mRNA_H-elongata_contig11310.1064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11310.1064.1
Unique NamemRNA_H-elongata_contig11310.1064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.330e-23
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVNEGERIVTLTGHGAWWAATVDDFRDDRQ 245
            +HHMDLYRL G  DL V+ I  V ET +CL+EWPDRLGA +P NRLDV + AVNE ERI+   GHGAWW   V+DF++ R+
Sbjct:  157 LHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVVEDFQEARR 237
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: W7T2V7_9STRA (Uncharacterized domain UPF0079, ATPase bacteria n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2V7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.720e-13
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:    3 VHHMDLYRLCG-THDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVNEGERIVTLTGHGAWWAATVDD 227
            VHHMDLYRL   THDL ++ I  VL  G+CLIEWPDRLG   P  R+++ + A NEG R +T+   G  WA  V D
Sbjct:  251 VHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVD 326
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A0H5RBB8_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RBB8_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 2.450e-12
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQV----DAVNEGERIVTLTGHGAWWAATVDDFRD 236
            +HHMDLYRL     +  +D+ +   TGICL+EWP+RLG +KP +RLD+ +    +  N   R + L G G  W+  + +  D
Sbjct:   83 IHHMDLYRLASRDSIGFLDLERSFRTGICLVEWPERLGDNKPAHRLDINISDSFETKNAEVRFLQLQGFGERWSEVLHEMSD 164
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A522WLG5_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522WLG5_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 3.440e-12
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVN-EGERIVTLTGHGAW 206
            + H DLYRL    D   +DI +    GICLIEWPDRLG   P+ RLDV+++  + EGER V LT HG+W
Sbjct:   74 IWHFDLYRLEKPDDALELDIEEAFADGICLIEWPDRLGPHLPKRRLDVRLETGDVEGERRVILTAHGSW 142
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A178MZ72_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MZ72_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 3.980e-12
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDA-VNEGERIVTLTGHGAW 206
            V H DLYRL    D   +DI +    GICLIEWPDRLG   PR RLD+ ++A   E  R  TLTGHG+W
Sbjct:   80 VWHFDLYRLEAPDDALELDIEEAFAEGICLIEWPDRLGPHLPRRRLDLALEAGETETSRRATLTGHGSW 148
[Close]
BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: UPI001EDDFEA7 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDDFEA7)

HSP 1 Score: 73.6 bits (179), Expect = 8.900e-12
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:    9 HMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVNEGERIVTLTGHGAW 206
            H DLYRL  T +LD + + + L+ G  LIEWPDRLGA +P +RLD++++   +G R V L  HG+W
Sbjct:   79 HADLYRLEDTGELDELGLDEALDQGAALIEWPDRLGAWRPADRLDIRLEETGDGGRGVRLAAHGSW 144
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A0G4IYT3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYT3_PLABS)

HSP 1 Score: 71.2 bits (173), Expect = 8.580e-11
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRL--GADKPRNRLDVQVDAVNEGERIVTLTGHGAWWAATVDDF 230
