mRNA_H-elongata_contig11352.1086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11352.1086.1
Unique NamemRNA_H-elongata_contig11352.1086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 4.430e-146
Identity = 213/272 (78.31%), Postives = 236/272 (86.76%), Query Frame = 1
Query:    1 MKSAVMAFACASCASAFMAPPLVTNARVSTPKTATMMSEGPGSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWAT 816
            MKSAVMA AC S ASAF+AP LV++   S+    TMM+E PGSWW PSDG+KS ALPWA KPLIGDG +VGDAGFDPLNLANGPADLVWLRTAELKHGRICMLA VG+VAPELVQHPVG+ GF+F  EFTQMNAFAALSSVPRLGLAQIVIL SL+EVASFT N   +Y YEDDLT LE K K  G+T+ LAGAAK+APV  NK+Q+F+D VIPGDLGFDPLGLAANG+NPDYALAE+KH RLAM+GFLGMAVQQAVDPNGGVLEQF+NWA+
Sbjct:    1 MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.940e-80
Identity = 134/238 (56.30%), Postives = 167/238 (70.17%), Query Frame = 1
Query:  124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAP--------VETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
            G+W+   D + ST+LPW  KP+IGDG ++GD GFDPL+L+    D+ WLR AELKHGR+CMLA+VGLV PELVQHPVG++GF FPAEFTQMNA AAL +VP+ GLAQIV+   L+E+A+F SN+ + + YED L+ LER          L G AK           +E   E+   D+   GDLGFDPLGLAANGV  DYALAEIKH RLAM+G LGM + Q  +P+ GVL+Q L+WA
Sbjct:   58 GAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNA--GDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWA 292          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.130e-73
Identity = 127/238 (53.36%), Postives = 164/238 (68.91%), Query Frame = 1
Query:  124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAK------VAPVETNKEQLFKDD--VIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
            G W+   D + STALPW  +P IGDG++VGD GFDP  L+    D+ WLR AELKHGR+ MLA++G+V PELVQ P G+EGF+F  EF+++NA  ALS+VP LGLAQI++ IS VEVA+F+  +   + +ED+LT LERK  V GR   L+GAAK      V P     +  F+D    +PGDLGFDP+G   NG+NPDYALAEIKH RLAM+G  GM +Q+ + P G +L Q + WA
Sbjct:   62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA)

HSP 1 Score: 234 bits (596), Expect = 9.190e-70
Identity = 123/231 (53.25%), Postives = 154/231 (66.67%), Query Frame = 1
Query:  118 GPGSWWFP-SDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQL----FKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLE 795
            GP   W P +    S ALPW+ KP+IGDG + GD GFDP  L+     L WLR AE+KHGR+CMLA+VGL+APELVQ+PVGYEG QF   F +MNAF AL +VP LGLAQIV++  LVE+ S  SN+   + ++D LTS+ER    +G  + L G AK A     K +       + V PGDLGFDPLG A +G+ P++A AEIKH RLAM+G LGM +QQA  P  G+LE
Sbjct:   53 GPDGQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.630e-68
Identity = 123/228 (53.95%), Postives = 157/228 (68.86%), Query Frame = 1
Query:  133 WFPS--DGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFK-----DDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLE 795
