mRNA_H-elongata_contig113100.1065.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.800e-23 Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
VDL K V S GGK Y MI KDDF+R AR+Y LR KS+A F FL + P+ +++VRSD G +F G F+++C ++ IKQE +PA S EFNGVA+R
Sbjct: 284 VDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRADGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 6.870e-18 Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 55 MIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
MI KDDF+R +Y LR KS+A F FL + P+ V++VRSD G EF G F+++C ++ IKQE +PA SL++NGVA+R
Sbjct: 1 MIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSLQYNGVAER 85
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438C6Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C6Y4_VITVI) HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13 Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL +S GGK+Y+++ DD+SR+A V LR KSEA F D +Q ++ +RSDRGREF N F C + IK E S + + NGV +R
Sbjct: 578 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 679
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A5ATE2_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ATE2_VITVI) HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13 Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL +S GGK+Y+++ DD+SR+A V LR KSEA F D +Q ++ +RSDRGREF N F C + IK E S + + NGV +R
Sbjct: 175 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSXPRTPQQNGVVER 276
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438EDK4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EDK4_VITVI) HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13 Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL +S GGK+Y+++ DD+SR+A V LR KSEA F D +Q ++ +RSDRGREF N F C + IK E S + + NGV +R
Sbjct: 256 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 357
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO) HSP 1 Score: 73.6 bits (179), Expect = 4.030e-13 Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
VDL +S GGKRY+M+ DD+SR+ V LR KSEA + + K + VRSD GREF N F + C + IK+E S + + NGV +R
Sbjct: 234 VDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFENARFESFCEKNGIKREFSAPKTPQQNGVVER 335
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI001243F70B (receptor-like protein EIX2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001243F70B) HSP 1 Score: 73.2 bits (178), Expect = 5.510e-13 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL +S GGKRY+M+ DDF+R+ V LR KS A ++ LQ K+D +RSD G+EF N + C + I QE S + + NGV +R
Sbjct: 992 LDLIGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSNAPKHIETLCTRLQNEKSLKIDRIRSDHGKEFENSYMESFCTRSGISQEFSTPITPQQNGVLER 1093
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00137765F5 (DDE-type integrase/transposase/recombinase n=1 Tax=Weizmannia coagulans TaxID=1398 RepID=UPI00137765F5) HSP 1 Score: 72.4 bits (176), Expect = 1.020e-12 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL +S GGKRY+M+ DDF+R+ V LR KS+A + LQ K+D +RSD G+EF N + C + I QE S + + NGV +R
Sbjct: 206 LDLMGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSDAPEHIEALCTRLQNEKNLKIDRIRSDHGKEFENSYMESFCLKSGISQEFSAPITPQQNGVVER 307
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A2Z6NJ75_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJ75_TRISU) HSP 1 Score: 72.0 bits (175), Expect = 1.410e-12 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 31 SPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGI---SPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
S GGKRY + DDFSR VY L+ KSEA F +F + S + ++R+DRG EF++ AF+ C+ IK++L+ A + + NGV++R
Sbjct: 497 SNGGKRYFLTLTDDFSRKTWVYILKEKSEAFETFRNFKAMVELKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSER 588
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00064DEEDC (uncharacterized protein LOC105967762 n=3 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DEEDC) HSP 1 Score: 71.2 bits (173), Expect = 2.600e-12 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
+DL V+S GGKRY+ + DDFSRF V +R KS++ F + +S K + +RSD GREF N F+ C + I E S + + NGV +R
Sbjct: 832 MDLMGPMQVESIGGKRYIFVCVDDFSRFTWVEFIREKSDSFDVFKKLCKKVSFEKQQNIVRIRSDHGREFENSLFTNFCEKYGISHEFSAPKTPQQNGVVER 933 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig113100.1065.1 >prot_H-elongata_contig113100.1065.1 ID=prot_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGback to top mRNA from alignment at H-elongata_contig113100:1790..2086- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig113100.1065.1 ID=mRNA_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig113100:1790..2086- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig113100:1790..2086- >mRNA_H-elongata_contig113100.1065.1 ID=mRNA_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig113100:1790..2086- (Himanthalia elongata Himel1 dioecious)back to top |