mRNA_H-elongata_contig11309.1061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11309.1061.1
Unique NamemRNA_H-elongata_contig11309.1061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6H5L146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.030e-41
Identity = 78/126 (61.90%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDY---GYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            DKPYEYV V S  LA V+ DGSPFAE+++  K GT DVV+FRN+RRDARLV PCR G      YAHLAAFVR+AP+ Q            VV FF AVG  LE+E+ASR D+ PVWLSTSGLGVYW
Sbjct:  149 DKPYEYVLVDSPRLAAVTADGSPFAEHIA-SKQGTDDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFVRTAPRDQ------------VVKFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 261          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: D8LJS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.220e-40
Identity = 76/126 (60.32%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDY---GYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            DKPYEYV V S  LA V+ DG PFAE+++  KG T DVV+FRN+RRDARLV PCR G      YAHLAAF+R+AP+ Q            VV FF AVG  LE+E+ASR D+ PVWLSTSGLGVYW
Sbjct:  152 DKPYEYVLVDSPRLAAVTADGRPFAEHIASRKG-TNDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFLRTAPRDQ------------VVQFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 264          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: UPI001880BA32 (hypothetical protein n=1 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001880BA32)

HSP 1 Score: 85.9 bits (211), Expect = 2.190e-18
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   10 YEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPC-RAGDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            +E+V V S +LA V  + S FA + +   G    ++TF N+ +DA LV PC +A    Y H+AAF+R AP QQ                +++VG ALE+++    D+ P+WLSTSGLGVYW
Sbjct:   73 FEFVLVDSPNLAGVQANPSDFASHFAAA-GEKESIITFPNLGKDALLVVPCPKASTSTYRHIAAFMREAPTQQKHA------------LWQSVGLALEQKL----DEHPIWLSTSGLGVYW 176          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6B3M9Q3_9CYAN (Uncharacterized protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3M9Q3_9CYAN)

HSP 1 Score: 86.3 bits (212), Expect = 2.300e-18
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVV-TFRNMRRDARLVSPCRAG-DYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            ++ +E+VT++S  LA V P+   FA+++  G     D+V  F N+  DA L++PC+ G    Y HLA FVR APK+Q            +  F+R +G  LE+ + +R +  P+W+STSGLGVYW
Sbjct:   89 EQTFEFVTLNSPQLANVLPEPDAFAQHI--GDSMNRDLVKVFPNLGGDALLIAPCQNGPQQHYTHLAKFVRCAPKKQ------------IDKFWRTIGYTLEQTLQAR-EPHPLWVSTSGLGVYW 198          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A1Z4VMG1_9GAMM (Uncharacterized protein n=4 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VMG1_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 2.930e-18
Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPC-RAGDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            D+PYE V V + SLA + PD   FA+      GG   +  F N   DARL++PC +A    YAHL  FVR+AP  Q               F+R VGAAL   ++S     P+WLSTSGLGVYW
Sbjct:   79 DRPYEQVCVDAPSLAGIRPDPHSFADQFDRHCGGG-GIAEFANPGGDARLIAPCPQASTDCYAHLLTFVRTAPAAQCDA------------FWRRVGAALGRALSST----PLWLSTSGLGVYW 185          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A553PSV5_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PSV5_TIGCA)

HSP 1 Score: 87.0 bits (214), Expect = 1.860e-17
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    4 KPYEYVTVSSSSLARVSP-DGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAG--DYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            +P+E+V V+S +LARV   D   F E+ +     + DVV F N+RRDA+LV+PC     D G YAHLA FVR   + Q R             F+R V  A+   V  +GD +PVWLSTSGLGVYW
Sbjct:  579 RPFEFVIVNSPTLARVKKSDVHSFQEHFNVC---SKDVVQFYNLRRDAKLVTPCPKNMPDNGSYAHLAKFVRLGDEIQIR------------EFWRTVAQAMRSRVKDQGD-QPVWLSTSGLGVYW 688          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A2D6ITT3_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6ITT3_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 4.860e-17
Identity = 52/124 (41.94%), Postives = 62/124 (50.00%), Query Frame = 1
Query:    1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRA-GDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            D P+E V V S  L+ V+ D  PF   L         +  F N+  DA L++PC   G   YAHLA FVR AP Q  R             F+  VG AL   +AS+    PVWLSTSGLGVYW
Sbjct:   67 DTPFECVVVDSPVLSGVTADSGPFGSQLD-ALHSPDGIALFENLGGDALLIAPCTGQGAVAYAHLALFVRHAPLQLQR------------TFWARVGTALAASLASK----PVWLSTSGLGVYW 173          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6I5N7J3_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5N7J3_9CYAN)

