mRNA_H-elongata_contig11350.1083.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11350.1083.1
Unique NamemRNA_H-elongata_contig11350.1083.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11350.1083.1 vs. uniprot
Match: D7FM51_ECTSI (FAM194 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM51_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 6.440e-66
Identity = 103/163 (63.19%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:   16 GNNEENIELYSSGLRASAFKADGSGFIYYPSGNVAIYKGIIDGRCRYYIYGNDARSTPLGAVDEHAVGFFLGPCRVRLVLNKIGGLLTDESGYIVKEWRYDPGARIPPHTEVLKIRLNASVTFEFRDKSDMMIKFQQDGVCRELDAGVRPKQERSYLDHRWQV 504
            G   +N E Y SG  AS FK DGSGFIYYPSG VA+ KG++DGR RYY+YG+D RSTPLGAV+EH VGFFLGP  VRL L+K+GGL+TD  GYI +EWRYDPGA +PP T VL ++LN S+ FEF D+ +M IKF  +G+  ELDAGV PK+E +YLD+R Q 
Sbjct:    8 GTKADNAEYYPSGRLASVFKEDGSGFIYYPSGLVAVCKGVVDGRGRYYVYGDDRRSTPLGAVNEHGVGFFLGPSGVRLALSKVGGLITDRHGYIAREWRYDPGAHMPPPTSVLDVKLNKSMNFEFLDRREMRIKFLHEGISHELDAGVHPKREGTYLDNRQQA 170
[Close]
BLAST of mRNA_H-elongata_contig11350.1083.1 vs. uniprot
Match: UPI001560AE95 (uncharacterized protein LOC117415242 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560AE95)

HSP 1 Score: 58.5 bits (140), Expect = 7.400e-7
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:   79 DGSGFIYYPSGNVAI---YKGIIDGRCRYYIYGND------ARSTPLGAVDEHAVGFFLGPCRVRLVLNKIGGLLTDESGYIVKEWRYDPGARIPPHTEVLKIRLNASVTFEFRDKSDMMIKF--QQDGV 435
            DGS FIYYPSG +A+   Y G+  G     ++ +       A  TP G    HA     G   V L+L++ GG+LTDE G + KEW +  G ++    E + I++N  +T      + + + +  QQ+ V
Sbjct:  392 DGSSFIYYPSGRIAVCQSYSGLPCGGFYTNVFSDSSDPYTLATFTPFG----HASVCHPGSHTVALLLDQDGGILTDEEGTVTKEWNWAQGVKL---NETVLIQVNDFITVRVVSPTSINLSYRWQQESV 514
[Close]
BLAST of mRNA_H-elongata_contig11350.1083.1 vs. uniprot
Match: UPI001B7E4516 (uncharacterized protein LOC121320255 isoform X1 n=2 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E4516)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-6
Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:   79 DGSGFIYYPSGNVAI---YKGIIDGRCRYYIYGND------ARSTPLGAVDEHAVGFFLGPCRVRLVLNKIGGLLTDESGYIVKEWRYDPGARIPPHTEVLKIRLN--ASVTFEFRDKSDMMIKFQQDGV 435
            DGS FIYYPSG +A+   Y G+  G     ++ +       A  TP G    HA     G   V L+L++ GG+LTDE G + KEW +  G ++    E + I++N   SV     +   +  ++QQ+ V
Sbjct:  393 DGSSFIYYPSGRIAVCQSYSGLPCGGFYTNVFSDSPDLYTLATFTPFG----HASVCHPGSNTVALLLDQDGGILTDEEGTVTKEWNWAQGVKL---NETVLIQVNDFISVRVVSPNSISLSYRWQQESV 515
[Close]
BLAST of mRNA_H-elongata_contig11350.1083.1 vs. uniprot
Match: UPI000B3DA08E (glutamate-rich protein 6B isoform X1 n=2 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3DA08E)

HSP 1 Score: 55.5 bits (132), Expect = 7.840e-6
Identity = 41/143 (28.67%), Postives = 64/143 (44.76%), Query Frame = 1 
Query:   79 DGSGFIYYPSGNVAIYKGIIDGRCRYYIYGNDARSTPLGAVDE---HAVGFFLGPCRVRLVLNKIGGLLTDESGYIVKEWRY-DPGARIP-PHTEVLKIRLNASVTFEFRDKSDMMIKFQQDGVCRELDAGVRPKQERSYLDH 492
            DGSG +YYPSGN+AI     +     Y+   D R   + A      H V F    C  R +L+   G+  D++G   K W + D    I  P  + + ++LNA +T +   +  + + F     C   ++G RPK +     H
Sbjct:  433 DGSGQVYYPSGNIAILIAFTEEAQFTYVILEDDRHPRIRAAFRSRGHGVTFHSNGCP-RTILSPCTGICFDQAGVRQKHWNWHDLSHHIHRPPFQPITMKLNAHLTLKIAAQDKIHLWFASRNNCIRFNSGARPKLKDPKTSH 574
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11350.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FM51_ECTSI6.440e-6663.19FAM194 domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI001560AE957.400e-732.31uncharacterized protein LOC117415242 n=1 Tax=Acipe... [more]
UPI001B7E45161.270e-633.08uncharacterized protein LOC121320255 isoform X1 n=... [more]
UPI000B3DA08E7.840e-628.67glutamate-rich protein 6B isoform X1 n=2 Tax=Numid... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11350contigH-elongata_contig11350:651..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue2.5e-57
Seed eggNOG ortholog2880.D7FM51
EggNOG free text desc.FAM194 protein
EggNOG OGs29SX0@1,2RXEY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size519
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.6024537-CDS-H-elongata_contig11350:650..9081622929654.6024537-CDS-H-elongata_contig11350:650..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11350 651..908 -
1691679107.4109492-CDS-H-elongata_contig11350:650..9081691679107.4109492-CDS-H-elongata_contig11350:650..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11350 651..908 -
1622929654.621265-CDS-H-elongata_contig11350:1065..13261622929654.621265-CDS-H-elongata_contig11350:1065..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11350 1066..1326 -
1691679107.4212482-CDS-H-elongata_contig11350:1065..13261691679107.4212482-CDS-H-elongata_contig11350:1065..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11350 1066..1326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11350.1083.1prot_H-elongata_contig11350.1083.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11350 651..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11350.1083.1

