mRNA_H-elongata_contig11287.1052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11287.1052.1
Unique NamemRNA_H-elongata_contig11287.1052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11287.1052.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.110e-19
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 MGGLEVIPNRPDPSYRWEMLYVDTG----ELFLHFAGKLKHVIPGLEVGEG--CNPQGREHKNAFGMYLPCRGHISDLTRDTLLQCMPNTSERCAELMPSQDPTIRR 303
            +GG+EV P+ P PSY +E+L + T      LFLHF G++KH+IPG+++G    C   GR HK  F    PC    S  TR+ L  C+ NT++RC   M S DP +RR
Sbjct:  148 LGGVEVFPHPPAPSYEFELLNISTPTGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESP-TRERLESCLWNTTKRCVNYMTSTDPAVRR 253
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BLAST of mRNA_H-elongata_contig11287.1052.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.160e-15
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 MGGLEVIPNRPDPSYRWEMLY--VD---TGELFLHFAGKLKHVIPGLEVGE--GCNPQGREHKNAFGMYLPCRGHISDLTRDTLLQCMPNTSERCAELMPSQDPTIRR 303
            +GG+ +IP+ P   + +E+L   +D   + ELFLHF G  KHVIPG+++G    C   GR H++ F    PC       TRD L+ C+ +TS  C   MPS DP +RR
Sbjct:   51 VGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMP-TRDRLVSCLYDTSPSCVRHMPSADPAVRR 157
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BLAST of mRNA_H-elongata_contig11287.1052.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-15
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 MGGLEVIPNRPDPSYRWEMLYVDTG-----ELFLHFAGKLKHVIPGLEVGE--GCNPQGREHKNAFGMYLPCRGHISDLTRDTLLQCMPNTSERCAELMPSQDPTIRR 303
            +GG+ +IP+ P   + +E+L  + G     ELFLHF G  KH+IPG+++G    C   GR H++ F    PC       TRD L+ C+ +TS  C   MPS DP +RR
Sbjct:   44 VGGMTIIPHPPASLHEFELLKRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMP-TRDRLVSCLYDTSASCVRHMPSADPAVRR 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11287.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L183_9PHAE2.110e-1943.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSW1_ECTSI1.160e-1540.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZR3_9PHAE2.200e-1539.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11287contigH-elongata_contig11287:4513..5111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.407678-CDS-H-elongata_contig11287:4512..46081622929650.407678-CDS-H-elongata_contig11287:4512..4608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11287 4513..4608 +
1691679105.4777362-CDS-H-elongata_contig11287:4512..46081691679105.4777362-CDS-H-elongata_contig11287:4512..4608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11287 4513..4608 +
1622929650.428272-CDS-H-elongata_contig11287:4901..51111622929650.428272-CDS-H-elongata_contig11287:4901..5111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11287 4902..5111 +
1691679105.4872859-CDS-H-elongata_contig11287:4901..51111691679105.4872859-CDS-H-elongata_contig11287:4901..5111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11287 4902..5111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11287.1052.1prot_H-elongata_contig11287.1052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11287 4513..5111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11287.1052.1

>prot_H-elongata_contig11287.1052.1 ID=prot_H-elongata_contig11287.1052.1|Name=mRNA_H-elongata_contig11287.1052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGGLEVIPNRPDPSYRWEMLYVDTGELFLHFAGKLKHVIPGLEVGEGCNP
QGREHKNAFGMYLPCRGHISDLTRDTLLQCMPNTSERCAELMPSQDPTIR
R*
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mRNA from alignment at H-elongata_contig11287:4513..5111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11287.1052.1 ID=mRNA_H-elongata_contig11287.1052.1|Name=mRNA_H-elongata_contig11287.1052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=599bp|location=Sequence derived from alignment at H-elongata_contig11287:4513..5111+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCCTTGAGGTGATTCCAAACAGGCCTGACCCGTCGTATAGGTG
GGAAATGCTCTATGTCGACACTGGAGAGCTGTTCCTGCATTTTGCTGTAA
GTAGCACACACTGGTGGGTAAAGCCGTTTCGAGGGTATAACCGACTAAAC
AAACTAAATGCAGTTGGGCTGAGAAGAAGTGGGATCCTAAGCGAATATTA
ATGCTTGCCCGTATGTCCATGTTCGTCGAAAATACGTGGGATATCAAAAT
ACCTAACAATTTATCTATGAGCTAAATCATCGTCTAAATGAAATTGCTGC
GCTCGGCCGGTATCTCGCGAACATCACGAACGACCCTTTCAAGTATGAGA
GCAAATGTCTTAATCCTGACGATGATTTCGTTTTGTCAGGGAAAGCTCAA
GCACGTGATTCCAGGGCTAGAAGTTGGGGAAGGCTGCAACCCCCAGGGAA
GGGAGCACAAGAATGCGTTCGGGATGTACCTTCCATGTCGAGGACACATT
AGCGATCTTACTCGAGACACTCTTCTTCAGTGCATGCCAAACACGTCCGA
GCGTTGCGCTGAGCTGATGCCCTCTCAAGATCCAACCATTCGACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11287:4513..5111+

>mRNA_H-elongata_contig11287.1052.1 ID=mRNA_H-elongata_contig11287.1052.1|Name=mRNA_H-elongata_contig11287.1052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig11287:4513..5111+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCCTTGAGGTGATTCCAAACAGGCCTGACCCGTCGTATAGGTG
GGAAATGCTCTATGTCGACACTGGAGAGCTGTTCCTGCATTTTGCTATGG
GAGGCCTTGAGGTGATTCCAAACAGGCCTGACCCGTCGTATAGGTGGGAA
ATGCTCTATGTCGACACTGGAGAGCTGTTCCTGCATTTTGCTGGAAAGCT
CAAGCACGTGATTCCAGGGCTAGAAGTTGGGGAAGGCTGCAACCCCCAGG
GAAGGGAGCACAAGAATGCGTTCGGGATGTACCTTCCATGTCGAGGACAC
ATTAGCGATCTTACTCGAGACACTCTTCTTCAGTGCATGCCAAACACGTC
CGAGCGTTGCGCTGAGCTGATGCCCTCTCAAGATCCAACCATTCGACGGT
GAGGAAAGCTCAAGCACGTGATTCCAGGGCTAGAAGTTGGGGAAGGCTGC
AACCCCCAGGGAAGGGAGCACAAGAATGCGTTCGGGATGTACCTTCCATG
TCGAGGACACATTAGCGATCTTACTCGAGACACTCTTCTTCAGTGCATGC
CAAACACGTCCGAGCGTTGCGCTGAGCTGATGCCCTCTCAAGATCCAACC
ATTCGACGGTGA
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