            +HH+DLYRL G  DLD++ + ++ +T ICLIEWPDRL  G + P++RL V++       R  +L   G  WA  + D 
Sbjct:   80 IHHIDLYRLTGKDDLDMLCLERLYQTSICLIEWPDRLHVGNNLPKSRLQVEIADDGADSRTFSLEAVGDRWAPVLADI 157
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BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A1H3IJJ6_9RHOB (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Jannaschia faecimaris TaxID=1244108 RepID=A0A1H3IJJ6_9RHOB)

HSP 1 Score: 69.7 bits (169), Expect = 2.510e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVNEGERIVTLTGHGAWWAATVDDFR 233
            V H DLYRL G   +  + + +  ET +CLIEWPDRLG D+P+  +D+ +DA  +  R +T+TG      AT+D  R
Sbjct:   83 VWHADLYRLSGPDAVTELGLDEAFETALCLIEWPDRLGLDRPQAAIDIMLDATPDDRRRLTITGP----RATMDRLR 155
[Close]
BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A7Y4TCF0_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4TCF0_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 9.390e-10
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVNEGERIVTLTGHGAWWA 212
            + H+DLYR+    +L  + + +VLE G+ +IEWPDR+G   P +RLD+  +AV+   R++ L G G+W A
Sbjct:   87 IAHVDLYRVKALSELRELGLDEVLERGVLVIEWPDRMGLQLPDDRLDIMFEAVDGETRLMKLVGRGSWVA 156
[Close]
BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Match: A0A6J4F978_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4F978_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-9
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:    3 VHHMDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAVN-EGERIVTLTGHGAW 206
            + H DLYRL    D+  +DI +    GICLIEWPDRLG   PR RLDV ++A + EG R   L+  G W
Sbjct:   80 IWHFDLYRLEKPDDVLELDIEEAFADGICLIEWPDRLGPHLPRRRLDVTLEAGDAEGSRRAGLSATGPW 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11310.1064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR96_ECTSI1.330e-2360.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7T2V7_9STRA2.720e-1352.63Uncharacterized domain UPF0079, ATPase bacteria n=... [more]
A0A0H5RBB8_9EUKA2.450e-1239.02Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A522WLG5_9PROT3.440e-1252.17tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A178MZ72_9PROT3.980e-1253.62tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI001EDDFEA78.900e-1248.48tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A0G4IYT3_PLABS8.580e-1142.31Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A1H3IJJ6_9RHOB2.510e-1042.86tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A7Y4TCF0_9PROT9.390e-1041.43tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A6J4F978_9PROT1.390e-949.28tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11310contigH-elongata_contig11310:5690..8666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog2880.D7FR96
KEGG koko:K06925
EggNOG free text desc.Threonylcarbamoyl adenosine biosynthesis protein TsaE
EggNOG OGs2S3MQ@2759,COG0802@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_002340.1
Exons2
Model size1733
