mRNA_H-elongata_contig11304.1059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11304.1059.1
Unique NamemRNA_H-elongata_contig11304.1059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: D7G5R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.490e-12
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 ITRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVGARQ 129
            +TRQML  IISRP+LSDKLL MPPFRFLHDIVSEVTRQ G  Q
Sbjct:  281 VTRQMLEPIISRPRLSDKLLNMPPFRFLHDIVSEVTRQTGFGQ 323
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A7S2CW62_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CW62_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.280e-9
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 ITRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            +T+ +LG ++ +PKLSDKLL  PPFRFLHD++SEVTR  G
Sbjct:  115 VTQALLGEVVKKPKLSDKLLSKPPFRFLHDVISEVTRATG 154
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A8J5XXU0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XXU0_DIALT)

HSP 1 Score: 59.3 bits (142), Expect = 7.190e-9
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    4 TRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            T+ +LG II RPKL+D LLK PPFRFLHDIVSEVT+  G
Sbjct:   14 TQSLLGAIIKRPKLTDALLKKPPFRFLHDIVSEVTKVTG 52
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A0G4FF46_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FF46_VITBC)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 ITRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG-ARQVGSAHEDDGSHLS 168
            +T+Q LG +ISRPKL+ K L  PPFRFLHDIV+EV R  G A+ +   HE +  H++
Sbjct:    7 LTQQTLGSLISRPKLTPKYLVKPPFRFLHDIVTEVIRTTGFAKGLFDQHEKNSEHIT 63
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A812ICK4_9DINO (Traf3ip1 protein n=7 Tax=Symbiodinium TaxID=2949 RepID=A0A812ICK4_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 TRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVGARQ 129
            T+Q +G +IS+PK++DK LK PPFRFLHD+V EVTR  G  Q
Sbjct:    9 TQQTIGTLISKPKMADKYLKKPPFRFLHDLVMEVTRTTGFAQ 50
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A7S4NCB2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4NCB2_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 2.820e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 TRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            T+  LG +I RPKLSD LL  PPFRFLHDIVSEVT+  G
Sbjct:   32 TKATLGTLIKRPKLSDALLLKPPFRFLHDIVSEVTKATG 70
[Close]
BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A482SVZ6_9ARCH (MIP-T3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVZ6_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 3.170e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 ITRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            +T+Q+LG +I+RPKLS+KLL  PPFRFLHDI+ EV R  G
Sbjct:  163 MTQQLLGPLITRPKLSEKLLAKPPFRFLHDIIMEVIRATG 202
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BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: W4G1T5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1T5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.460e-8
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    4 TRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            T++M+  IIS+PK+S KLL  PPFRFLHDIVSEVTR  G
Sbjct:  267 TKEMVETIISKPKMSAKLLSKPPFRFLHDIVSEVTRSTG 305
[Close]
BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A835YT93_9STRA (Microtubule-binding protein MIP-T3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT93_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.740e-8
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 ITRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            +T  M+  +ISRPK+S+KLL  PPFRFLHDI+SEVTR  G
Sbjct:  263 VTMTMMERLISRPKMSEKLLSKPPFRFLHDIISEVTRVTG 302
[Close]
BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Match: A0A7S3C572_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C572_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 6.420e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 TRQMLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVG 120
            T+  LG +I RPKL+D LL+ PPFRFLHDIVSEVT+  G
Sbjct:   22 TKSTLGTLIKRPKLTDPLLQKPPFRFLHDIVSEVTKATG 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11304.1059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5R8_ECTSI1.490e-1281.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CW62_9STRA5.280e-962.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J5XXU0_DIALT7.190e-971.79Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4FF46_VITBC1.840e-852.63Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A812ICK4_9DINO1.850e-861.90Traf3ip1 protein n=7 Tax=Symbiodinium TaxID=2949 R... [more]
A0A7S4NCB2_9EUKA2.820e-869.23Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A482SVZ6_9ARCH3.170e-865.00MIP-T3 domain-containing protein n=1 Tax=archaeon ... [more]
W4G1T5_9STRA3.460e-869.23Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A835YT93_9STRA4.740e-865.00Microtubule-binding protein MIP-T3-domain-containi... [more]
A0A7S3C572_9EUKA6.420e-866.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11304contigH-elongata_contig11304:8394..8561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue4.2e-08
Seed eggNOG ortholog2880.D7G5R8
Preferred nameTRAF3IP1
KEGG koko:K19680
GOsGO:0000003,GO:0000122,GO:0001654,GO:0001655,GO:0001738,GO:0001817,GO:0001818,GO:0001822,GO:0001932,GO:0001933,GO:0002009,GO:0002119,GO:0002164,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008306,GO:0008589,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0021532,GO:0021915,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030992,GO:0031076,GO:0031110,GO:0031113,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031503,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032271,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032504,GO:0032648,GO:0032688,GO:0032838,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035735,GO:0035869,GO:0036064,GO:0036342,GO:0040011,GO:0040024,GO:0042073,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042509,GO:0042532,GO:0042592,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043900,GO:0043901,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0045892,GO:0045934,GO:0045936,GO:0045992,GO:0045995,GO:0046425,GO:0046426,GO:0046907,GO:0048513,GO:0048519,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048736,GO:0048793,GO:0048856,GO:0048878,GO:0050687,GO:0050688,GO:0050730,GO:0050732,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051493,GO:0051641,GO:0051649,GO:0051960,GO:0051961,GO:0055088,GO:0055115,GO:0060173,GO:0060255,GO:0060271,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0080090,GO:0080134,GO:0097014,GO:0097542,GO:0097546,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901620,GO:1901621,GO:1902531,GO:1902532,GO:1902679,GO:1902903,GO:1903506,GO:1903507,GO:1904892,GO:1904893,GO:1905515,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG3809@1,KOG3809@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.4845188-CDS-H-elongata_contig11304:8393..85491622929651.4845188-CDS-H-elongata_contig11304:8393..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11304 8394..8549 -
1691679106.0269318-CDS-H-elongata_contig11304:8393..85491691679106.0269318-CDS-H-elongata_contig11304:8393..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11304 8394..8549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.5022285-UTR-H-elongata_contig11304:8549..85611622929651.5022285-UTR-H-elongata_contig11304:8549..8561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11304 8550..8561 -
1691679106.0380342-UTR-H-elongata_contig11304:8549..85611691679106.0380342-UTR-H-elongata_contig11304:8549..8561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11304 8550..8561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11304.1059.1prot_H-elongata_contig11304.1059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11304 8394..8549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11304.1059.1

