mRNA_H-elongata_contig11367.1091.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI) HSP 1 Score: 232 bits (592), Expect = 2.680e-72 Identity = 113/161 (70.19%), Postives = 131/161 (81.37%), Query Frame = 1
Query: 1 RSATPPWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGAPFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
R+ PPWYR S+ +GFPLRTLHNEILDLCDLLMPTPEEKA+TAIAITY+KRVV ETLG A+V IFGSQLTGLVLP+SD+D+VV G P S+ +LG AM+RR + EV +V VI ARVP+VKFVH +GV VDVCFDQ SG+KSG AAR +MRQM VR
Sbjct: 244 RNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPEEKAKTAIAITYIKRVVEETLGSEARVEIFGSQLTGLVLPSSDIDSVVLGGPRGSLGSLGAAMYRRQNKGEVREVTVIKSARVPLVKFVHVGSGVQVDVCFDQESGMKSGRAARAMMRQMQPVR 404
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE) HSP 1 Score: 233 bits (593), Expect = 3.690e-71 Identity = 113/161 (70.19%), Postives = 133/161 (82.61%), Query Frame = 1
Query: 1 RSATPPWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGAPFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
R+ PPWYR S+ +GFPLRTLHNEILDLCDLLMPTPEEKA+TAIAITY+KRVV+E LG AKV IFGSQLTGLVLP+SD+D+VV G P ++I +LG AM+RR + EV +V VI KARVP+VKFVH +GV VDVCFDQ SG++SG AAR +MRQM VR
Sbjct: 165 RNIRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPEEKAKTAIAITYIKRVVKENLGSEAKVEIFGSQLTGLVLPSSDIDSVVLGGPRSAIGSLGAAMYRRQNKGEVREVTVIKKARVPLVKFVHVGSGVQVDVCFDQESGMQSGRAARAMMRQMQPVR 325
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A835YW64_9STRA (PAP-associated domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW64_9STRA) HSP 1 Score: 132 bits (332), Expect = 9.250e-34 Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 1
Query: 13 PPWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGAPFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTG----VHVDVCFDQSSGLKSGAAARVLMRQ 468
PPW+R E L TLHNEILD CDL+ PT E A+ +V +V + LG VH+FGS LT L++P+SD+D V+ AP N+I L R + RRS E+ + VI KA+VPI+KFV+ G ++ D+CF+Q+SG+ +G L+ +
Sbjct: 37 PPWFRHEHWCPENVLVTLHNEILDFCDLVKPTKAEHEDAERALNFVTQVAEQVLGNGVAVHVFGSHLTKLLVPSSDLDLVIMNAPSNAIHLLSRDLRRRSNTGEIESLEVIGKAKVPIIKFVYVPPGGTAKLNCDICFNQTSGINTGRQTVALLSE 192
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A6J0PK18_ELAGV (inactive non-canonical poly(A) RNA polymerase protein Trf4-2 isoform X1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6J0PK18_ELAGV) HSP 1 Score: 110 bits (275), Expect = 2.700e-25 Identity = 64/165 (38.79%), Postives = 99/165 (60.00%), Query Frame = 1
Query: 1 RSATPPWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGA----PFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
R+ W+R+ S + P+ LH EILD CD + PTPEE+A A A+ V +++ + ++KV +FGS TGL LP SD+D V+ + P + L RA+ +RS +++ VIAKARVPIVKFV ++G++ D+ FD G K+ + +++MP +R
Sbjct: 82 RALEQAWFRAGSRFKS-PMLQLHKEILDFCDFVSPTPEERASRAAAVQCVFEIIKH-IWPHSKVEVFGSFRTGLYLPTSDIDVVILESKVKTPQMGLYALARALSQRSIVKKMQ---VIAKARVPIVKFVEKRSGIYFDISFDVDGGPKAADFIKDALKKMPPLR 241
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A7J7I6L8_CAMSI (Uncharacterized protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7I6L8_CAMSI) HSP 1 Score: 110 bits (275), Expect = 3.080e-25 Identity = 67/159 (42.14%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 19 WYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGA----PFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
W+R+ + P+ LH EILD C+ L PTPEE+A A+ V VVR + N+KV +FGS TGL LP SD+D V+ G+ P +Q L RA+ +R +++ VIAKARVPIVKFV ++GV D+ FD +G K+ + + +MP +R
Sbjct: 100 WFRANCRFKS-PMLQLHKEILDFCEFLSPTPEEQASRNAAVECVFDVVRY-IWPNSKVEVFGSFKTGLYLPTSDIDVVILGSDIKTPQIGLQALARALSQRGIAKKIQ---VIAKARVPIVKFVEKRSGVAFDISFDLQNGPKAAEFIKNAVSKMPPLR 253
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A7S4DIS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIS6_HETAK) HSP 1 Score: 108 bits (270), Expect = 5.510e-25 Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 1
Query: 16 PWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGAPFN-SIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
PW+R ES+ PL +LHNEILD CDL++P+PEE+ I K V+ E L +A+V +FGS+LT L LP SD+D ++L R + + + VI AR+PIVK H ++ VHVD+ F+Q SGL +GA + MR+ P VR
