mRNA_H-elongata_contig11314.1069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11314.1069.1
Unique NamemRNA_H-elongata_contig11314.1069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Match: A0A6H5LP94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP94_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.980e-43
Identity = 103/247 (41.70%), Postives = 136/247 (55.06%), Query Frame = 1 
Query:    4 EMTSKDLATRNT-VAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKESNRGDQARLGR----LSRVAG---CG-ASYDDADCRDETVSKDTTRSVV--VTHRCLCDLLKGLMSDVYNVPEQP-ELCPVDLPILF------------STLGQNRPTAGDMAAIN-----RGDASGEESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLADALGIPCACASPGVVPR 657
            ++   D A  N  V FL LGS+GDCLPLCALA SL + L     + R ++++    D+  L +       V G   C  +S DD D +      + + S V  VTHRC CDLL GLM   ++V + P  LCPVD+P+LF            ++ GQ   T+     +N     RG  +  ++   +   + GDEE  V  ELD CM VL+ ++P  LVFNLYS+FGYHLADALGIPC CASPGV PR
Sbjct:    9 DLQKADTADPNVEVVFLALGSIGDCLPLCALASSLGS-LEVDSDRSRRQDEQGVHEDEGALQQSQVDADMVDGAHRCAHSSGDDRDFKRRRKRSNASSSAVCVVTHRCHCDLLGGLMEGTFDVSQPPPRLCPVDVPVLFGVSNNDDGEDASASAGQLGETSEAQQRVNANGATRGQRTARDNDLAVAAADVGDEEGAVREELDACMSVLKDLKPNLLVFNLYSAFGYHLADALGIPCVCASPGVAPR 254
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BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Match: D8LE16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE16_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.060e-27
Identity = 85/238 (35.71%), Postives = 109/238 (45.80%), Query Frame = 1 
Query:    1 FEMTSKDLATRNT-VAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKESNRGDQARLGRLSRVAGCGASYDDADCRDET-VSKDTTRSVVVTHRCLCDLLKGLMSDVYNVPEQP-ELCPVDLPILFST---------------LGQNRPTAGDMAAIN--RGDASGEESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLADALGIPCACASPGVVP 654
            F++   D A  N  V FL LGS+GDCLPLCALA SL                                A  G  +  +  +DE  V +D                +GLM   ++V + P  L PVD+P+LF                 LG+ R     + A    RG  +  +    +   + GDEE  +  ELD CM VL  ++P+ LVFNLYS+FGYHLADALGIPC CASPGV P
Sbjct:    8 FDLLKADTADSNVDVVFLALGSIGDCLPLCALASSL--------------------------------ASLGVDWGRSRRQDEQGVHED----------------EGLMEGTFDVSQPPPRLYPVDVPVLFGVSNNDDAEDASASAGRLGERREAQQRVNANGAARGQRTARDEDLVVAAADVGDEEGAIREELDACMSVLEDLKPKLLVFNLYSAFGYHLADALGIPCVCASPGVAP 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LP94_9PHAE6.980e-4341.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE16_ECTSI2.060e-2735.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11314contigH-elongata_contig11314:522..5947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size660
