prot_H-elongata_contig11314.1069.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11314.1069.1
Unique Name	prot_H-elongata_contig11314.1069.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	218

Homology

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BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Match: A0A6H5LP94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP94_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.830e-42
Identity = 103/246 (41.87%), Postives = 135/246 (54.88%), Query Frame = 0

Query:    1 MTSKDLATRNT-VAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKESNRGDQARLGR----LSRVAG---CG-ASYDDADCRDETVSKDTTRSVV--VTHRCLCDLLKGLMSDVYNVPEQP-ELCPVDLPILF------------STLGQNRPTAGDMAAIN-----RGDASGEESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLADALGIPCACASPGVVPR 217
            +   D A  N  V FL LGS+GDCLPLCALA SL + L     + R ++++    D+  L +       V G   C  +S DD D +      + + S V  VTHRC CDLL GLM   ++V + P  LCPVD+P+LF            ++ GQ   T+     +N     RG  +  ++   +   + GDEE  V  ELD CM VL+ ++P  LVFNLYS+FGYHLADALGIPC CASPGV PR
Sbjct:   10 LQKADTADPNVEVVFLALGSIGDCLPLCALASSLGS-LEVDSDRSRRQDEQGVHEDEGALQQSQVDADMVDGAHRCAHSSGDDRDFKRRRKRSNASSSAVCVVTHRCHCDLLGGLMEGTFDVSQPPPRLCPVDVPVLFGVSNNDDGEDASASAGQLGETSEAQQRVNANGATRGQRTARDNDLAVAAADVGDEEGAVREELDACMSVLKDLKPNLLVFNLYSAFGYHLADALGIPCVCASPGVAPR 254

[Close]

BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Match: D8LE16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE16_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.080e-26
Identity = 84/236 (35.59%), Postives = 107/236 (45.34%), Query Frame = 0

Query:    1 MTSKDLATRNT-VAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKESNRGDQARLGRLSRVAGCGASYDDADCRDET-VSKDTTRSVVVTHRCLCDLLKGLMSDVYNVPEQP-ELCPVDLPILFST---------------LGQNRPTAGDMAAIN--RGDASGEESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLADALGIPCACASPGVVP 216
            +   D A  N  V FL LGS+GDCLPLCALA SL                                A  G  +  +  +DE  V +D                +GLM   ++V + P  L PVD+P+LF                 LG+ R     + A    RG  +  +    +   + GDEE  +  ELD CM VL  ++P+ LVFNLYS+FGYHLADALGIPC CASPGV P
Sbjct:   10 LLKADTADSNVDVVFLALGSIGDCLPLCALASSL--------------------------------ASLGVDWGRSRRQDEQGVHED----------------EGLMEGTFDVSQPPPRLYPVDVPVLFGVSNNDDAEDASASAGRLGERREAQQRVNANGAARGQRTARDEDLVVAAADVGDEEGAIREELDACMSVLEDLKPKLLVFNLYSAFGYHLADALGIPCVCASPGVAP 197

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11314.1069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LP94_9PHAE	1.830e-42	41.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LE16_ECTSI	4.080e-26	35.59	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 38..217
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..37
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 12..34

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11314	contig	H-elongata_contig11314:522..5941 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11314.1069.1	mRNA_H-elongata_contig11314.1069.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11314 522..5947 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11314.1069.1 ID=prot_H-elongata_contig11314.1069.1|Name=mRNA_H-elongata_contig11314.1069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MTSKDLATRNTVAFLCLGSLGDCLPLCALAVSLSTHLRYLHQKDRSKEKE
SNRGDQARLGRLSRVAGCGASYDDADCRDETVSKDTTRSVVVTHRCLCDL
LKGLMSDVYNVPEQPELCPVDLPILFSTLGQNRPTAGDMAAINRGDASGE
ESGGGIRGGEAGDEEVGVSRELDVCMEVLRGIRPEALVFNLYSSFGYHLA
DALGIPCACASPGVVPR*