mRNA_H-elongata_contig11335.1078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11335.1078.1
Unique NamemRNA_H-elongata_contig11335.1078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 2.400e-131
Identity = 260/408 (63.73%), Postives = 292/408 (71.57%), Query Frame = 2 
Query:  218 LSVCDAPEAEALAAAVASAAVGTTPSPASEFGFSKAADDQPSSDQDGGPMNSLCGGPQVAGAAAPVAYGKDNDVEGKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESRHNRASRDDMSGGASPGVWSGEPSPFSAPR-RAQPVSPG-RGPAAGYGMGNSFAYGNNSAANFIAANVATYXXXXXXXXXXXXXXXLYPAPTFGSG-----RNAGTATYNAGVGTGTSYVGPLPPQVNYGLQGQERQPQYAQAEYISAVRHQQHAHHQI 1420
            L++ DAPEA ALAAAVASAAVG T SPAS  GFSKA ++  SS+Q         GGPQ  G A  VA+ KDNDVEGKLFIGGISWQTTE+GLR+HF KYG +A+IALMKDKYTGHPRGFGFIKFED  VLDEIL+ EHKIDGK+VDVKRAVPKSEAPGP++R +RP+E NKIFVGGLAPTVMMAEFRKYFE FGGVVDAVVMFDRQTQRSRGFGFVTF E+ VVHDIM  THEINGK+VEVKRAEPKE+R  RA R + +GG+SP +  G  +PF+  R RAQP   G R          SF Y NN  A F     A+Y   XXXXXXXXXXXX               R AG A    G  T  S+   LPPQ  YGL   + Q QY QAEY +A+R+QQ A  Q+
Sbjct:   83 LNLGDAPEAGALAAAVASAAVGATSSPASASGFSKAVEES-SSNQ---------GGPQAPGIAGSVAHDKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGRAPRGEFAGGSSPALGGGVAAPFTGTRGRAQPFGAGGRXXXXXXXXXXSFPY-NNGGAPFNGNAAASYGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLP--DGQAQYTQAEYAAAMRNQQQAQAQV 477
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.350e-88
Identity = 187/297 (62.96%), Postives = 209/297 (70.37%), Query Frame = 2 
Query:  539 MKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESRHNRASRDDMSGGASPGVWSGEPSPFSAPR-RAQPVSPG-RGPAAGYGMGNSFAYGNNSAANFIAANVATYXXXXXXXXXXXXXXXLYPAPTFGSG-----RNAGTATYNAGVGTGTSYVGPLPPQVNYGLQGQERQPQYAQAEYISAVRHQQHA 1408
            MKDKYTGHPRGFGFIKFED  VLDEIL+ EHKIDGK+VDVKRAVPKSEAPGP++R +RP+E NKIFVGGLAPTVMMAEFRKYFE FGGVVDAVVMFDRQTQRSRGFGFVTF E+ VVH+IM  THEINGK+VEVKRAEPKE+R  RA R + +GG+SP +  G  +PF+  R RAQP   G R          SF Y NN  A F     A+Y   XXXXXXXXXXXX               R AG A    G  T  S+   LPPQ  YGL   + Q QY QAEY +A+R+QQ A
Sbjct:    1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGKMVEVKRAEPKENRSGRAPRGEFAGGSSPALGGGVAAPFTGTRGRAQPFGAGGRXXXXXXXXXXSFPY-NNGGAPFNGNAAASYGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLP--DGQAQYTQAEYAAAMRNQQQA 294
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 264 bits (675), Expect = 9.990e-78
Identity = 134/187 (71.66%), Postives = 157/187 (83.96%), Query Frame = 2 
Query:  425 KDNDVEGKLFIG---GISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILAL-EHKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESRHN 973