>prot_H-elongata_contig11304.1059.1 ID=prot_H-elongata_contig11304.1059.1|Name=mRNA_H-elongata_contig11304.1059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MLGLIISRPKLSDKLLKMPPFRFLHDIVSEVTRQVGARQVGSAHEDDGSH
LS
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mRNA from alignment at H-elongata_contig11304:8394..8561-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11304.1059.1 ID=mRNA_H-elongata_contig11304.1059.1|Name=mRNA_H-elongata_contig11304.1059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig11304:8394..8561- (Himanthalia elongata Himel1 dioecious)
ATCACCAGGCAGATGCTAGGGCTTATTATCAGCCGCCCGAAGCTGAGTGA
TAAGTTACTGAAAATGCCGCCCTTTCGGTTCCTGCACGACATCGTGTCGG
AGGTCACCAGACAGGTAGGTGCCAGACAAGTTGGCAGCGCCCACGAGGAC
GATGGATCGCATTTGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig11304:8394..8561-

>mRNA_H-elongata_contig11304.1059.1 ID=mRNA_H-elongata_contig11304.1059.1|Name=mRNA_H-elongata_contig11304.1059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig11304:8394..8561- (Himanthalia elongata Himel1 dioecious)
ATGCTAGGGCTTATTATCAGCCGCCCGAAGCTGAGTGATAAGTTACTGAA
AATGCCGCCCTTTCGGTTCCTGCACGACATCGTGTCGGAGGTCACCAGAC
AGGTAGGTGCCAGACAAGTTGGCAGCGCCCACGAGGACGATGGATCGCAT
TTGTCCATGCTAGGGCTTATTATCAGCCGCCCGAAGCTGAGTGATAAGTT
ACTGAAAATGCCGCCCTTTCGGTTCCTGCACGACATCGTGTCGGAGGTCA
CCAGACAGGTAGGTGCCAGACAAGTTGGCAGCGCCCACGAGGACGATGGA
TCGCATTTGTCC
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