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11314.1069.1prot_H-elongata_contig11314.1069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11314 522..5941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.712963-CDS-H-elongata_contig11314:521..6201622929652.712963-CDS-H-elongata_contig11314:521..620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 522..620 -
1691679106.5226388-CDS-H-elongata_contig11314:521..6201691679106.5226388-CDS-H-elongata_contig11314:521..620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 522..620 -
1622929652.764549-CDS-H-elongata_contig11314:930..11781622929652.764549-CDS-H-elongata_contig11314:930..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 931..1178 -
1691679106.5304866-CDS-H-elongata_contig11314:930..11781691679106.5304866-CDS-H-elongata_contig11314:930..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 931..1178 -
1622929652.7815492-CDS-H-elongata_contig11314:5634..59411622929652.7815492-CDS-H-elongata_contig11314:5634..5941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 5635..5941 -
1691679106.539992-CDS-H-elongata_contig11314:5634..59411691679106.539992-CDS-H-elongata_contig11314:5634..5941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11314 5635..5941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.792774-UTR-H-elongata_contig11314:5941..59471622929652.792774-UTR-H-elongata_contig11314:5941..5947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11314 5942..5947 -
1691679106.556266-UTR-H-elongata_contig11314:5941..59471691679106.556266-UTR-H-elongata_contig11314:5941..5947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11314 5942..5947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11314.1069.1

>prot_H-elongata_contig11314.1069.1 ID=prot_H-elongata_contig11314.1069.1|Name=mRNA_H-elongata_contig11314.1069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MTSKDLATRNTVAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKE
SNRGDQARLGRLSRVAGCGASYDDADCRDETVSKDTTRSVVVTHRCLCDL
LKGLMSDVYNVPEQPELCPVDLPILFSTLGQNRPTAGDMAAINRGDASGE
ESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLA
DALGIPCACASPGVVPR*