            KD+DV GKLF+G   GISWQT+E+ L  HFSK+G +A++ALMKDKYTG PRGFGFIKFED  VLD +LA  EH IDG++VDVKRAVPKSEAPGPA R  R ++FNK+FVGGLAP+V  AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTF +E+VV +++  THE+NGK+VEVK AEPKESR N
Sbjct:    9 KDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRN 194
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.670e-69
Identity = 115/168 (68.45%), Postives = 140/168 (83.33%), Query Frame = 2 
Query:  425 KDNDVEGKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILA-LEHKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEING 925
            KDND+ GK+F+GGISWQT+++ L  +FSK+G +A++ALMKDKYTG PRGFGFIKFED  V+D +L   EH IDG+ VDVKRAVPKSEAPGP+ R  RP++ NK+FVGGLAP+V +AEFR YFE FG V DAVVMFDRQT RSRGFGFVTF E++VV +++  THEING
Sbjct:   17 KDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPS-RTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEING 183
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A484E761_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E761_BRELC)

HSP 1 Score: 214 bits (546), Expect = 1.470e-57
Identity = 108/184 (58.70%), Postives = 135/184 (73.37%), Query Frame = 2 
Query:  443 GKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSE-APGPA----ARPNRPS----EFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESR 967
            GKLFIGG+SW+TTE  LR HF KYG++ + ALMKDKYTG PRGFGF+ F D+  +D +L   H +DG+ V+VKRA+P+   APGP+     R N  S    E  KIFVGGLAPTV   +FR YFE FG + DAVVM DR TQRSRGFGF+TF +E+ V +++  +HEI+GK VE+KRAEPKE+R
Sbjct:  119 GKLFIGGVSWETTEDTLRQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFADALAIDRVLEETHTLDGRSVEVKRAIPRERTAPGPSDFRGGRGNNSSGGYTEQKKIFVGGLAPTVAEEDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEDESSVVEVISKSHEIHGKTVEIKRAEPKEAR 302
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A7S3UV52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV52_HETAK)

HSP 1 Score: 211 bits (537), Expect = 2.130e-57
Identity = 107/201 (53.23%), Postives = 141/201 (70.15%), Query Frame = 2 
Query:  401 AAAPVAYGK------------DNDVEGKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALE-HKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKES 964
            AAA VA G+             +D+E K+F+GGISW TTE GL+ +F K+G V  + LMKD++TG PRGF F+KFED  V+D +L  E H IDG+ VDVKRAVP+ +AP   A  ++P E  KIFVGGLAPTV  A+F++YF +FG V DAVVM DR+T RSRGFGF+TF  E  V D ++ TH I+ K VE+K+A+P+++
Sbjct:   22 AAAAVAEGEAAVDGDAGKKTEQDDIEFKIFVGGISWATTEDGLKFYFDKFGKVEQVNLMKDRHTGQPRGFAFVKFEDKSVIDSVLQAEAHSIDGRNVDVKRAVPRDQAPARGANSSKPVEALKIFVGGLAPTVNEADFKEYFSKFGEVTDAVVMIDRKTSRSRGFGFITFKTEQSVKDALKETHLIHDKAVEIKQAQPRDN 222
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.340e-57