            W P   DG  S ALPW+ KP+IGDGT+ GD GFDP NL++    L WLR AELKHGR+CMLA+VGLVAPEL QHP+G+EG +F  EFT+MNAF AL++ P LGLAQI++   LVE+ +F   +   + Y+D LT +E++    G  + L G AK A V  +    F      D+   GD+GFDPLG A NGVNPDYALAE+KH R+AM+G LGM +QQ+  P+ G+LE
Sbjct:   58 WLPKPVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNA-VAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC)

HSP 1 Score: 214 bits (546), Expect = 3.010e-62
Identity = 115/241 (47.72%), Postives = 157/241 (65.15%), Query Frame = 1
Query:  124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYED-------DLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFK--DDV--IPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
            G W+   D + S ALPW ++P IGDG +VGD GFDP  L+    ++ WLR AELKHGR+CMLASVGL+APELVQ P G++G  F   F++++ + AL+++P  G+AQI+I I+L+E+ +      A+Y Y         DLT  ER    TG T  LAG A        +E++ +  D V  +PGDLG+DPLGLA NG+  D+ALAEIKH RLAM+G LGM +Q  ++PN  +L+Q + WA
Sbjct:   62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELTT------AKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC)

HSP 1 Score: 203 bits (517), Expect = 3.070e-58
Identity = 111/225 (49.33%), Postives = 149/225 (66.22%), Query Frame = 1
Query:  157 STALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKV---TGRTEALAGAAKVAPVETNKEQLFKDDV----IPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNW 810
            S ALPW AKP IGDGT+VGD GFDPL L+   AD+ +LR AELKHGR+CMLA+VGL+APELVQ P G++G +F   F++MN F AL ++P  GL QI+I I+L+E+   T+ F+ +   +  +T +  K ++   TG T  LAG+A+        E + +       +PGDLGFDPLGLA  G+  D+ALAEIKH RLAM+  LGM +Q    P+ G+LE   +W
Sbjct:   53 SLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN--TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE)

HSP 1 Score: 158 bits (399), Expect = 7.280e-41
Identity = 91/230 (39.57%), Postives = 122/230 (53.04%), Query Frame = 1
Query:  124 GSWWFPSDGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
            G+W+   D   S + PW  K  I DGT+ GD GFDPL L+    D  W+RTAELKHGRI MLA VGL+ PEL+  P G++G  F   F  +    AL   P LG+ QI ++++L+E  +         +Y  +     + Y   G             ++ + E   K    PG +GFDP G A NG+  D+A AEIKH RLAMVG  GM +Q  + P+  +LEQ   WA
Sbjct:   84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQTL--------KYVKNPMEYLQPYMDKG-------------IKFSDEYFEKR--TPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWA 289          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT)

HSP 1 Score: 137 bits (346), Expect = 6.680e-34
Identity = 92/225 (40.89%), Postives = 123/225 (54.67%), Query Frame = 1
Query:  157 STALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFA-------ALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNW 810
