mRNA_H-elongata_contig113070.1060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113070.1060.1
Unique NamemRNA_H-elongata_contig113070.1060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.820e-29
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L+V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:   82 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 196
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.030e-27
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI   ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:  163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 277
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.460e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L+V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:  291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 405
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.900e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L+V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:  378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 492
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.690e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L+V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct: 1357 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 1471
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.720e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L+V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct: 1455 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 1569
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.980e-27
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:  977 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 1091
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.070e-27
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+  T+ +G+ + RGSGL L V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct: 1680 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 1794
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.690e-26
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            R  +GS+MW+S   RPDI+  ++A ARH+H P  RHWKA+++I AY+   + +G+ + RGSGL L V+ DA YA     RSVSG+A  +G T IS  S TQ  V+ ++ EAEY+A
Sbjct:  623 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKEKRDLGITYKRGSGLGLEVYVDASYAGAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIA 737
[Close]
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.070e-25
Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    1 RALVGSLMWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRFVRG--SGLRLSVFADADYAAVRV-WRSVSGVAVLLGDTAISWKSSTQKCVTTATCEAEYVA 345
            RAL+GSL+W++++ RPDIAN ++A AR+   P   HW+A L I  Y   T   G+ F RG  SG  L  FADADYA+     RSVSG  V+    AI+W S TQKCVT +T +AEYVA
Sbjct:  164 RALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVA 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113070.1060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI8_9PHAE3.820e-2948.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.030e-2748.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE2.460e-2748.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE2.900e-2748.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L715_9PHAE3.690e-2748.70CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE3.720e-2748.70CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4H5_9PHAE4.980e-2748.70CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5LGF7_9PHAE5.070e-2748.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSU1_9PHAE1.690e-2647.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE3.070e-2550.85Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113070contigH-elongata_contig113070:97..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score80.9
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog7029.ACYPI067959-PA
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A5XY@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113070.1060.1prot_H-elongata_contig113070.1060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113070 97..589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.5555322-CDS-H-elongata_contig113070:96..2051622929651.5555322-CDS-H-elongata_contig113070:96..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113070 97..205 -
1691679106.0474184-CDS-H-elongata_contig113070:96..2051691679106.0474184-CDS-H-elongata_contig113070:96..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113070 97..205 -
1622929651.5713198-CDS-H-elongata_contig113070:374..5891622929651.5713198-CDS-H-elongata_contig113070:374..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113070 375..589 -
1691679106.0598564-CDS-H-elongata_contig113070:374..5891691679106.0598564-CDS-H-elongata_contig113070:374..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113070 375..589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.5850174-UTR-H-elongata_contig113070:589..6101622929651.5850174-UTR-H-elongata_contig113070:589..610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113070 590..610 -
1691679106.0714896-UTR-H-elongata_contig113070:589..6101691679106.0714896-UTR-H-elongata_contig113070:589..610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113070 590..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113070.1060.1

>prot_H-elongata_contig113070.1060.1 ID=prot_H-elongata_contig113070.1060.1|Name=mRNA_H-elongata_contig113070.1060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MWMSVMMRPDIANDLQACARHSHNPTARHWKALLRIAAYVNATKKIGLRF
VRGSGLRLSVFADADYAAVRVWRSVSGVAVLLGDTAISWKSSTQKCVTTA
TCEAEYVA
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mRNA from alignment at H-elongata_contig113070:97..610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113070.1060.1 ID=mRNA_H-elongata_contig113070.1060.1|Name=mRNA_H-elongata_contig113070.1060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=514bp|location=Sequence derived from alignment at H-elongata_contig113070:97..610- (Himanthalia elongata Himel1 dioecious)
CGTGCCCTTGTAGGGAGTCTGATGTGGATGTCAGTAATGATGAGACCGGA
CATTGCGAATGATCTCCAAGCTTGTGCACGTCATAGCCATAACCCTACCG
CACGACATTGGAAGGCACTTCTACGAATAGCCGCGTACGTGAATGCAACG
AAAAAGATTGGTTTAAGGTTTGTGCGTGGTTCCGGGCTGAGACTTTCTGT
GTTTGCAGATGCCGATTACGCGGCGGTCCGTGTCTGGTGTAGCAGTACTT
CTGGGTGACACAGCAATAAGCTGGAAAAGTAGTACGCAGAAATGTGTGAC
GACTGCAACCTGTGAGNNNNNNNNNNGTTTAAGGTTCGTGCGTGGTTCTG
GCCTGAGACTTTCTGTGTTTGTAGACGCCGATTACGCGGCGGCATCAAAT
GATAGGCGGTCCGTGTCTGGTGTAGCAGTACTTCTGGGTGACACAGCAAT
AAGCTGGAAAAGTAGTACGCAGAAATGTGTGACGACTGCAACCTGTGAGG
CTGAGTACGTTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig113070:97..610-

>mRNA_H-elongata_contig113070.1060.1 ID=mRNA_H-elongata_contig113070.1060.1|Name=mRNA_H-elongata_contig113070.1060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig113070:97..610- (Himanthalia elongata Himel1 dioecious)
ATGTGGATGTCAGTAATGATGAGACCGGACATTGCGAATGATCTCCAAGC
TTGTGCACGTCATAGCCATAACCCTACCGCACGACATTGGAAGGCACTTC
TACGAATAGCCGCGTACGTGAATGCAACGAAAAAGATTGGTTTAAGGTTT
GTGCGTGGTTCCGGGCTGAGACTTTCTGTGTTTGCAGATGCCGATTACGC
GGCGGTCCGTGTCTGATGTGGATGTCAGTAATGATGAGACCGGACATTGC
GAATGATCTCCAAGCTTGTGCACGTCATAGCCATAACCCTACCGCACGAC
ATTGGAAGGCACTTCTACGAATAGCCGCGTACGTGAATGCAACGAAAAAG
ATTGGTTTAAGGTTTGTGCGTGGTTCCGGGCTGAGACTTTCTGTGTTTGC
AGATGCCGATTACGCGGCGGTCCGTGTCTGGCGGTCCGTGTCTGGTGTAG
CAGTACTTCTGGGTGACACAGCAATAAGCTGGAAAAGTAGTACGCAGAAA
TGTGTGACGACTGCAACCTGTGAGGCTGAGTACGTTGCCGCGGTCCGTGT
CTGGTGTAGCAGTACTTCTGGGTGACACAGCAATAAGCTGGAAAAGTAGT
ACGCAGAAATGTGTGACGACTGCAACCTGTGAGGCTGAGTACGTTGCC
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