Identity = 108/187 (57.75%), Postives = 138/187 (73.80%), Query Frame = 2 
Query:  443 GKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSE-APGPA--------ARPNRP---SEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESR 967
            GKLFIGG+SW+TTE+ LR+HF KYG + + ALMKDK++G PRGFGF+ F D  VLD +L   H IDG+ V+VKRA+P+ + A GP+         R N     +E  K+FVGGL P+V   +FR+YFE FG + DAVVMFDR+TQRSRGFGFVTF EE  V +++  THE++GKVVE+KRAEPKE+R
Sbjct:  102 GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKEAR 288
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BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 207 bits (526), Expect = 2.770e-56
Identity = 106/190 (55.79%), Postives = 132/190 (69.47%), Query Frame = 2 
Query:  443 GKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSE-APGPA----ARPNRPS----------EFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESR 967
            GKLFIGG+SW+TTE  LR HF KYG + + ALMKDKYTG PRGFGF+ F D+  +D +L   H +DG+ V+VKRA+P+   APG +    AR    S          E  KIFVGGLAPT+   +FR YFE FG + DAVVM DR TQRSRGFGF+TF +E+ V +++   HEI+GK VE+KRAEPKE+R
Sbjct:  127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAPGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPKEAR 316
[Close]
BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 201 bits (512), Expect = 4.700e-56
Identity = 95/187 (50.80%), Postives = 132/187 (70.59%), Query Frame = 2 
Query:  425 KDNDVEGKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPKESRHNRASR 985
            + NDV GKLF+GG+SWQTTE GL+ +F K+G + + A+MKDK+TG PRGFGF++FED+  +D++LA EH IDG+++D+K+A+ +  AP   +      +  KIFVGGL   V   +F+ YF +FG + DAVVM DR T RSRGFGFVT+ +   V+ +M  TH +  KVVE+KRAEP++S     SR
Sbjct:    8 RSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAPRAISEK---IDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNETHTLRDKVVEIKRAEPRDSSSLAPSR 191
[Close]
BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Match: W4FGL9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGL9_9STRA)

HSP 1 Score: 209 bits (532), Expect = 7.040e-56
Identity = 108/210 (51.43%), Postives = 140/210 (66.67%), Query Frame = 2 
Query:  380 GGPQVAGA--AAPVAYGKDNDVEGKLFIGGISWQTTEQGLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKIDGKIVDVKRAVPKSEAPG---------------PAARPNRPSEFNKIFVGGLAPTVMMAEFRKYFERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVEVKRAEPK 958
            GG  V G+   AP + G      GK+F+GG+SW+TTE  LR+HF +YG + + ALMKDKY+G PRGFGF+ FED+ V+D +L+  H +DG+ V+VKRAVP+  A G                     RPSE  KIFVGGL P+V   +FR YFE FG + DA+VM DR TQRSRGFGFV+F EE  V +++  +HE++GKVVE+KRAEPK