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11310.1064.1prot_H-elongata_contig11310.1064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11310 7175..8655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.9250772-UTR-H-elongata_contig11310:5689..71741622929651.9250772-UTR-H-elongata_contig11310:5689..7174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11310 5690..7174 -
1691679106.235903-UTR-H-elongata_contig11310:5689..71741691679106.235903-UTR-H-elongata_contig11310:5689..7174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11310 5690..7174 -
1622929651.9751394-UTR-H-elongata_contig11310:8655..86661622929651.9751394-UTR-H-elongata_contig11310:8655..8666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11310 8656..8666 -
1691679106.2746425-UTR-H-elongata_contig11310:8655..86661691679106.2746425-UTR-H-elongata_contig11310:8655..8666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11310 8656..8666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.9437144-CDS-H-elongata_contig11310:7174..72811622929651.9437144-CDS-H-elongata_contig11310:7174..7281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11310 7175..7281 -
1691679106.250268-CDS-H-elongata_contig11310:7174..72811691679106.250268-CDS-H-elongata_contig11310:7174..7281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11310 7175..7281 -
1622929651.9623945-CDS-H-elongata_contig11310:8525..86551622929651.9623945-CDS-H-elongata_contig11310:8525..8655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11310 8526..8655 -
1691679106.266329-CDS-H-elongata_contig11310:8525..86551691679106.266329-CDS-H-elongata_contig11310:8525..8655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11310 8526..8655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11310.1064.1

>prot_H-elongata_contig11310.1064.1 ID=prot_H-elongata_contig11310.1064.1|Name=mRNA_H-elongata_contig11310.1064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MDLYRLCGTHDLDVIDIRKVLETGICLIEWPDRLGADKPRNRLDVQVDAV
NEGERIVTLTGHGAWWAATVDDFRDDRQ*
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mRNA from alignment at H-elongata_contig11310:5690..8666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11310.1064.1 ID=mRNA_H-elongata_contig11310.1064.1|Name=mRNA_H-elongata_contig11310.1064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2977bp|location=Sequence derived from alignment at H-elongata_contig11310:5690..8666- (Himanthalia elongata Himel1 dioecious)
GAGTTCATCATATGGATCTGTATCGCCTTTGCGGCACTCATGATCTCGAC
GTCATCGATATACGAAAAGTGCTAGAGACTGGCATATGCCTGATCGAATG
GCCCGATCGGTTAGGCGCTGATAAACCTCGGAATCGACTAGGTAAGACCG
AATTTAATTGAGACTAAAAAATAGCCCTCGTAAAAAATAGACCTATCATG
GTCCCATGATCGGCTGATTTTGGAGACCGGATTTTTATTTTCACCCGGAG
CCAGCCGACGTCTAAGTACAGTATTAGAGGAACTGGTCCCCAATTCCTTG
CCACAAGTGGGCCCCTCAAAAATCGTTCGGTACAAGCATGTCGCAGGGTG
TGATACTCCATAAACTAGGTGGTCATATTTCTGGCCTGGGCGACAGCCCA
CTTCGAATATAACTCGGTATTAGTACTGTAGCTACCGATATATCTACCAG
CCGCATGGCAGTTGCGTAGACCCACGTCGCAGAAATTGTAGTAAAGCAAC
AGCCATAGCCACGTTGACATGCAGAAGTAATAATATTTTTGCTGGAGATT
TAATTCACAGGACGACTGTATTGTAAGTTGGTCTTGTACTTGGACTATCC
GCTGAGATGGTGTCGATGGCGGAAATTGTGATGATGAATCTGGAAGTAGT
CACTTTGCTGGTTGCAGCGGTAGCGGCAATGTTGTTGACGTCTAATATTC
GAATATTCGAGTCACAGGACGGCTGTGGTGTGTTGACGTTTGTCTTGGAC
GGCGTTCTCTTCTCCCATCCCGCACCACAACAACGGACAGGACCTCCCCG