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mRNA from alignment at H-elongata_contig11314:522..5947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11314.1069.1 ID=mRNA_H-elongata_contig11314.1069.1|Name=mRNA_H-elongata_contig11314.1069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5426bp|location=Sequence derived from alignment at H-elongata_contig11314:522..5947- (Himanthalia elongata Himel1 dioecious)
TTTGAGATGACCTCGAAGGATTTGGCCACTAGGAACACAGTTGCGTTTTT
GTGTCTAGGATCGCTCGGAGACTGCCTACCTCTCTGCGCACTGGCCGTAT
CCCTTTCAACTCACCTACGATATCTACATCAAAAGGATCGAAGCAAAGAG
AAAGAAAGCAATCGTGGAGATCAGGCGCGTCTTGGTCGACTTTCTAGAGT
CGCGGGGTGTGGCGCTAGCTATGATGATGCTGATTGTCGTGACGAGACTG
TCAGTAAAGACACGACGAGGTCGGTCGTAGTAACGCATCGTTGCCTCTGC
GATCTGCTCAAAGGTGCGCACAGTAGTAACGGGCATCGTGGTTGGAGGCC
CTATCCGCGTCAGAAAATTGATGGAAATACTTACAAAGCAATTACTCTGT
TTCCGCGTACAGAAAGATGTGCGATTAGTAATGCCTTCAAGTGTATCGAG
CTAGTAGTGTACCCAACGTTGATTTTTCAAATTTTCAAATTGATTCCGAC
CGCGTTGCTACTTTATACAGTACCGTACATTACTTCGAATTACTATTCAA
ATCACTCCAGCACGTAAATAACAGTTGGTCCCCTGGATGGTGAGAGCATG
CTCGGAGGGTTGGAACGAGTTCAATTTTTTTTAATAATAATTCTCCCCAC
AGTTCGATTACTGTACTAAATTAGTTCTCACCATTTTTATCGAAACTGCG
AGATGGTCAAAAATAGGAATTTGGGATTGCACATTAGCAGATTCTTGCTT
CAGACTTATGTTTCTAGAAAACTAAATTATACTACACCAGGACGGTCAAG
GTCAATACACTATTTTGAAGTATATTCGAACGTCATTCGTCTGTGTGTGT
GTGTATTTATGAAATTGCACATAACCGCGCAATCCGGCCCTGTCGTCCTA
GTCCTTCTATGCCACTCGTATTGATCCTCCTAGGGGGGATCAACGTGTGT
GTGTGTGTGTATTTATTAAGTTGCACATAACCGCGCAATCCGGCCCCTCT
GTCATGCTAGCTCTTCAGGCTACTCTCTATTAATGGCATTGATCCTTCCA
ATGGAGACATACTATCGCTTTATTTCGTATCTAAACAGTCAATACCTTGC
GCTTCCCTCTCTACTTCCTTGTCAACCATATACCAAATAGCTTCGGTCGG
CCCCTAATGGACCAACTCTCTCCCGTCTGCTTTTTTTCCCCCTGCTACCC
AAATCTCCTCCGTTTTCCCCTGCCTTGCGCTTCTTGACCCTCCTTTCCCC
TCCCCGGTCCCGCCCCTTGCTTCCCATCCCCGGGCTCTGGATATTAGCAT
GACACGACGTTCACGCTGAGGCGTCGGTTCCTGCGGCTGTGGATGAAGAT
TACCCGTTGGCAACACCCCCTCTATCGCGTCTTCCTCCCCACCTGTACTA
CTCCTGAGTTGTCTCTTCCATCTACCCCCATCTCCGTTCTCATCCCCATA
CCCGCCCCTGCCTCTGTCCCCATCTCCTCCCCATTGCCAGACTCCGTCCC
CGTTCTCATCCCCGATCCCCTTTCCATCCCCTCTCCAGTCCCCGTCCTTA
TCTCCGTCTCCATTCCCATCCCCGTTCTCGCCCCCTATCCCCTATCCCCT
ATCCCCTCCCCATTTACATCCCCATCACCGTCCGAGTCCTTATCCCCATC
CCCGTCCCCGCCCCCGTCTTTGTTCTCATCCACTTTCCCATTTCCGTCCC
CCTCCCCGTCCTCGGTTCTGTCCCCATTTCCAAACCCATTCCTATCCCTG
TCACGACGTGAGGATGCCGAGTATTGCGAACGAATGTTTGGGCTGTATGT
GAGGGCCACCCCCTGTCTGCAGAGGTAATGTCGCGTGCGGAAAGACAGTG
CCTGCTGTAAGACGAAATAAAATCGCCGCCTAAGACGTGCTATTTCTGTC
CCCTCCGCCAGACGCCTTGACTGCTCGGAGTGGAATTCTGAGTTGTTCTT
CGTTCGTCTGATGGCTAGCTCCTTGATGAGGGCATGTTCTTCTGGACCAA
CCTCACCACACGTCGACAGAGCAAGATGAAGGAGGGAGTAGGTAGCGAGG
AACGAGTCCCGATACTTGTTGTTCATCCGCTCAACTGCGTCGGCGAGGTG
TTTTCCGGTCTCGCGTGCTGCGTTTTCGAGGTTGGTGCTGACACAAGGCT
TGACAATGGTCAGATCAAGTAGTAGCGCCTTGTCCTTGCGTCGGGGGTCA