Sbjct:   71 GGSNVGGSYQPAPASQGA-----GKIFVGGVSWETTEDNLRSHFGQYGALTDAALMKDKYSGQPRGFGFVTFEDASVVDRVLSETHTLDGRNVEVKRAVPRDSAGGGXXXXXXXXXXXXXXXXXXXGRPSESKKIFVGGLPPSVTNDDFRAYFEDFGKITDAIVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGKVVEIKRAEPK 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11335.1078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW71_ECTSI2.400e-13163.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV91_9PHAE2.350e-8862.96RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZAL5_9STRA9.990e-7871.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CMD2_9STRA1.670e-6968.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484E761_BRELC1.470e-5758.70Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S3UV52_HETAK2.130e-5753.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0WG76_9STRA2.340e-5757.75Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
A0A0P1AWA8_PLAHL2.770e-5655.79Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A7S3UWI8_HETAK4.700e-5650.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W4FGL9_9STRA7.040e-5651.43Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11335contigH-elongata_contig11335:2601..7461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.0
Seed ortholog evalue2.1e-113
Seed eggNOG ortholog2880.D7FW71
KEGG koko:K14411
KEGG Pathwayko03015,map03015
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_003630.1
Exons4
Model size2511
Cds size1290
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11335.1078.1prot_H-elongata_contig11335.1078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11335 3635..7274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.8032808-UTR-H-elongata_contig11335:2600..36341622929653.8032808-UTR-H-elongata_contig11335:2600..3634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 2601..3634 -
1691679106.9601414-UTR-H-elongata_contig11335:2600..36341691679106.9601414-UTR-H-elongata_contig11335:2600..3634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 2601..3634 -
1622929653.8871138-UTR-H-elongata_contig11335:7274..74611622929653.8871138-UTR-H-elongata_contig11335:7274..7461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 7275..7461 -
1691679107.0133867-UTR-H-elongata_contig11335:7274..74611691679107.0133867-UTR-H-elongata_contig11335:7274..7461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11335 7275..7461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.8217218-CDS-H-elongata_contig11335:3634..44091622929653.8217218-CDS-H-elongata_contig11335:3634..4409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 3635..4409 -
