mRNA_H-elongata_contig11311.1067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11311.1067.1
Unique NamemRNA_H-elongata_contig11311.1067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11311.1067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11311contigH-elongata_contig11311:7229..7756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size530
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.3671374-UTR-H-elongata_contig11311:7228..73421622929652.3671374-UTR-H-elongata_contig11311:7228..7342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11311 7229..7342 +
1691679106.3580065-UTR-H-elongata_contig11311:7228..73421691679106.3580065-UTR-H-elongata_contig11311:7228..7342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11311 7229..7342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.3815215-CDS-H-elongata_contig11311:7342..77561622929652.3815215-CDS-H-elongata_contig11311:7342..7756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11311 7343..7756 +
1691679106.365667-CDS-H-elongata_contig11311:7342..77561691679106.365667-CDS-H-elongata_contig11311:7342..7756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11311 7343..7756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11311.1067.1prot_H-elongata_contig11311.1067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11311 7343..7756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11311.1067.1

>prot_H-elongata_contig11311.1067.1 ID=prot_H-elongata_contig11311.1067.1|Name=mRNA_H-elongata_contig11311.1067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MAFSCGEVRCDNIPVRNILILLTVLMYVLSVLVALIRTARRRASSPLPLV
RCKTCFSRHSLLIAVGNTRVRSVRASVSPSLRGALPQSARGATTLQSPPQ
PNNQTRGSHYSSEFPLGPLGSGKKTAQPLPPQRSSPPP
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mRNA from alignment at H-elongata_contig11311:7229..7756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11311.1067.1 ID=mRNA_H-elongata_contig11311.1067.1|Name=mRNA_H-elongata_contig11311.1067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig11311:7229..7756+ (Himanthalia elongata Himel1 dioecious)
CCTCGGTAAAATGTGTTATTTGACTTTTAAAGCAATAGCTGTTACCAGGG
CAGACGAAACCTCTGCATGGCAAAGGAACAAAGTCGCAGGAAACGAAACG
CGCTTTGATAGAGTATGGCGTTTTCGTGTGGTGAGGTGCGGTGCGATAAT
ATACCTGTACGGAATATACTAATACTATTAACAGTATTGATGTATGTCTT
GTCCGTACTTGTAGCACTTATCCGTACAGCTCGCAGAAGAGCAAGCAGCC
CTCTCCCTCTTGTGCGATGCAAGACATGCTTTTCGCGACACTCCCTGCTG
ATAGCGGTTGGGAACACTCGAGTGCGATCCGTCCGTGCGTCCGTCAGTCC
ATCGCTAAGAGGTGCCTTGCCACAGTCCGCACGAGGGGCCACCACTCTTC
AGAGTCCCCCGCAGCCAAACAATCAGACAAGGGGGTCACACTACTCTTCA
GAGTTCCCTCTAGGCCCTCTCGGATCAGGCAAAAAAACAGCGCAACCACT
ACCACCGCAACGCTCCTCCCCACCTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig11311:7229..7756+

>mRNA_H-elongata_contig11311.1067.1 ID=mRNA_H-elongata_contig11311.1067.1|Name=mRNA_H-elongata_contig11311.1067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig11311:7229..7756+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTTTCGTGTGGTGAGGTGCGGTGCGATAATATACCTGTACGGAA
TATACTAATACTATTAACAGTATTGATGTATGTCTTGTCCGTACTTGTAG
CACTTATCCGTACAGCTCGCAGAAGAGCAAGCAGCCCTCTCCCTCTTGTG
CGATGCAAGACATGCTTTTCGCGACACTCCCTGCTGATAGCGGTTGGGAA
CACTCGAGTGCGATCCGTCCGTGCGTCCGTCAGTCCATCGCTAAGAGGTG
CCTTGCCACAGTCCGCACGAGGGGCCACCACTCTTCAGAGTCCCCCGCAG
CCAAACAATCAGACAAGGGGGTCACACTACTCTTCAGAGTTCCCTCTAGG
CCCTCTCGGATCAGGCAAAAAAACAGCGCAACCACTACCACCGCAACGCT
CCTCCCCACCTCCCATGGCGTTTTCGTGTGGTGAGGTGCGGTGCGATAAT
ATACCTGTACGGAATATACTAATACTATTAACAGTATTGATGTATGTCTT
GTCCGTACTTGTAGCACTTATCCGTACAGCTCGCAGAAGAGCAAGCAGCC
CTCTCCCTCTTGTGCGATGCAAGACATGCTTTTCGCGACACTCCCTGCTG
ATAGCGGTTGGGAACACTCGAGTGCGATCCGTCCGTGCGTCCGTCAGTCC
ATCGCTAAGAGGTGCCTTGCCACAGTCCGCACGAGGGGCCACCACTCTTC
AGAGTCCCCCGCAGCCAAACAATCAGACAAGGGGGTCACACTACTCTTCA
GAGTTCCCTCTAGGCCCTCTCGGATCAGGCAAAAAAACAGCGCAACCACT
ACCACCGCAACGCTCCTCCCCACCTCCC
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