CTGTAGAAAAGTGCCCCCGCTTCCGTAGTAATGTCCATCCTCAGGGGGTT
GTGTCCAATCTGTTGTCCGCTCTCTGTTGGAACGGCCATGTGTCTTTGAT
GACACACTGAACCTTGCTCTCGCGAAGAGACCTAGCTACAGCGTGGTGAA
GCACTCGATTGTGAGTGAGGGAGCTACATTCCGTCTTTGTGCACGAGATA
GCGCGGAGACGGGTGGTTTATTTGCGACAACCTCTACCGTGGCACATCCC
GCCAACTGGTTCCACTGCATCGTGTGATCCTAGGCTCCTGCCAAAGATTT
CTCTCTACAGGAAGCTCTCCATCGTATCCTCTTAGGAGACCCCCAAGCAT
TCCACAAATACCATGGCGTCCTTCTCCCGCGCCCCCCTAAACCTGACCAT
CGCTCTCTTCGACGTATTATTATACATAACCGCGCAATCCGGCTTTGTCA
TGCTAGCTCTTCTAGGCTACTATCTCTCGCATTGATCCTCCCAAAAGGGA
ATTAAATCATATTTGCTACAAAAACCTCTTATCAGACGTGACAAAGGAGA
CATCACATCCAACCTCTCACGATGTTAAGAATGCGTGGATGTTCTGAGGG
TTTTAATGGTTTCATATGTTCTTCAAGAAAAACTCCTCTTCCGGCCTAAC
CACCCGGGAACAGTTAAAATCATTACGGTATCATATGCCCTTCGGTACGA
AATATTAAATATCTACTGTCTCAAGTGATCCTTGTTGGTCAGAAATCTGA
AATACAAGCTACAGCGACCGCTGTCGTGCTGTTCGTTCATTTTACCAAGA
GACGATATCACAAAGTGCAAGTCTCAAAATATATCGGTAGGCTATACGTA
GACAAACTTGTTCGACACTCAACAAATAAGAACAACGTACCGATGTCAAA
CAGTAAACCAAGCCTCCCTTTTTGCATCCAGTAACATTCCGATCTAATCA
GGATCCTCCTTGATAACGTCCCTATATTCTGCCCCTTCGCCGCTTCTCCA
AGCTGGCTCTCTCTGATGATGACGTCATAATCAGACCGAGGCCATATATC
ACCTTTCTCTCCAGAAACCTCCCGGTTCGCGCTGGTAAATGCTCGCGTAG
AAAGGTTCAGGACTCCCTTGGCTCGTCGACGATCTATGATCAATAATTGA
CCTTCGATGATCGATGACCGAGCTGCCTTCCAACGTTGTCGAATCTGGTG
CTTACTCACCCGATAGTACGCGCAGTAGCAGCAGTACGCTCGCGCGTGCT
GTGGTAACCTATCAAGATTTCCGCGACAGTGACGTCACCAGCTGTAGCTA
TACCTGACGAATTGCATTTGAATTTATATGGGGATTGTAAGCGGTGAACA
CCATTCCTGAAGACTATATCTTGATCCAACCAAACTGTCACCGCTTAAAA
TAGATGCAATAAATACAATAGGCTTAATCGGGTAGAGAGTATATTTGCAT
CACATTTTGAGGGTGAATCCAGCGTCCAGTCCTATACTCCCCCCCCCCCC
AATTCGTAGTACAGTACCCCGAACCAGGTGTCGAAGAGGAGAGGACACGA
GGACATATGTTGTATTAATTTATCTAGCACATAGCAAATATCTAACAAGA
TACAGTATATCCAAGGCACCAGACAACTCTGGAAACAGACCGACTCTTTT
TTTTCAGGAAGGTTTCTTGGTTCTCTCGCTTGATCCAAATTTTCCGTAAA
TCGATGATGTTTTTTTTTCTCTCTTTGCACTACCGTCCTAAGAAATAAAG
GAAGGCAAATTTGTGTGAAAGTGGGCCAAAAATCTCGGCATTTAAGTTTT
TTCCATCTTTTTCAACGAGAAAACCGATAAAAATATAATAAAATAGTTAT
GTTTTGTCCTCACTTCTTGTCGATGGGTTATATATACTATTAACAATAGT
TTATTATACTCTAAATGACTTATGATTAACACCAATCCCATCCATCATCC
TTCCCGTGGTTTTCAGGGGCCATTACCCGTCTCTCCCCGGTTCACGCTCG
TTCACGCCTCCATACCAATATTATTGTTATTATCATTATTATCGCGATGC
AAGCTCAGCACTCCTAAACCTTGTGGACCAATGGTATGAACATTGCTTAC
TCACGCCCTCACGCTTTCCGCTAGAACAAACAGTAGTATTAGTAGAAGTA
GTATTAGCAATAGTAGTATTAGTAGTATTAATATTAGCCCCCCTGCCCGA
GATTCCAGCTCAATACTGCTCTACACACTGTGCATACAGGTTTAAAACGT
TGGATTAACACCACATGGGTCATAATAGAGCTAATTATACCCCGAGTACG
TTGTACATGCTATAACATACTACATATATTTACATGTACAATGATGCTAT
ATACTTTAAATATTATTATACATGATACATACAACGTGGATTAGCACCAC
ATGGGCCTAGTAATAAAGATAACTATACTTCGAGTACGTTGTTTCGTGGT