1691679106.9697258-CDS-H-elongata_contig11335:3634..44091691679106.9697258-CDS-H-elongata_contig11335:3634..4409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 3635..4409 -
1622929653.83964-CDS-H-elongata_contig11335:5175..52751622929653.83964-CDS-H-elongata_contig11335:5175..5275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 5176..5275 -
1691679106.985582-CDS-H-elongata_contig11335:5175..52751691679106.985582-CDS-H-elongata_contig11335:5175..5275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 5176..5275 -
1622929653.8571765-CDS-H-elongata_contig11335:6457..65641622929653.8571765-CDS-H-elongata_contig11335:6457..6564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 6458..6564 -
1691679106.9960244-CDS-H-elongata_contig11335:6457..65641691679106.9960244-CDS-H-elongata_contig11335:6457..6564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 6458..6564 -
1622929653.8719475-CDS-H-elongata_contig11335:6966..72741622929653.8719475-CDS-H-elongata_contig11335:6966..7274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 6967..7274 -
1691679107.004925-CDS-H-elongata_contig11335:6966..72741691679107.004925-CDS-H-elongata_contig11335:6966..7274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11335 6967..7274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11335.1078.1

>prot_H-elongata_contig11335.1078.1 ID=prot_H-elongata_contig11335.1078.1|Name=mRNA_H-elongata_contig11335.1078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=430bp
MEELAGRGGSLSVCDAPEAEALAAAVASAAVGTTPSPASEFGFSKAADDQ
PSSDQDGGPMNSLCGGPQVAGAAAPVAYGKDNDVEGKLFIGGISWQTTEQ
GLRNHFSKYGMVANIALMKDKYTGHPRGFGFIKFEDSRVLDEILALEHKI
DGKIVDVKRAVPKSEAPGPAARPNRPSEFNKIFVGGLAPTVMMAEFRKYF
ERFGGVVDAVVMFDRQTQRSRGFGFVTFVEETVVHDIMRTTHEINGKVVE
VKRAEPKESRHNRASRDDMSGGASPGVWSGEPSPFSAPRRAQPVSPGRGP
AAGYGMGNSFAYGNNSAANFIAANVATYGQTPYGYPAYGYNAQLYPAPTF
GSGRNAGTATYNAGVGTGTSYVGPLPPQVNYGLQGQERQPQYAQAEYISA
VRHQQHAHHQIHAQQATHLGEETYRPQLY*
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mRNA from alignment at H-elongata_contig11335:2601..7461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11335.1078.1 ID=mRNA_H-elongata_contig11335.1078.1|Name=mRNA_H-elongata_contig11335.1078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4861bp|location=Sequence derived from alignment at H-elongata_contig11335:2601..7461- (Himanthalia elongata Himel1 dioecious)
GTAGCTTACTCGGGCGATGATAGTGATCACAAAACGCCAAGAACACGATC
GATCGTTGAAACCAGCAGGGTGCAGCCAGGTAAGTAAGGAAATATAATAC
TGCCAAACCGCGTGTTTCGAGTCCGACGCAATACCACTCCGTCTTCCTCT
CGGATATTCACCTCCAGCGACGGTATCGGGTATCGATATGGAGGAGTTGG
CGGGGCGGGGGGGCAGTTTAAGCGTATGTGACGCTCCTGAAGCAGAAGCA