            S ++P+A KP   DGT++GD GFDPL L+N   D+ WLR AE+KHGR+ MLA+ G     LVQ     EG++ P   +    FA       ALS+ P LGLAQIV LI L+E+ + +S  + +  YED           +   +A AG+                   PGDLG+DPLGL+A G+N DYA+AE+KH RLAM+G  GM     V     + EQ  +W
Sbjct:   48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGF----LVQ-----EGYRLPGPASNPELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYED-----------SPNLKAPAGSGS-----------------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLAGSLVSGKS-ISEQTYDW 233          
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Match: A0A0G4GWW0_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4GWW0_VITBC)

HSP 1 Score: 125 bits (313), Expect = 2.490e-29
Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 1
Query:  145 DGSKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIVILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPVETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLGMAVQQAVDPNGGVLEQFLNWA 813
            D  KS ALP+A KP   +G +VGD GFDP    N   DL  +R  ELKHGR+CMLA++G+    LVQ       +++   F   N   A  + P LG+ Q++++IS +E   +  NFV                   GR                         IPGD GFDPL L+  G+  ++ L E+KH RLAM+GFLGM VQQ + P+  ++E  +NWA
Sbjct:   46 DIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQ-DLARMREVELKHGRVCMLATLGV----LVQST-----YRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIEY--YNGNFV-------------------GR-------------------------IPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11352.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU7_ECTSI4.430e-14678.31Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z6C4_9STRA1.940e-8056.30Light harvesting complex protein n=2 Tax=Tribonema... [more]
W7TZB5_9STRA1.130e-7353.36Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U4N3_9STRA9.190e-7053.25Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XTT1_9STRA1.630e-6853.95Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A0G4G8I9_VITBC3.010e-6247.72Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FH94_VITBC3.070e-5849.33Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HNT2_9ALVE7.280e-4139.57Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J6CE65_DIALT6.680e-3440.89Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4GWW0_VITBC2.490e-2936.77Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11352contigH-elongata_contig11352:2659..6786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D8LKC5
Preferred nameLHCA1
KEGG koko:K08907
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0019904,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs28MEX@1,2QTYF@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001730.1
Exons2
Model size1518
