTTTCAGATGTCTTCAGGTGGAG
GTATGGATCTTCTCGGACAGGAATCCTTGAATGTCTTCAGGTGGAGGTAT
GGATCTTCTCGGACAGGAATCCTTGA
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