CTGGCAGCTGCCGTAGCATCTGCCGCTGTTGGCACCACACCGTCCCCTGC
TTCCGAGTTCGGGTTTTCGAAGGCGGCTGACGACCAACCCTCCTCCGACC
AGGACGGAGGCCCAATGAACTCTCTTTGCGGAGGACCTCAAGTGGCTGGC
GCTGCCGCACCGGTGGCTTATGGCAAGGATAACGATGTCGAGGGAAAACT
TTTCATTGGCGGAATATCGTGGCAGACAACAGAACAGGGTCTCAGGTACT
GTAAGCCCGATAAAGACACATTATTATCAGATCTGTGTCGAGGAGAGATG
GAAATAACAAGGCCAATAGGGTCCGATGGGGTGGGTTCCCCCGTTTCTTT
CTTGGGTGTCGTGTATAAGGGTCACGTTGGAAGTCCGACCATTTCGGGGA
AACCACCTATTTTACATAATTTGCTCCTTGATCTTTTCTCCACGCGAATC
AAACGCGGCTCTTCGAATAACAGGTTTTTCTTGCCATAGTACATAAAACA
TTTCGTGTTTTCATCTATTTGTACTTTACATACATACATGGTTTTAGTTC
CAAGCATGACATTATTTTGCCATTTGCAACCGATAAATCTTCGCTGAAAC
CGAGAAACATTATCCCACCCCTGATCTCGTGTTTCACGTTCCTCCAGAAA
TCATTTTAGCAAGTACGGCATGGTTGCAAACATCGCGCTCATGAAGGACA
AGTACACTGGGCATCCTAGAGGCTTTGGTTTCATCAAGTTCGAGGATTCC
AGAGGTGCGATTCCTTTTCTTGGCAAGAACTTACTTTATCTCTAGAACCA
GGGCCATTCCTTTTTTATTTATACCGTGAAGATGTTTGGGTCAGGTAGGA
TGCGGAAGAACCTAATACCCTCGCATTTTCGGAATAAATGGGACCATATT
CCCTACTACAGCTAGCCAGTAATCGGTGACAAATTGATTAGATCACCAAA
GGATCTTTACAAATCCATCCGGCGATTAGGTGTTGCCTGGAAATTCCGAT
CGCATGCTGGCAAGAAGGCCATTTTCGCAAAAATTCCAAAATTCGAATAT
CAACAACAATATGTTAGTAATTAATGAAAACCAAGTGACTGTTGAAGGTT
GCGAGATATATTTGTGGATGTTCTGTTCCCACCAACCATCGCCACTACTC
TTTCATGGTCTGCTGGTGAAACATCAACATTTCGATTTCATTTACCTTTG
TAGTGTTTTTTTTTAATTTATTGATCAAAATACCTGACGGAGTTTTCTCG
CGATTTCGGACAACTACAACTACTGTACTGTGGTACGCGAAGCGGGCCGT
CACTATGATATCATGTGATGTGATCTATTAGAGTAATTTGTTGAACTTCC
ACGAACTGGAGTACCAACACCGTTTGGCATTTAGCATGGTTGAGACCCGA
TGTGTTAATTATGTCAAGAAAAAAACGGCATTTATACACAGAGTACTCTA
GATGACTTGTCCTTCCGTCCCTGTCGATCGAACAACCCGTACTCTGTACT
CTGTCGTGGGGCTCTAATACTAATACTAATAACTAATAATCGCCGGATGG
TCGTGCGTGAACATCGCAAACAAAGAACCAGTCGGAGTTTATGGCATTCG
CCGGGAGTGCGGACGAACACTGTGGTAGGAAAGCAATAATTATTCGTTCG
CTAAAAAATATTTTGCGGACTCGGCAAAAACCTTCGACAAGCCCCGTCTG
TGGAAGTAACAAACTGCTTCTTATTATACTGCTTGTCTTAAATTTAATAG
GGCGCCCAAAACGCTTCGGCTTGAGCATGATATATCCTCGTTGTCACTCC
TTGGAAAGTATCAACCAATTCTTCCCTTGGCCATCTTGCGAAATAACCTA
CTGTACACTTCGATAATTTCGTAATGTTGATGTTGCTGATGTTTATTTTA
TTTTGCCCCCGCGGCGGCGTATCTCGTTTCGGTCAGTTCTCGACGAAATT
CTGGCCTTGGAACACAAGATTGACGGCAAGATTGTGGATGTCAAGCGCGC
AGTGCCCAAGAGCGAAGCACCAGGGCCGGCAGCAAGGTCAAGTAACTTGC
TTATTATACTGCCTATCGGAATGTGGACTTAAGGTGTAGCGAAATGTACG
CCTCACGTCGATGAAGAGCTCTCCTAATGTCTACTCACCATATAGGAGTT
GGTTGCACTTTACAGCATTTTTATTCCTCCAATGTTCTCCCCCTCGTTGC
TACCTATTTCATCTCTGTAATAAATTCGGAACGTCTTGTCTCTCCAACTT
TAGACTTACACGCACCTTATTTCACACGTTGCTGATATGTTGTTGGTAAT
CAAAGTTCCATTCAAGGAGGGGGTATATTTATTCAGGATAAGGAAGATGT
GAGTGTGAGATGTCTTTACACAGTAATGATAATGAGAACTGTAGGGGGTA
TCGTCTTTTCAGCCCTAATACGTATTATGGCGTTTTGCGTTTTATTTTAA
TGTTGCGACCACTGAGTCCCGTCCTATGAAATGGAGGACCACCGGAGTGC
AAGTTGTTACGAGACATGCATTCGGTGACAATTTGGATTGTCCTGCACTA