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11352.1086.1prot_H-elongata_contig11352.1086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11352 3358..6786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.7613564-UTR-H-elongata_contig11352:2658..33571622929654.7613564-UTR-H-elongata_contig11352:2658..3357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11352 2659..3357 -
1691679107.4705362-UTR-H-elongata_contig11352:2658..33571691679107.4705362-UTR-H-elongata_contig11352:2658..3357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11352 2659..3357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.7737932-CDS-H-elongata_contig11352:3357..40641622929654.7737932-CDS-H-elongata_contig11352:3357..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11352 3358..4064 -
1691679107.4835851-CDS-H-elongata_contig11352:3357..40641691679107.4835851-CDS-H-elongata_contig11352:3357..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11352 3358..4064 -
1622929654.7846963-CDS-H-elongata_contig11352:6674..67861622929654.7846963-CDS-H-elongata_contig11352:6674..6786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11352 6675..6786 -
1691679107.4916856-CDS-H-elongata_contig11352:6674..67861691679107.4916856-CDS-H-elongata_contig11352:6674..6786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11352 6675..6786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11352.1086.1

>prot_H-elongata_contig11352.1086.1 ID=prot_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
MKSAVMAFACASCASAFMAPPLVTNARVSTPKTATMMSEGPGSWWFPSDG
SKSTALPWAAKPLIGDGTIVGDAGFDPLNLANGPADLVWLRTAELKHGRI
CMLASVGLVAPELVQHPVGYEGFQFPAEFTQMNAFAALSSVPRLGLAQIV
ILISLVEVASFTSNFVAEYQYEDDLTSLERKYKVTGRTEALAGAAKVAPV
ETNKEQLFKDDVIPGDLGFDPLGLAANGVNPDYALAEIKHCRLAMVGFLG
MAVQQAVDPNGGVLEQFLNWAT*
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mRNA from alignment at H-elongata_contig11352:2659..6786-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11352.1086.1 ID=mRNA_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4128bp|location=Sequence derived from alignment at H-elongata_contig11352:2659..6786- (Himanthalia elongata Himel1 dioecious)
ATGAAGTCCGCTGTTATGGCTTTTGCATGTGCCTCTTGCGCATCTGCCTT CATGGCACCACCGCTCGTGACCAACGCTCGCGTGTCGACGCCCAAGACGG CCACCATGATGTGTGAGTTTCACAGCCCACCCAAGCCTGAGGTTTTATAG GGCGGTGCATGCACTCCAACATAAGTAACCTTTTCCTCTCGAAGTACAAT CCGCGCATGGTGACCTGTTCAAGGTTCCTTCGCCTATTTTGGAGCTAAAT GCTGAATCATGGGCCTAGAGTAAATTCCGTTCGTTTTGAAACAATTTTGT CCTCTGACTCAGCCCCGTGCTACTTCTGTTGTGCCTTTCTTTGATAACAT GAGTCTCGATATCAAAAATATAACGTCTGCGTAGGTAGCCAACTTGAGCA TTTCCCTGAGTTGGGCTTATATATGATGGTCTCAACTCAATGACTGCATT GTGCTGGGTTGCCTACCCCCCGAACTAATTTGCCACGTGGCTGCCGTGAA AGTCAGCCAGTGTCATCACAATCGAGATTCTTGTTTACTCTACGTGTGTT AATGCCCACGAGTAACCAATACTTAATTCTCCTTGAGCTGATTTCAGTTT CAACCGTTGAGCACTGTCTGTCTTGGCTTGGAGATCAACCCAATGGCTAA AATACTCTCATGCAAAAGCTCTGCTGACTCTCTGATGAGAGTTTTTAATG