CTACGGACAGGGTCTCGCCCCGTCCGCCCCACTTCTAAAACATGTTGCCT
GTCTTTTGTATGTTAGCCTTTCGCGGTGTCGGTATAGCTATTATAGTTAT
AGTAATGCCATGCCTATCCCTCACAGCTAACGTCACAGCTCGCGATGTTG
CGATCTAGGACACGCATCCGTCTTTTGTTCCCACTGTTTTCAATTTCCGA
TTAAATTCCCATTTAAGAGCCCCCCCCTACCGATCCTCATGAAAATCGGA
GCCGACCAGAAATCGACCCCGGATATATTATATTATTCTTAGAAAAGCTG
TTTTTAGTCCTATTAAAGTCTTCCCAAGAGTCAAGGCTAACTTCAACATA
ATATACCTTTGCCATCGTTTCTATTTTTATGTTGCTGCAGTTGTGCTCGA
ATTGACTTCGATCCAGTGGCCGAGAGTCAGGTGTTTTCCGACATCACTTG
CTAGTTGTGGAGTAGCTCTTGAACAACCCGCAAACAACGGTGTGTCTTTA
TCGCCCCCATGCGGCATGGAAATATTCTAAAACCATGCAACTTACCAGCA
CAACGTAACCGTACAACGCCGATTCACTCGCACAGATGTTCAAGTGGATG
CTGTCAACGAAGGCGAACGAATCGTAACTCTTACTGGGCACGGCGCTTGG
TGGGCGGCGACTGTAGATGATTTCAGGGACGACCGACAATGATTAGCTTG
GAAGCGTATTTGAATTGTTCCTAGTACACCGTGCATATTAGGACGAGTTG
TCACGTGGCCTTGCTCTGTGACTGATTCACCATAGCCGGAAACATTCCCA
GAGTCAAATAAAAAATAATAAGGGAGGACATTTGCGATTGTATTTTTCTT
CGAAGAAAATTCATTTCGTATGCATCTTGAAATCGTTAATTTGAGACCGT
GTCCGGTAGAGACATGTCAGCGAGTTTGGTTGACTCCAACTGTTCGTGCA
CTGTATTCAGCGTCTTGGACAAAAATTGGCGATGTATTTTGGAAGATGTT
GAATGCCTTTCCTCACATTTCTTGTTTTTGGAACGATCCTTCCGGGGCGC
CATATGACGTGACGCCAAGCTCGAAGAATGCAAGTTCAGAGTAGAGGTAT
GTGCGCGTCCTCTGTACTCAACCAAATGTAGGGGCTGTTCGTAAGGACTA
ATCGTAGCATCCAACTTAGGAGCCGTTGCAGTGGGGCCCACTTGATGCAG
GGGCACTCCAATGCTCAGGAGCTTTCGTTGCGAGGCGACCATGTGCTGCA
GTGGATGGGAAGTATCGTTTTTTCCTGAATGAAGGTCTCGAAAGAATTCA
TCCTCCCGATCGCGGATCAAGTCATTCAGGCTCTCGCGTGAAATATCCTC
CGTCGATATTGACGAGATAATGGCCCCGGCCTGTGCTCGGACGTCGTGCC
TAAGTATGATCAAGCGGACAAAATGCGAAATATGTTCCTTATCGTTTAAT
TGAAAGCGGCGGGCTTGTTATCCCTGTATACGAAGTATATGTTAACGAGG
GCATATTATTTCTCTTCGGTTGATGATTAATCCATTGGAAACTTCATACT
CGCAAGGAACAATCAAATAGAACCACAAACGAATGATTAGAGTATTGAAA
ACGCAATGGACAGTATAGTATGTAAATGAGCAAAGAGTTGCGCATCGATG
AAGTAGCCTTCTTTTTTGCGAATCGTTTTTAACGGGGGAACCGACTTGTT
GAAAATGACTTCCTAGACTCGCAGTTCTTCGGCCCTGTCGAACATACGTA
CAGTTTCAAATGTTATACGGTGATCTACGCGATATTTTCTCGGCGTGGAT
CAATTATCGACGGGTAGACCAACACGAACTCAGTGCAAAGTAACGCAATG
AGTTATCGAAATGCCACTTGACATACCTGCGAATAGGTTCTGGCAGCTCA
GGCGAAGGTTTTTGCTGCATGTTGCAAGTCAACAACCGTTGCCCAAAAGC
TTTGCCACGTTTTTGTGGCAGTGGTTGCCACGATCTCTCGGGAAGCTTTA
AGCGGCTGATTGCGTACGACCGATATTTGGCACTAAAATGTGTCGACATC
ACATGGTCTGTGAGAGCCCGTCGACCAGGTGTCCGAAATGCAAGAGATGC
CAATTCAGCGTACACCAGGAAGCAACTTTCACAAACAAGAGCAGTCTGCG
TTCACGGTGGGCGTTGCAAGAATAACG
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Coding sequence (CDS) from alignment at H-elongata_contig11310:5690..8666-

>mRNA_H-elongata_contig11310.1064.1 ID=mRNA_H-elongata_contig11310.1064.1|Name=mRNA_H-elongata_contig11310.1064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig11310:5690..8666- (Himanthalia elongata Himel1 dioecious)
ATGGATCTGTATCGCCTTTGCGGCACTCATGATCTCGACGTCATCGATAT
ACGAAAAGTGCTAGAGACTGGCATATGCCTGATCGAATGGCCCGATCGGT
TAGGCGCTGATAAACCTCGGAATCGACTAGATGGATCTGTATCGCCTTTG
CGGCACTCATGATCTCGACGTCATCGATATACGAAAAGTGCTAGAGACTG
GCATATGCCTGATCGAATGGCCCGATCGGTTAGGCGCTGATAAACCTCGG
AATCGACTAGATGTTCAAGTGGATGCTGTCAACGAAGGCGAACGAATCGT
AACTCTTACTGGGCACGGCGCTTGGTGGGCGGCGACTGTAGATGATTTCA
GGGACGACCGACAATGAATGTTCAAGTGGATGCTGTCAACGAAGGCGAAC
GAATCGTAACTCTTACTGGGCACGGCGCTTGGTGGGCGGCGACTGTAGAT
GATTTCAGGGACGACCGACAATGA
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