AGCATCCTACGAGAAATACGTGTTAAAGGGATAATTCGACATGAGGGCAG
CTCAAGGCACTCGCGTTATCCATGCTACAGTAACTGATGACATATATACT
ATATTGGGGTAGCGCATTCATTCCCCTGTCACCTGCATCACATCCGGTCC
GCACCTCGAGCGTTACCCCATTACCGCATACTACCTGATCAACTATTGTA
ACTCAAATGTTGTATCTCGAATGCCATTGTACGACGTAACAAAACCCTCC
AGGCCCAACAGACCATCGGAGTTCAATAAAATATTCGTGGGCGGCTTGGC
CCCGACTGTCATGATGGCAGAGTTCAGGAAGTATTTCGAGAGGTTTGGTG
GCGTAGTGGACGCGGTGGTCATGTTCGACAGGCAGACTCAGCGGTCGCGC
GGCTTTGGCTTTGTTACTTTTGTAGAGGAAACCGTTGTACACGATATCAT
GAGGACCACACACGAGATCAATGGCAAGGTTGTTGAAGTTAAACGTGCCG
AGCCCAAAGAAAGTCGTCACAACCGTGCATCCCGGGATGACATGTCCGGT
GGAGCTTCCCCTGGGGTGTGGAGTGGGGAACCGTCTCCATTTTCAGCACC
ACGGCGAGCCCAGCCTGTTAGCCCCGGACGTGGACCAGCAGCTGGCTACG
GAATGGGAAACTCATTTGCCTACGGAAACAACAGCGCGGCCAACTTCATT
GCAGCGAATGTGGCCACATACGGCCAGACGCCGTACGGATATCCAGCTTA
CGGTTACAATGCGCAGCTTTACCCCGCTCCTACCTTTGGCTCTGGACGCA
ACGCTGGGACTGCTACCTATAACGCCGGGGTTGGGACAGGGACGTCTTAC
GTAGGACCGCTACCACCTCAAGTTAACTACGGTCTACAGGGCCAAGAAAG
GCAACCTCAATATGCCCAAGCGGAGTATATCTCTGCCGTCCGACACCAGC
AACATGCGCACCACCAGATACATGCCCAACAGGCTACCCATCTAGGAGAA
GAGACCTACCGTCCTCAGCTCTACTAAGACGGTCAGAGTCAGAGTCTCGA
TTATTTTTCATGGCATCGTAGCAGCATTTCTAATCGGCAATATCATTAGT
ATTGGAAGCTATCGGAGGCGAATGCTGATAGGGCGCAGGTTTGCTTTGAA
GCATGCTGTAGACAGTAGCTCCTTTCCACGCTTGTACTGGTCCGTCTTGC
GTCTTGCGTTTTTGGTTGTAGGCAGCATGGCCGAGTTTTGTAAACGACGT
CCCACACATATTATTGTGTGTACGTTACAGTCGTGCCTAAAAAAAGTGTT
CAATCTGTTGTTTCGGTGCTTTTGAACAAAATAGTCTGCCAACGGTTGGA
GGTTGGAGGTTTCGCTTCGGAATATGCTGGTAATATTTTTCTGCCCATAA
GGGATCGCGCTGGGAGAAAGGTGCTCAAAGCACTTATGCTCGAAGCTTGG
GCGATATTCATCGGCAGAAATATATTTTGGTGATAATGTGCATCTCCGCT
CGATCGGTACGCGCAAATTAGGTTATCGGTTCAATTCGGCTTTGAGTTGA
GGTATTTGACCTGTACAAATGGGCTACAATTTTTGCACATACGCGCCTGT
GCATCAAACCTCGTTTTTAAGTGTAGAAGAATCCATTACTGATCAGAGTT
CGGTTCGTAGGGGTGGATTTCGGACAGTGTGGGGTTCCTCAATAGGTTCC
TCGAAAGCCTGAAATGACGAGCAATACTTCTCCGGCCCGCTGCCGAGGTA
ACCGTTTTCGTGCCTCCCTTTCGTTAATTTTGATTGATTGAATTGTATAC
CACACGTCGGCAGGTGGGCAGTCCAGATCGTGTTTTGATGTTGTAGTATA
GGGAAAGGGACGGCTTTGCATATAGTATTTGGGGGGGGGGCGCGTGTACA
ATATGTTTTGAGGTATGCGTTTAGTATGCTTTTAGTATGCTTTGAGGCAA
GAAATAAACCGTAAATGAAAAGAGATATTTTATCTACTAGCTTCGTGAAG
GATATATTCGATATTTCGCTGTGTAGTGACAATTCATTCAGTTGCATTCG
GGGATGTAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11335:2601..7461-

>mRNA_H-elongata_contig11335.1078.1 ID=mRNA_H-elongata_contig11335.1078.1|Name=mRNA_H-elongata_contig11335.1078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2580bp|location=Sequence derived from alignment at H-elongata_contig11335:2601..7461- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGTTGGCGGGGCGGGGGGGCAGTTTAAGCGTATGTGACGCTCC
TGAAGCAGAAGCACTGGCAGCTGCCGTAGCATCTGCCGCTGTTGGCACCA