CGTTAGCCACAGCTACGGTAATAACTTTCTATTAAATTATGCTGCTCATC ACCTACCTGTACAGTATTGTGTGTGTGATGATCACGTACAGCAAGAGTAG TATGGATCAACCGGGTGTCGTTGCCGATCCTGCTCTTGGTCATCTGAACA AGGAAGATGGCGCCCCCTTACGTGTAATTCCGGTTCGCGGCTCTAATCCA AATCGATAAAAAGTGAAAATGAGTTTCCCTGTCCTCGTTCGCGCCTGAGA AATTGGTCTCGCGAGACACTGGTTCGGTCGTCCCGTCCTGCGTTAGCCCG CTCATTCTCACAACCCAGGCTGAATCTGGTTCGTACTCCCGGGATCCTCT AGATCCTCTTGTTTTCCGCGACGGTGTCCATCTCTACCGTATAATACATT TTGTGTTTTCCGTTCCCTCAATAATCCGTCTTGGCAGTAAGATTCGAAGA AAGTCTCGTACGAGTACTGAGTCCAAAGGAAGCTGTAAAAATGAAATTGA ACCTACGGCACCCGTTGCCTTAATTAATTAAATAGCGCGTTCATGAGAAA ATGTCGCCCACCGATCCATGGCGGTTAGAAGATGCAGGAGCAGTATTCCA AAACCACGGATCGGGCATAGTCACGATATCTTGTATAAGGTGATTAGACA CTCGAGGTTCACATGTACGCCGCTCATCTCCGCGTAGGATATATTGGTTC GACCTTCAACCCCCTCTCTTCCTCACGTCACTGTGAGCAGGGGGGGCGAA CGTGACCTTGTGAGCAGGGGTGCGAGTGGAGGCATGTGGTTTATCTTGCT TCGCAATGAAAAGTTGTGTCCTCAAGGAGCCAATGAATTTTTATTTTTAA AAACTTGAACTCATTAGAACATCCACGCTTTCCTAGCACCATGAGACTAA CGTGGACATCATTACTACCTTGGAGCAAAAGAAATGAATGTCACACGTGA TTAATCAAACCAGAGCCTAGGGGGGTGAATTGTGTGTGGTGGTTAGGAAG GGTCAGGCACAGCATTGTACGTATGTCTCAGTGAGGGAGAAAAAAGTTAC GAGGGTCACATTTTTACTACATTTAAGTACAAAATCGTCAGATGTGATTA CTCATTCATCATACAGTATGGGGACGCCAAACCAGATAAAGACATTGTTA CTGTTACTCTACTCGTAGAGACGTCTATTCGTTGTATTTTGTATTTTAAA CATATGAGCTCATTTCAATCCTCCGAATATCCGGGTTTGGGTGCAAACGA GCACGCCGTATCAGTTCCAAAGACAGTTGATTCGGTTATAATGGTAGTTT GTGTAGCCGCGGCATGGTAAAGTTGACTTTGCGTACGGTAGTCTTTAACT AGCGCCTGGACTATTTTTTTATTTATAAAAGACTTTGAGCTCATTCCAAC CCTCCGAACATCCACGCCTTCTTGGCACCATAAGAGGTGCAGTCCAGGGG CCCAACTATCGGGAAGTAGGAATAAGCANNNNNNNNNNGCAGAAGGCAAC CAAATCCGGTTGATCTTCTGCTAAATGTGTGACCAACAACAACAACAACA ACAGAGTAGACATATATATATATAAGACTTTGGGCTCATTCCTACTCTCC GAACATCCACGCCTTCTTGGCACCATAAGAGGTGCAGTCCAGGGGACCAA CTATCGGGAAGTAGGAATAAGCATAAAAATGGTAATAATAATGATGTTAA TGGTGTTACTAATAACTGTATTAAGGGCTTAAATGTAAAGTAAGGCTGCG TGATGCAGCAATACCCTATGCTCGTGATTATCGAACGACTGTTAATCATG TCGGGAGTTAGTTCTACCTAAGATGAGGCTAAAGTTATAATCGACGGTAA CGATGTTTGCAATCTTCTCGCCCGCCTCTGTTCGAATCCGTACCATCCCA CCATCGTTGTATCGTCCCCTTAATATACCTTAATATATATATATATAATT TTAACTTCACTATAACTTCCCGACCGGTTTCGTGTGATTTTATGCCGACG CCCCGCGGACTCACGAGATCAGCCGAGGGGCCTGGATCATGGTGGTTCCC TTCCGACGGTTCAAAATCCACTGCGCTTCCATGGGCAGCCAAGCCGCTTA TCGGCGACGGGACCATCGTCGGCGATGCTGGCTTCGACCCCCTCAACCTG GCTAATGGCCCGGCCGACCTTGTGTGGCTGCGGACTGCGGAACTCAAGCA TGGGCGAATCTGCATGCTCGCGTCGGTAGGCTTGGTTGCCCCCGAGCTCG TTCAGCACCCTGTCGGGTATGAGGGTTTCCAGTTCCCCGCCGAGTTCACC CAGATGAACGCGTTCGCGGCGCTTTCGTCGGTGCCCCGGCTCGGTCTCGC GCAGATCGTGATCTTAATCTCCCTCGTCGAAGTGGCCTCGTTCACGTCAA ACTTCGTCGCGGAGTACCAGTACGAGGATGACTTGACCAGCCTCGAGCGC AAATACAAGGTGACGGGCAGGACGGAAGCTCTTGCGGGTGCGGCCAAGGT AGCTCCGGTCGAGACCAACAAGGAACAGCTGTTCAAGGACGACGTGATTC CCGGGGACCTTGGGTTCGACCCGCTCGGTCTCGCGGCCAATGGTGTCAAT CCCGACTACGCCTTGGCCGAGATCAAGCACTGTCGTCTCGCGATGGTAGG GTTCCTTGGGATGGCAGTGCAACAGGCAGTCGACCCCAACGGCGGTGTCC