mRNA_H-elongata_contig113367.1080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113367.1080.1
Unique NamemRNA_H-elongata_contig113367.1080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.200e-15
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   35 KEVA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLYATSTSPRSRTSP 211
            K VA Q FGNQASA+ VE DFSGCG+   P+RSR+D YWVEMVMFL A   S R    P
Sbjct:  406 KHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRINIP 464
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BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-14
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLYA 178
            VA QVFGNQA+ SQVE DFSG GIL AP+RSR+DTYWVE+VMFL A
Sbjct:  210 VAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNA 255
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BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-14
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLYA 178
            VA QVFGNQA A+QVE DFSGC  L   +RSR+DTYWVEMVMFL+A
Sbjct:   48 VAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHA 93
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-12
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLY 175
            VA QV GNQA A+QVE DFS C  L   +RSRIDTYWVEMVMFL+
Sbjct:    8 VAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLH 52
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.230e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:   35 KEVA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLYA 178
            K VA Q FG+Q SA+ VE DFSGCG+   P+RSR++ YWVEMVMFL A
Sbjct:  748 KHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNA 795
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.710e-12
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLY 175
            VA QV GNQA A+QVE DFS C  L   +RSRIDTYWVEMVMFL+
Sbjct:  123 VAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLH 167
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.330e-11
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLY 175
            VA QV GNQA A+QVE DFS C  L   +RSRIDTYWVEMVMFL+
Sbjct:  521 VAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLH 565
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.310e-10
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLY 175
             A +V GNQA A+QVE DFS C  L   +RSRIDTYWVEMVMFL+
Sbjct:  224 TAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLH 268
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.320e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:   35 KEVA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFL 172
            K VA Q FG+QASA+Q+E DFS CG+    +RSR + YW+EMVM L
Sbjct:  508 KYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVL 553
[Close]
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Match: A0A0P1AKL2_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKL2_PLAHL)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   41 VA*QVFGNQASASQVEHDFSGCGILFAPHRSRIDTYWVEMVMFLY 175
            VA  +FGN ASA+ +E DF   G+L  P R+ +DT+ VEM++FLY
Sbjct:   28 VARCIFGNSASAAGIERDFEIAGVLLNPRRTNLDTFVVEMILFLY 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113367.1080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K8W6_9PHAE7.200e-1562.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.500e-1478.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE2.900e-1473.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE1.020e-1271.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE5.230e-1264.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE9.710e-1271.11Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KZ46_9PHAE3.330e-1171.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE2.310e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE2.320e-858.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AKL2_PLAHL1.240e-651.11Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113367contigH-elongata_contig113367:944..1554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size282
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113367.1080.1prot_H-elongata_contig113367.1080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113367 964..1436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.0118425-UTR-H-elongata_contig113367:943..9631622929654.0118425-UTR-H-elongata_contig113367:943..963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113367 944..963 +
1691679107.0467138-UTR-H-elongata_contig113367:943..9631691679107.0467138-UTR-H-elongata_contig113367:943..963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113367 944..963 +
1622929654.0769398-UTR-H-elongata_contig113367:1436..15541622929654.0769398-UTR-H-elongata_contig113367:1436..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113367 1437..1554 +
1691679107.0983083-UTR-H-elongata_contig113367:1436..15541691679107.0983083-UTR-H-elongata_contig113367:1436..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113367 1437..1554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.0384378-CDS-H-elongata_contig113367:963..9841622929654.0384378-CDS-H-elongata_contig113367:963..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113367 964..984 +
1691679107.0605128-CDS-H-elongata_contig113367:963..9841691679107.0605128-CDS-H-elongata_contig113367:963..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113367 964..984 +
1622929654.057284-CDS-H-elongata_contig113367:1313..14361622929654.057284-CDS-H-elongata_contig113367:1313..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113367 1314..1436 +
1691679107.077569-CDS-H-elongata_contig113367:1313..14361691679107.077569-CDS-H-elongata_contig113367:1313..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113367 1314..1436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113367.1080.1

>prot_H-elongata_contig113367.1080.1 ID=prot_H-elongata_contig113367.1080.1|Name=mRNA_H-elongata_contig113367.1080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MFVATKKLLSRCLGIRPVPRRSSTTSVVAVSSSRPTGAVLTHTGWRW*
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mRNA from alignment at H-elongata_contig113367:944..1554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113367.1080.1 ID=mRNA_H-elongata_contig113367.1080.1|Name=mRNA_H-elongata_contig113367.1080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=611bp|location=Sequence derived from alignment at H-elongata_contig113367:944..1554+ (Himanthalia elongata Himel1 dioecious)
TCAACCACCTCCTGGTGGAGATGTTCGTCGCCACAAAGAAGGTCAGTGGT
GTTTTGGGTCTTTGTGTGTGAGAGTTTTTACCTCGATCTCTCGAACTTCA
AACTGACAAAACGCCCGATCAGAAAAAAGAGTGCGTGACACAAAATACAC
TGCCACCCCCACGGGACAGGCCTGTGGCCATCAAAACTCACTGAGATCGC
CTCAGAAACGTGTTAGGGCTTCGCCTAACGGTATTGTGGCGATCGGCGGT
TGCTTGCTATCGTGTGTTCTGTGTTTGGGTGTGGTGTGCGGAGAAAACGG
CGGTGTACAATGTAGCGGGGAGAAAGCAAGCAAAGCACAAGCCGGAAGAC
GTTCTCCTGCCTCTCACCAGTTGCTTAGCAGGTGTTTGGGAATCAGGCCA
GTGCCTCGCAGGTCGAGCACGACTTCAGTGGTTGCGGTATCCTCTTCGCG
CCCCACAGGAGCCGTATTGACACATACTGGGTGGAGATGGTGATGTTCCT
TTACGCTACAAGCACATCCCCGCGGTCAAGGACATCCCCATGATCGCCTC
AAATGATATTCGCGCATGTCTTCCGGCACGGTTCACCGGGGGGGATGCTG
ACCTCGCGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig113367:944..1554+

>mRNA_H-elongata_contig113367.1080.1 ID=mRNA_H-elongata_contig113367.1080.1|Name=mRNA_H-elongata_contig113367.1080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig113367:944..1554+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGTCGCCACAAAGAAGATGTTCGTCGCCACAAAGAAGTTGCTTAG
CAGGTGTTTGGGAATCAGGCCAGTGCCTCGCAGGTCGAGCACGACTTCAG
TGGTTGCGGTATCCTCTTCGCGCCCCACAGGAGCCGTATTGACACATACT
GGGTGGAGATGGTGATTGCTTAGCAGGTGTTTGGGAATCAGGCCAGTGCC
TCGCAGGTCGAGCACGACTTCAGTGGTTGCGGTATCCTCTTCGCGCCCCA
CAGGAGCCGTATTGACACATACTGGGTGGAGATGGTGA
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