HSP 1 Score: 82.0 bits (201), Expect = 6.300e-17
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 KPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGD-YGYAHLAAFVRS-APKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            +P+E V   S  LA+++PD S F+E+     G    + TF ++ +DA LV+PC  G   GYAHL AF+RS A  QQA                 A+  A+ + V S+ + RP+WLSTSGLGV W
Sbjct:   69 QPFECVLTESEQLAKIAPDPSDFSEHFRAAAGA---IATFESLGKDALLVTPCPQGSGKGYAHLGAFMRSDAAAQQA-----------------ALWQAVSQAVQSQLNQRPLWLSTSGLGVSW 172          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: B0C9H1_ACAM1 (Uncharacterized protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0C9H1_ACAM1)

HSP 1 Score: 82.4 bits (202), Expect = 6.670e-17
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    4 KPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDR--PVWLSTSGLGVYW 369
            +P+E+V V++ SLA+VSP+  PFA+YL   + G   +  F N+  DA L++P   G    Y HLA FVR  P +Q            V + ++ +G+ L++ +    + R  P+W+STSGLGVYW
Sbjct:   85 QPWEFVVVNAPSLAKVSPNPQPFAQYL---ERGDDPIQVFANLGGDAMLIAPRVLGPLPTYTHLANFVRQGPPEQ------------VDDMWQVLGSTLQQLIGDELNSRTAPLWVSTSGLGVYW 194          
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A2E9JVB4_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9JVB4_9GAMM)

HSP 1 Score: 82.0 bits (201), Expect = 8.030e-17
Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    7 PYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
            P+E V V+S +L+ V+ D  PF   L         + TF N+  DA L++PC     G YAHLA FVR AP Q  R             F+  VGAAL   +A      PVWLSTSGLGVYW
Sbjct:   77 PFECVVVNSPALSGVAADSGPFGSQLDR-LHSPDGIATFENLGGDALLIAPCTGQGAGAYAHLAIFVRHAPLQLQR------------TFWARVGAALAASLAGN----PVWLSTSGLGVYW 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L146_9PHAE1.030e-4161.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS5_ECTSI2.220e-4060.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001880BA322.190e-1840.50hypothetical protein n=1 Tax=unclassified Coleofas... [more]
A0A6B3M9Q3_9CYAN2.300e-1839.20Uncharacterized protein n=1 Tax=Symploca sp. SIO2E... [more]
A0A1Z4VMG1_9GAMM2.930e-1843.55Uncharacterized protein n=4 Tax=Thiohalobacter Tax... [more]
A0A553PSV5_TIGCA1.860e-1745.24Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A2D6ITT3_9GAMM4.860e-1741.94Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
A0A6I5N7J3_9CYAN6.300e-1740.32Uncharacterized protein n=1 Tax=Leptolyngbya sp. S... [more]
B0C9H1_ACAM16.670e-1737.60Uncharacterized protein n=1 Tax=Acaryochloris mari... [more]
A0A2E9JVB4_9GAMM8.030e-1742.62Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11309contigH-elongata_contig11309:577..1876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue9.1e-33
Seed eggNOG ortholog2880.D8LJS5
EggNOG OGs2B3PJ@1,2S91Y@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted protein similar to EsV-1-207
Ec32 orthologEc-12_003090.1
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11309.1061.1prot_H-elongata_contig11309.1061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11309 577..1876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.6183455-CDS-H-elongata_contig11309:576..6761622929651.6183455-CDS-H-elongata_contig11309:576..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 577..676 +
1691679106.082852-CDS-H-elongata_contig11309:576..6761691679106.082852-CDS-H-elongata_contig11309:576..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 577..676 +
1622929651.6338353-CDS-H-elongata_contig11309:1052..12131622929651.6338353-CDS-H-elongata_contig11309:1052..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 1053..1213 +
1691679106.0958426-CDS-H-elongata_contig11309:1052..12131691679106.0958426-CDS-H-elongata_contig11309:1052..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 1053..1213 +
1622929651.6498494-CDS-H-elongata_contig11309:1765..18761622929651.6498494-CDS-H-elongata_contig11309:1765..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 1766..1876 +
1691679106.1137462-CDS-H-elongata_contig11309:1765..18761691679106.1137462-CDS-H-elongata_contig11309:1765..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11309 1766..1876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11309.1061.1