>prot_H-elongata_contig11350.1083.1 ID=prot_H-elongata_contig11350.1083.1|Name=mRNA_H-elongata_contig11350.1083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MAPPHGNNEENIELYSSGLRASAFKADGSGFIYYPSGNVAIYKGIIDGRC
RYYIYGNDARSTPLGAVDEHAVGFFLGPCRVRLVLNKIGGLLTDESGYIV
KEWRYDPGARIPPHTEVLKIRLNASVTFEFRDKSDMMIKFQQDGVCRELD
AGVRPKQERSYLDHRWQVLNLN*
back to top

mRNA from alignment at H-elongata_contig11350:651..1326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11350.1083.1 ID=mRNA_H-elongata_contig11350.1083.1|Name=mRNA_H-elongata_contig11350.1083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=676bp|location=Sequence derived from alignment at H-elongata_contig11350:651..1326- (Himanthalia elongata Himel1 dioecious)
ATGGCGCCGCCACATGGAAACAACGAAGAAAACATTGAATTATACTCGTC
TGGCCTTCGGGCATCAGCCTTCAAGGCCGATGGTTCGGGCTTCATCTATT
ACCCTTCGGGCAACGTTGCAATATACAAGGGGATAATCGATGGACGTTGT
CGATACTATATATATGGAAACGATGCGAGGTCTACGCCGCTTGGCGCTGT
CGACGAGCACGCGGTTGGATTTTTCTTGGGACCTTGTAGAGTACGTCTTG
TCCTCAACAAGGTACCCATATATAATTTGAAAATATGATATACAGCAACA
TGTTGTGCATTCAACCGCGATATGTAGACATGCGCTCTAGGCTTATTTCA
ACTACGATGTTCGCAAATGTTGGTAAACTTACCACGCGCCCCTTCTTAAA
ATGTTCGCGTTCCGTCAGATAGGAGGACTTTTGACAGATGAGTCCGGCTA
CATTGTGAAGGAGTGGCGGTACGACCCCGGTGCTCGAATCCCCCCCCACA
CCGAAGTCCTCAAGATCAGACTTAATGCGAGTGTTACCTTCGAATTCCGA
GACAAAAGCGATATGATGATCAAGTTTCAGCAGGATGGTGTATGTCGCGA
GCTGGATGCTGGAGTGCGACCGAAGCAAGAAAGATCTTACCTTGATCACA
GGTGGCAAGTTTTGAATTTGAATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11350:651..1326-

>mRNA_H-elongata_contig11350.1083.1 ID=mRNA_H-elongata_contig11350.1083.1|Name=mRNA_H-elongata_contig11350.1083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig11350:651..1326- (Himanthalia elongata Himel1 dioecious)
ATGGCGCCGCCACATGGAAACAACGAAGAAAACATTGAATTATACTCGTC
TGGCCTTCGGGCATCAGCCTTCAAGGCCGATGGTTCGGGCTTCATCTATT
ACCCTTCGGGCAACGTTGCAATATACAAGGGGATAATCGATGGACGTTGT
CGATACTATATATATGGAAACGATGCGAGGTCTACGCCGCTTGGCGCTGT
CGACGAGCACGCGGTTGGATTTTTCTTGGGACCTTGTAGAGTACGTCTTG
TCCTCAACAAGATGGCGCCGCCACATGGAAACAACGAAGAAAACATTGAA
TTATACTCGTCTGGCCTTCGGGCATCAGCCTTCAAGGCCGATGGTTCGGG
CTTCATCTATTACCCTTCGGGCAACGTTGCAATATACAAGGGGATAATCG
ATGGACGTTGTCGATACTATATATATGGAAACGATGCGAGGTCTACGCCG
CTTGGCGCTGTCGACGAGCACGCGGTTGGATTTTTCTTGGGACCTTGTAG
AGTACGTCTTGTCCTCAACAAGATAGGAGGACTTTTGACAGATGAGTCCG
GCTACATTGTGAAGGAGTGGCGGTACGACCCCGGTGCTCGAATCCCCCCC
CACACCGAAGTCCTCAAGATCAGACTTAATGCGAGTGTTACCTTCGAATT
CCGAGACAAAAGCGATATGATGATCAAGTTTCAGCAGGATGGTGTATGTC
GCGAGCTGGATGCTGGAGTGCGACCGAAGCAAGAAAGATCTTACCTTGAT
CACAGGTGGCAAGTTTTGAATTTGAATTGAATAGGAGGACTTTTGACAGA
TGAGTCCGGCTACATTGTGAAGGAGTGGCGGTACGACCCCGGTGCTCGAA
TCCCCCCCCACACCGAAGTCCTCAAGATCAGACTTAATGCGAGTGTTACC
TTCGAATTCCGAGACAAAAGCGATATGATGATCAAGTTTCAGCAGGATGG
TGTATGTCGCGAGCTGGATGCTGGAGTGCGACCGAAGCAAGAAAGATCTT
ACCTTGATCACAGGTGGCAAGTTTTGAATTTGAATTGA
back to top