CACCGTCCCCTGCTTCCGAGTTCGGGTTTTCGAAGGCGGCTGACGACCAA
CCCTCCTCCGACCAGGACGGAGGCCCAATGAACTCTCTTTGCGGAGGACC
TCAAGTGGCTGGCGCTGCCGCACCGGTGGCTTATGGCAAGGATAACGATG
TCGAGGGAAAACTTTTCATTGGCGGAATATCGTGGCAGACAACAGAACAG
GGTCTCAGATGGAGGAGTTGGCGGGGCGGGGGGGCAGTTTAAGCGTATGT
GACGCTCCTGAAGCAGAAGCACTGGCAGCTGCCGTAGCATCTGCCGCTGT
TGGCACCACACCGTCCCCTGCTTCCGAGTTCGGGTTTTCGAAGGCGGCTG
ACGACCAACCCTCCTCCGACCAGGACGGAGGCCCAATGAACTCTCTTTGC
GGAGGACCTCAAGTGGCTGGCGCTGCCGCACCGGTGGCTTATGGCAAGGA
TAACGATGTCGAGGGAAAACTTTTCATTGGCGGAATATCGTGGCAGACAA
CAGAACAGGGTCTCAGAAATCATTTTAGCAAGTACGGCATGGTTGCAAAC
ATCGCGCTCATGAAGGACAAGTACACTGGGCATCCTAGAGGCTTTGGTTT
CATCAAGTTCGAGGATTCCAGAGAAATCATTTTAGCAAGTACGGCATGGT
TGCAAACATCGCGCTCATGAAGGACAAGTACACTGGGCATCCTAGAGGCT
TTGGTTTCATCAAGTTCGAGGATTCCAGAGTTCTCGACGAAATTCTGGCC
TTGGAACACAAGATTGACGGCAAGATTGTGGATGTCAAGCGCGCAGTGCC
CAAGAGCGAAGCACCAGGGCCGGCAGCAAGTTCTCGACGAAATTCTGGCC
TTGGAACACAAGATTGACGGCAAGATTGTGGATGTCAAGCGCGCAGTGCC
CAAGAGCGAAGCACCAGGGCCGGCAGCAAGGCCCAACAGACCATCGGAGT
TCAATAAAATATTCGTGGGCGGCTTGGCCCCGACTGTCATGATGGCAGAG
TTCAGGAAGTATTTCGAGAGGTTTGGTGGCGTAGTGGACGCGGTGGTCAT
GTTCGACAGGCAGACTCAGCGGTCGCGCGGCTTTGGCTTTGTTACTTTTG
TAGAGGAAACCGTTGTACACGATATCATGAGGACCACACACGAGATCAAT
GGCAAGGTTGTTGAAGTTAAACGTGCCGAGCCCAAAGAAAGTCGTCACAA
CCGTGCATCCCGGGATGACATGTCCGGTGGAGCTTCCCCTGGGGTGTGGA
GTGGGGAACCGTCTCCATTTTCAGCACCACGGCGAGCCCAGCCTGTTAGC
CCCGGACGTGGACCAGCAGCTGGCTACGGAATGGGAAACTCATTTGCCTA
CGGAAACAACAGCGCGGCCAACTTCATTGCAGCGAATGTGGCCACATACG
GCCAGACGCCGTACGGATATCCAGCTTACGGTTACAATGCGCAGCTTTAC
CCCGCTCCTACCTTTGGCTCTGGACGCAACGCTGGGACTGCTACCTATAA
CGCCGGGGTTGGGACAGGGACGTCTTACGTAGGACCGCTACCACCTCAAG
TTAACTACGGTCTACAGGGCCAAGAAAGGCAACCTCAATATGCCCAAGCG
GAGTATATCTCTGCCGTCCGACACCAGCAACATGCGCACCACCAGATACA
TGCCCAACAGGCTACCCATCTAGGAGAAGAGACCTACCGTCCTCAGCTCT
ACTAAGCCCAACAGACCATCGGAGTTCAATAAAATATTCGTGGGCGGCTT
GGCCCCGACTGTCATGATGGCAGAGTTCAGGAAGTATTTCGAGAGGTTTG
GTGGCGTAGTGGACGCGGTGGTCATGTTCGACAGGCAGACTCAGCGGTCG
CGCGGCTTTGGCTTTGTTACTTTTGTAGAGGAAACCGTTGTACACGATAT
CATGAGGACCACACACGAGATCAATGGCAAGGTTGTTGAAGTTAAACGTG
CCGAGCCCAAAGAAAGTCGTCACAACCGTGCATCCCGGGATGACATGTCC
GGTGGAGCTTCCCCTGGGGTGTGGAGTGGGGAACCGTCTCCATTTTCAGC
ACCACGGCGAGCCCAGCCTGTTAGCCCCGGACGTGGACCAGCAGCTGGCT
ACGGAATGGGAAACTCATTTGCCTACGGAAACAACAGCGCGGCCAACTTC
ATTGCAGCGAATGTGGCCACATACGGCCAGACGCCGTACGGATATCCAGC
TTACGGTTACAATGCGCAGCTTTACCCCGCTCCTACCTTTGGCTCTGGAC
GCAACGCTGGGACTGCTACCTATAACGCCGGGGTTGGGACAGGGACGTCT
TACGTAGGACCGCTACCACCTCAAGTTAACTACGGTCTACAGGGCCAAGA
AAGGCAACCTCAATATGCCCAAGCGGAGTATATCTCTGCCGTCCGACACC
AGCAACATGCGCACCACCAGATACATGCCCAACAGGCTACCCATCTAGGA
GAAGAGACCTACCGTCCTCAGCTCTACTAA
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