Sbjct: 76 PWFRPESLNHS-PLVSLHNEILDFCDLIVPSPEEQELRNRTIEDCKAVILE-LFPDAEVVVFGSELTQLALPTSDIDLAALNVQEEPKKRHLHRVGAAFKGKGIIDYLEVIDSARIPIVKLRHKESQVHVDISFNQPSGLATGACVQRFMRKFPPVR 230
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A5B6YGP9_DAVIN (Putative non-canonical poly(A) RNA polymerase PAPD5 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YGP9_DAVIN) HSP 1 Score: 109 bits (273), Expect = 5.750e-25 Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = 1
Query: 19 WYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGA----PFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
W+R+ + P+ LH EILD CD L PTPEE+A A+ V V+R + N KV +FGS TGL LP SD+D V+ G+ P +Q L RA+ +R +++ VIAKARVPI+KFV ++GV D+ FD +G K+ + + + P +R
Sbjct: 106 WFRANCRFKS-PMLQLHKEILDFCDFLSPTPEEQASRNTAVESVFNVIRY-IWPNCKVEVFGSFKTGLYLPTSDIDVVIMGSDIKTPQIGLQALSRALSQRGIAKKIQ---VIAKARVPIIKFVEKRSGVAFDISFDVENGPKAAEFIKDAISEWPPLR 259
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: W9RD67_9ROSA (PAP-associated domain-containing protein 5 n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RD67_9ROSA) HSP 1 Score: 109 bits (272), Expect = 7.070e-25 Identity = 66/159 (41.51%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 19 WYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGA----PFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
W+R S + P+ LH EI+D C+ L PTPEE+ AI V V++ + N KV +FGS TGL LP+SD+D V+ GA P +Q L RA+ +RS +++ VIAKARVPI+KFV K+GV D+ FD +G + + ++ +MP +R
Sbjct: 98 WFRGNSKFKS-PMLQLHKEIVDFCEFLSPTPEEQDARNAAIERVFDVIKY-IWPNCKVEVFGSFKTGLYLPSSDIDVVILGAGIPNPQQGLQALSRALSQRSLVKKMQ---VIAKARVPIIKFVEKKSGVAFDISFDVQNGPVAAEFIKDVVSKMPPLR 251
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: UPI001CFB5C06 (terminal nucleotidyltransferase 4B n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB5C06) HSP 1 Score: 108 bits (271), Expect = 1.050e-24 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 19 WYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGA----PFNSIQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
W++ S + P+ LH EI+D CD L PTPEE+A A+ V V++ + N K +FGS TGL LP SD+D V+ G+ P +Q L RA+ S+Q + VIAKARVPI+KFV K+GV D+ FD +G K+ + + + PQ+R
Sbjct: 102 WFKGNSRFKS-PMLQLHKEIVDFCDFLSPTPEEQALRNAAVESVFDVIKY-IWPNCKPEVFGSFRTGLYLPTSDIDVVILGSGIKNPPTGLQALSRAL---SQQGIAKKIQVIAKARVPIIKFVEKKSGVSFDISFDAQNGPKAAEFIKDALSKWPQLR 255
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Match: A0A6I9TES8_SESIN (non-canonical poly(A) RNA polymerase PAPD5 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TES8_SESIN) HSP 1 Score: 108 bits (270), Expect = 1.270e-24 Identity = 65/159 (40.88%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 19 WYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVKRVVRETLGGNAKVHIFGSQLTGLVLPNSDVDTVVAGAPFNS----IQNLGRAMFRRSRQEEVHDVVVIAKARVPIVKFVHAKTGVHVDVCFDQSSGLKSGAAARVLMRQMPQVR 483
W+R+ + P+ LH EILD CD L PTPEE+ AI V V++ + NA+V +FGS TGL LP+SD+D V+ G+ S +Q L RA+ +R +++ VIAKARVPI+KFV K+GV D+ FD ++G K+ + + + P +R
Sbjct: 95 WFRANCRFKS-PMLQLHKEILDFCDFLSPTPEEQESRNAAIESVFNVIKY-IWPNAEVEVFGSFKTGLYLPSSDIDVVILGSNVRSPQIGLQALSRALSQRGIAKKIQ---VIAKARVPIIKFVEKKSGVAFDISFDVNNGPKAAEFIKDAVSKWPPLR 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11367.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11367.1091.1 >prot_H-elongata_contig11367.1091.1 ID=prot_H-elongata_contig11367.1091.1|Name=mRNA_H-elongata_contig11367.1091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp RSATPPWYRSESIARGFPLRTLHNEILDLCDLLMPTPEEKARTAIAITYVback to top mRNA from alignment at H-elongata_contig11367:213..2693- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11367.1091.1 ID=mRNA_H-elongata_contig11367.1091.1|Name=mRNA_H-elongata_contig11367.1091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2481bp|location=Sequence derived from alignment at H-elongata_contig11367:213..2693- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11367:213..2693- >mRNA_H-elongata_contig11367.1091.1 ID=mRNA_H-elongata_contig11367.1091.1|Name=mRNA_H-elongata_contig11367.1091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig11367:213..2693- (Himanthalia elongata Himel1 dioecious)back to top |