>prot_H-elongata_contig11309.1061.1 ID=prot_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARL
VSPCRAGDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALE
EEVASRGDDRPVWLSTSGLGVYW*
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mRNA from alignment at H-elongata_contig11309:577..1876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11309.1061.1 ID=mRNA_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig11309:577..1876+ (Himanthalia elongata Himel1 dioecious)
GACAAGCCTTACGAGTACGTGACCGTGAGCTCTTCCTCGTTGGCGCGCGT CTCACCCGACGGAAGCCCCTTCGCCGAGTACTTGTCGCCTGGGAAAGGTG GTGCTTCCACCCTATCCCGAGTCCCGCCACCCAAATCAAGTACTAGCTTT CCTTATTTGTAAAAAACATCTTGGATATTATTTTGCATCCAACCGCATGA CTCCACGATAGGGACTCTCGATCCTTGATGGGAATTCATTCACCTACAGA TTGCGTCCTCTAGAGTTATCGATAGAGGGTCGTTCGGATCACATCCCTTT AAACCTCATTATGCTTCATAGGTCGCAGGAAACGTGACCCTCGATATCTC TGATGGCACTCCCTCTCTTCGTTTGGTACTGCGAGGACGACTGAAAAGCT ACCGCGCGCCGAGTGACCTTTCTTAAATGCTCGGTAAGAAAACAAAAACC CGCTTCAACATGTGCTGCGTTTCCAGGCACGACCGACGTGGTCACCTTCC GAAATATGAGGAGGGACGCCCGGCTTGTTTCGCCTTGCCGAGCGGGAGAC TACGGCTACGCGCATCTAGCGGCATTCGTGAGAAGTGCGCCGAAGCAGCA GGCGAGGATGGGGGGGGGGGGGATTTTTCCAACCGCTGTATTTTGCTGCG TGCTGCCGCTTCTGCTTTTAAAGAGCCTCCTGCTCGAGCTTGGGTGATTG ATCGGCGCTATCACATTGCTGCAGTAGGCAGTGGACGCCTCGCTTTCTTC TACGACGTTTTCCGGGCGATCCCTATCTTCGAGCGCGGTGGTAAATTAAA GTTGCTGAGAGACCGGGGCGTCAATAGCACTGCGGGTAGATATTTCTTCA ACGAGGCGCGGCGATCGGATAGACCTGATTTGAATCGAGCCGCCTCGAAC AGCATCGAGGCTGAATGATGATGCTAATACGTAATACAGACAAAATATGG CGTCGTATCCATACCAAGTGATCGAACGCAGTGCCGGGAACATCGGGGAC ATGACATCAATGACTGAATGTCTGCACCCCAAAAATATCCTTCTGCACAG TTTTTGTCTTTCAACAATATAAAAGCGTTTAAGTTATGTGCGGCTCGTGC TCGTGTAGTGTCCCACGTGTCTCCCCACCATTTCCTAATTGTTTCGGGTG GCTTTAGACATGATGAACAATTTTGGCATATACTCGTAGGTGGTGAATTT TTTCAGAGCTGTCGGAGCGGCCCTGGAAGAAGAGGTTGCCTCGAGGGGGG ACGACCGACCCGTGTGGCTCAGTACGTCAGGTCTTGGCGTATACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11309:577..1876+

>mRNA_H-elongata_contig11309.1061.1 ID=mRNA_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig11309:577..1876+ (Himanthalia elongata Himel1 dioecious)
GACAAGCCTTACGAGTACGTGACCGTGAGCTCTTCCTCGTTGGCGCGCGT
CTCACCCGACGGAAGCCCCTTCGCCGAGTACTTGTCGCCTGGGAAAGGTG
GACAAGCCTTACGAGTACGTGACCGTGAGCTCTTCCTCGTTGGCGCGCGT
CTCACCCGACGGAAGCCCCTTCGCCGAGTACTTGTCGCCTGGGAAAGGTG
GCACGACCGACGTGGTCACCTTCCGAAATATGAGGAGGGACGCCCGGCTT
GTTTCGCCTTGCCGAGCGGGAGACTACGGCTACGCGCATCTAGCGGCATT
CGTGAGAAGTGCGCCGAAGCAGCAGGCGAGGATGGGGGGGGGGGGGATTT
TTCCAACCGCTGCACGACCGACGTGGTCACCTTCCGAAATATGAGGAGGG
ACGCCCGGCTTGTTTCGCCTTGCCGAGCGGGAGACTACGGCTACGCGCAT
CTAGCGGCATTCGTGAGAAGTGCGCCGAAGCAGCAGGCGAGGATGGGGGG
GGGGGGGATTTTTCCAACCGCTGTGGTGAATTTTTTCAGAGCTGTCGGAG
CGGCCCTGGAAGAAGAGGTTGCCTCGAGGGGGGACGACCGACCCGTGTGG
CTCAGTACGTCAGGTCTTGGCGTATACTGGTGAGTGGTGAATTTTTTCAG
AGCTGTCGGAGCGGCCCTGGAAGAAGAGGTTGCCTCGAGGGGGGACGACC
GACCCGTGTGGCTCAGTACGTCAGGTCTTGGCGTATACTGGTGA
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