mRNA_H-elongata_contig113278.1072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113278.1072.1
Unique NamemRNA_H-elongata_contig113278.1072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113278.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113278contigH-elongata_contig113278:1229..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size878
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113278.1072.1prot_H-elongata_contig113278.1072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113278 1317..1892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.1108544-UTR-H-elongata_contig113278:1228..13161622929653.1108544-UTR-H-elongata_contig113278:1228..1316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113278 1229..1316 +
1691679106.704851-UTR-H-elongata_contig113278:1228..13161691679106.704851-UTR-H-elongata_contig113278:1228..1316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113278 1229..1316 +
1622929653.1593454-UTR-H-elongata_contig113278:1892..21061622929653.1593454-UTR-H-elongata_contig113278:1892..2106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113278 1893..2106 +
1691679106.7282457-UTR-H-elongata_contig113278:1892..21061691679106.7282457-UTR-H-elongata_contig113278:1892..2106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113278 1893..2106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.142243-CDS-H-elongata_contig113278:1316..18921622929653.142243-CDS-H-elongata_contig113278:1316..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113278 1317..1892 +
1691679106.716531-CDS-H-elongata_contig113278:1316..18921691679106.716531-CDS-H-elongata_contig113278:1316..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113278 1317..1892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113278.1072.1

>prot_H-elongata_contig113278.1072.1 ID=prot_H-elongata_contig113278.1072.1|Name=mRNA_H-elongata_contig113278.1072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MTDAGGTEKATRCRWTPTTKALARMRRTADPNRCIVSGAQRGPRRNAQQT
VKKIQGSSPARVGNGTASATVVVVQVGCSEHGKEPPTKAVARCVRLLTRG
IAPAKQRLVERTGAPKEASRRSQSRFAICGGGWQKYLAPRRPRRTARYRS
VLAFRPRPALESTRRLLGGGGTRLSRGVVRRVKVTWAPSVC*
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mRNA from alignment at H-elongata_contig113278:1229..2106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113278.1072.1 ID=mRNA_H-elongata_contig113278.1072.1|Name=mRNA_H-elongata_contig113278.1072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=878bp|location=Sequence derived from alignment at H-elongata_contig113278:1229..2106+ (Himanthalia elongata Himel1 dioecious)
CCACTCGCTCCTTCGAGCACAGATTCGATCAGGCTTCCGTGGACGGCGCA
CGGGGCATCAGCAACCGCCTCTTCTCCGGCTGAGGACGATGACAGACGCT
GGGGGGACCGAGAAAGCAACGCGGTGCCGATGGACTCCCACGACGAAGGC
ACTCGCCAGGATGCGACGCACGGCAGACCCGAACCGGTGCATTGTTTCGG
GGGCACAAAGAGGACCCCGACGGAACGCGCAACAAACGGTCAAGAAGATC
CAAGGGTCGTCTCCGGCGAGGGTGGGGAATGGGACCGCGTCGGCGACAGT
GGTGGTCGTTCAAGTTGGTTGCAGCGAGCACGGGAAGGAGCCTCCGACGA
AGGCGGTGGCGCGATGCGTACGGCTACTAACACGCGGAATCGCACCGGCA
AAGCAAAGGCTCGTCGAACGTACGGGCGCTCCTAAGGAGGCGTCGCGGCG
CAGTCAGTCGCGATTTGCAATTTGCGGTGGCGGGTGGCAGAAATATCTTG
CCCCGCGGCGGCCGCGACGAACGGCAAGATACAGAAGCGTGCTAGCCTTT
CGTCCGCGCCCCGCGTTGGAATCAACCCGGCGTTTGCTCGGGGGGGGGGG
GACCCGCTTGTCCCGTGGTGTCGTTCGGCGTGTGAAAGTAACGTGGGCGC
CTTCGGTCTGTTAGTCTTTCGTGCCCGTGCGGTGTGTTCGCGAAATTGCG
CCCGTAGGGTTAGCGTCTGTGTACTTGCAAGAGCGCTAGTCAATAGTCAA
GCTTTGTTCATTATAATCAAACTCCTCGCGCGTTATGTCAGGCAGGATTT
GGTCGATTTTCCTGGAATGAGTACCATATCTATATCATCTCATATTCTGT
GTGTGCGTTATCATCTCATATATTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig113278:1229..2106+

>mRNA_H-elongata_contig113278.1072.1 ID=mRNA_H-elongata_contig113278.1072.1|Name=mRNA_H-elongata_contig113278.1072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig113278:1229..2106+ (Himanthalia elongata Himel1 dioecious)
ATGACAGACGCTGGGGGGACCGAGAAAGCAACGCGGTGCCGATGGACTCC
CACGACGAAGGCACTCGCCAGGATGCGACGCACGGCAGACCCGAACCGGT
GCATTGTTTCGGGGGCACAAAGAGGACCCCGACGGAACGCGCAACAAACG
GTCAAGAAGATCCAAGGGTCGTCTCCGGCGAGGGTGGGGAATGGGACCGC
GTCGGCGACAGTGGTGGTCGTTCAAGTTGGTTGCAGCGAGCACGGGAAGG
AGCCTCCGACGAAGGCGGTGGCGCGATGCGTACGGCTACTAACACGCGGA
ATCGCACCGGCAAAGCAAAGGCTCGTCGAACGTACGGGCGCTCCTAAGGA
GGCGTCGCGGCGCAGTCAGTCGCGATTTGCAATTTGCGGTGGCGGGTGGC
AGAAATATCTTGCCCCGCGGCGGCCGCGACGAACGGCAAGATACAGAAGC
GTGCTAGCCTTTCGTCCGCGCCCCGCGTTGGAATCAACCCGGCGTTTGCT
CGGGGGGGGGGGGACCCGCTTGTCCCGTGGTGTCGTTCGGCGTGTGAAAG
TAACGTGGGCGCCTTCGGTCTGTTAGATGACAGACGCTGGGGGGACCGAG
AAAGCAACGCGGTGCCGATGGACTCCCACGACGAAGGCACTCGCCAGGAT
GCGACGCACGGCAGACCCGAACCGGTGCATTGTTTCGGGGGCACAAAGAG
GACCCCGACGGAACGCGCAACAAACGGTCAAGAAGATCCAAGGGTCGTCT
CCGGCGAGGGTGGGGAATGGGACCGCGTCGGCGACAGTGGTGGTCGTTCA
AGTTGGTTGCAGCGAGCACGGGAAGGAGCCTCCGACGAAGGCGGTGGCGC
GATGCGTACGGCTACTAACACGCGGAATCGCACCGGCAAAGCAAAGGCTC
GTCGAACGTACGGGCGCTCCTAAGGAGGCGTCGCGGCGCAGTCAGTCGCG
ATTTGCAATTTGCGGTGGCGGGTGGCAGAAATATCTTGCCCCGCGGCGGC
CGCGACGAACGGCAAGATACAGAAGCGTGCTAGCCTTTCGTCCGCGCCCC
GCGTTGGAATCAACCCGGCGTTTGCTCGGGGGGGGGGGGACCCGCTTGTC
CCGTGGTGTCGTTCGGCGTGTGAAAGTAACGTGGGCGCCTTCGGTCTGTT
AG
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