TGGAGCAGTTCCTCAACTGGGCGACTTAAACCACGCTGCAACAGGTTTTG ATGTGATGAACCACGATGGGTGGGGGGCAGGAATCTTCTGGCAACGGAGT CTAGGTACTAAGTAGGTACTCGGCTGATTTGGCTCTGTTTTTTAGGGGTA AGGCGAGACGCGGTGGCTTTTAGGCTGCGGGTTGGGGGAAGGGGCATATG TTATTGCTGCCATGCCCATCATTGCTTAGATAATAATACTATAGTATATT TTAGACTTGCGGAGTTCGTGGCAGGTTTAGGAGCATTATGATCAACAAGG GCAAGGTGGATAAGCGGAATCGAAGATAGAGGGCTCCTTCTCCCCTCCCT TGTCTATCAAGAGCAGCAGGCATTACCAGGCACGGGTTTATGCTTTGCTA TGCGATTTAAAACCCGTAGGCCGTGGGGAGACGCTCGGCGACTATAATCA GCAAGCATTTTGCTTCCAACTGTAGAAGTTGGAGGCGCTAGAGGAGAACC GCTGAACCAAGCTACTCTGAAGAGTGTATTAGTTGGTGTCGTACCAGGAG TATAATGGCCGCACAGGCGCACGCAAGCTCGTCATTGTCAACTGAAAATG TGGTTAGCTCGGGCTTGGCCCGCAACCCCTACATACTATGGTACTTCTTG AGATCTTCGGCATGCTGTCATGCTGTAATCGGAGCAACATATATTGGGAA ACACTAATCGCTAATCGCATCTTCGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig11352:2659..6786-

>mRNA_H-elongata_contig11352.1086.1 ID=mRNA_H-elongata_contig11352.1086.1|Name=mRNA_H-elongata_contig11352.1086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig11352:2659..6786- (Himanthalia elongata Himel1 dioecious)
ATGAAGTCCGCTGTTATGGCTTTTGCATGTGCCTCTTGCGCATCTGCCTT
CATGGCACCACCGCTCGTGACCAACGCTCGCGTGTCGACGCCCAAGACGG
CCACCATGATGTATGAAGTCCGCTGTTATGGCTTTTGCATGTGCCTCTTG
CGCATCTGCCTTCATGGCACCACCGCTCGTGACCAACGCTCGCGTGTCGA
CGCCCAAGACGGCCACCATGATGTCCGAGGGGCCTGGATCATGGTGGTTC
CCTTCCGACGGTTCAAAATCCACTGCGCTTCCATGGGCAGCCAAGCCGCT
TATCGGCGACGGGACCATCGTCGGCGATGCTGGCTTCGACCCCCTCAACC
TGGCTAATGGCCCGGCCGACCTTGTGTGGCTGCGGACTGCGGAACTCAAG
CATGGGCGAATCTGCATGCTCGCGTCGGTAGGCTTGGTTGCCCCCGAGCT
CGTTCAGCACCCTGTCGGGTATGAGGGTTTCCAGTTCCCCGCCGAGTTCA
CCCAGATGAACGCGTTCGCGGCGCTTTCGTCGGTGCCCCGGCTCGGTCTC
GCGCAGATCGTGATCTTAATCTCCCTCGTCGAAGTGGCCTCGTTCACGTC
AAACTTCGTCGCGGAGTACCAGTACGAGGATGACTTGACCAGCCTCGAGC
GCAAATACAAGGTGACGGGCAGGACGGAAGCTCTTGCGGGTGCGGCCAAG
GTAGCTCCGGTCGAGACCAACAAGGAACAGCTGTTCAAGGACGACGTGAT
TCCCGGGGACCTTGGGTTCGACCCGCTCGGTCTCGCGGCCAATGGTGTCA
ATCCCGACTACGCCTTGGCCGAGATCAAGCACTGTCGTCTCGCGATGGTA
GGGTTCCTTGGGATGGCAGTGCAACAGGCAGTCGACCCCAACGGCGGTGT
CCTGGAGCAGTTCCTCAACTGGGCGACTTAACCGAGGGGCCTGGATCATG
GTGGTTCCCTTCCGACGGTTCAAAATCCACTGCGCTTCCATGGGCAGCCA
AGCCGCTTATCGGCGACGGGACCATCGTCGGCGATGCTGGCTTCGACCCC
CTCAACCTGGCTAATGGCCCGGCCGACCTTGTGTGGCTGCGGACTGCGGA
ACTCAAGCATGGGCGAATCTGCATGCTCGCGTCGGTAGGCTTGGTTGCCC
CCGAGCTCGTTCAGCACCCTGTCGGGTATGAGGGTTTCCAGTTCCCCGCC
GAGTTCACCCAGATGAACGCGTTCGCGGCGCTTTCGTCGGTGCCCCGGCT
CGGTCTCGCGCAGATCGTGATCTTAATCTCCCTCGTCGAAGTGGCCTCGT
TCACGTCAAACTTCGTCGCGGAGTACCAGTACGAGGATGACTTGACCAGC
CTCGAGCGCAAATACAAGGTGACGGGCAGGACGGAAGCTCTTGCGGGTGC
GGCCAAGGTAGCTCCGGTCGAGACCAACAAGGAACAGCTGTTCAAGGACG
ACGTGATTCCCGGGGACCTTGGGTTCGACCCGCTCGGTCTCGCGGCCAAT
GGTGTCAATCCCGACTACGCCTTGGCCGAGATCAAGCACTGTCGTCTCGC
GATGGTAGGGTTCCTTGGGATGGCAGTGCAACAGGCAGTCGACCCCAACG
GCGGTGTCCTGGAGCAGTTCCTCAACTGGGCGACTTAA
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