ATGCTATATTTGTACCCATACGACAGTCGAAATATTTCGTGCGTGGATGG
AACGTCAGCGCGTGCTTTGGTGGAGGCGTTTCTCTCAACGTGGTTCGTAT
AATGCAATGCCGCGCGCAGGTCTCATGTCTGACGTGTACAACGTCCCGGA
ACAACCGGAGCTTTGCCCCGTAGACTTACCTATCCTTTTCAGCACTCTAG
GGCAGAATCGCCCCACGGCGGGAGACATGGCTGCCATCAATCGTGGCGAT
GCATCGGGAGAAGAGAGCGGGGGAGGGATCCGCGGCGGCGAGGCGGGAGA
TGAAGAAGTCGGAGTTTCTAGAGAGCTTGACGTTTGCATGGAGGTCCTCA
GGGGCATTCGACCGGAGGTGATCGTTGCGGGGCTGCTGCCCCCCGTTCAT
ATGGAACAATAGAGAACGCTGCCATGTAGATACCTAGATACAGAACGTCA
CCATGTAGTAGCTCTAGTTCTAGCTTTAGCTCTACAAATGCGTAGCATTT
ACATATTTTCTTCGTTTAGAGCGTTTAGAGTGTAGACATCGTGAGCTGCT
AGAAACACCCCCACGGCCCATCAGGAGCGGATGATGCCGGCAAAGGAGGA
GGAGGGATGTCCTGAAAAATTACCCGCTGCTTTCCTTATCCTTCTTCTAC
ATTTCACCCTCGACCGAAAACAACCAGGCGCTCGTATTCAACCTGTACAG
TTCGTTCGGCTATCACCTGGCTGACGCCCTCGGAATTCCGTGTGCGTGCG
CGTCTCCGGGTGTGGTCCCCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig11314:522..5947-

>mRNA_H-elongata_contig11314.1069.1 ID=mRNA_H-elongata_contig11314.1069.1|Name=mRNA_H-elongata_contig11314.1069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig11314:522..5947- (Himanthalia elongata Himel1 dioecious)
ATGACCTCGAAGGATTTGGCCACTAGGAACACAGTTGCGTTTTTGTGTCT
AGGATCGCTCGGAGACTGCCTACCTCTCTGCGCACTGGCCGTATCCCTTT
CAACTCACCTACGATATCTACATCAAAAGGATCGAAGCAAAGAGAAAGAA
AGCAATCGTGGAGATCAGGCGCGTCTTGGTCGACTTTCTAGAGTCGCGGG
GTGTGGCGCTAGCTATGATGATGCTGATTGTCGTGACGAGACTGTCAGTA
AAGACACGACGAGGTCGGTCGTAGTAACGCATCGTTGCCTCTGCGATCTG
CTCAAAGATGACCTCGAAGGATTTGGCCACTAGGAACACAGTTGCGTTTT
TGTGTCTAGGATCGCTCGGAGACTGCCTACCTCTCTGCGCACTGGCCGTA
TCCCTTTCAACTCACCTACGATATCTACATCAAAAGGATCGAAGCAAAGA
GAAAGAAAGCAATCGTGGAGATCAGGCGCGTCTTGGTCGACTTTCTAGAG
TCGCGGGGTGTGGCGCTAGCTATGATGATGCTGATTGTCGTGACGAGACT
GTCAGTAAAGACACGACGAGGTCGGTCGTAGTAACGCATCGTTGCCTCTG
CGATCTGCTCAAAGGTCTCATGTCTGACGTGTACAACGTCCCGGAACAAC
CGGAGCTTTGCCCCGTAGACTTACCTATCCTTTTCAGCACTCTAGGGCAG
AATCGCCCCACGGCGGGAGACATGGCTGCCATCAATCGTGGCGATGCATC
GGGAGAAGAGAGCGGGGGAGGGATCCGCGGCGGCGAGGCGGGAGATGAAG
AAGTCGGAGTTTCTAGAGAGCTTGACGTTTGCATGGAGGTCCTCAGGGGC
ATTCGACCGGAGGTCTCATGTCTGACGTGTACAACGTCCCGGAACAACCG
GAGCTTTGCCCCGTAGACTTACCTATCCTTTTCAGCACTCTAGGGCAGAA
TCGCCCCACGGCGGGAGACATGGCTGCCATCAATCGTGGCGATGCATCGG
GAGAAGAGAGCGGGGGAGGGATCCGCGGCGGCGAGGCGGGAGATGAAGAA
GTCGGAGTTTCTAGAGAGCTTGACGTTTGCATGGAGGTCCTCAGGGGCAT
TCGACCGGAGGCGCTCGTATTCAACCTGTACAGTTCGTTCGGCTATCACC
TGGCTGACGCCCTCGGAATTCCGTGTGCGTGCGCGTCTCCGGGTGTGGTC
CCCAGGTAAGCGCTCGTATTCAACCTGTACAGTTCGTTCGGCTATCACCT
GGCTGACGCCCTCGGAATTCCGTGTGCGTGCGCGTCTCCGGGTGTGGTCC
CCAGGTAA
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