mRNA_H-elongata_contig112784.1045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112784.1045.1
Unique NamemRNA_H-elongata_contig112784.1045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.990e-39
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            RANVVITSYNVLR DADVL  QGWL+LVLDEAH+LRNPATRTAKAARALRS+HR+GLTGTPIQNSVLELWSLF+FLMPG
Sbjct:  968 RANVVITSYNVLRTDADVLGKQGWLYLVLDEAHLLRNPATRTAKAARALRSNHRVGLTGTPIQNSVLELWSLFEFLMPG 1046          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.040e-38
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            RANVVITSYNVLR DA+VL  QGWL+LVLDEAH+LRNPATRTAKAARALRS+HR+GLTGTPIQNSVLELWSLF+FLMPG
Sbjct: 1837 RANVVITSYNVLRTDAEVLGKQGWLYLVLDEAHLLRNPATRTAKAARALRSNHRVGLTGTPIQNSVLELWSLFEFLMPG 1915          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A7S0BDZ4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDZ4_9RHOD)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-24
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 ANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            A++V+TSY VL  D +  R   W + VLDE HV++NP TR AKA R + + HRL L+GTPIQN+VLELW++F FLMPG
Sbjct:   30 ADLVVTSYEVLASDLEHFRSIRWNYQVLDEGHVIKNPKTRAAKAVRCISASHRLLLSGTPIQNTVLELWAIFDFLMPG 107          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A1B7N6B0_9AGAM (Uncharacterized protein n=2 Tax=Rhizopogon TaxID=5375 RepID=A0A1B7N6B0_9AGAM)

HSP 1 Score: 104 bits (260), Expect = 2.130e-24
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            + +VVITSY V+R D   L D  WL+ +LDE HV++N  T+  KA +A+R+ HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1448 KKDVVITSYEVVRNDISTLEDFSWLYCILDEGHVIKNAKTKLTKAVKAIRAQHRLILSGTPIQNNVLELWSLFDFLMPG 1526          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: S3C1C1_OPHP1 (Tata-binding protein-associated factor mot1 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3C1C1_OPHP1)

HSP 1 Score: 104 bits (259), Expect = 2.900e-24
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            + +++ITSY+V R D D+L    W ++VLDE H+++NP T+ + A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1416 KTDIIITSYDVCRNDVDILEKHNWNYVVLDEGHLIKNPRTKISMAVKKLASNHRLILTGTPIQNNVLELWSLFDFLMPG 1494          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A3D8RBA2_9HELO (Putative MOT1-transcriptional accessory protein n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8RBA2_9HELO)

HSP 1 Score: 103 bits (258), Expect = 3.960e-24
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            + ++VITSY++ R DADVL    W +LVLDE H+++NP  +   A ++L+S+HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1410 KTDIVITSYDICRNDADVLMPLNWNYLVLDEGHLIKNPRAKVTVAVKSLQSNHRLILSGTPIQNNVLELWSLFDFLMPG 1488          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: G4N3K7_MAGO7 (TATA-binding protein-associated factor MOT1 n=7 Tax=Pyricularia TaxID=48558 RepID=G4N3K7_MAGO7)

HSP 1 Score: 103 bits (258), Expect = 3.960e-24
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            +A++VITSY+V R D DV+    W ++VLDE H+++NP  +T+ A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1409 KADIVITSYDVCRNDIDVIDKYNWNYVVLDEGHLIKNPKAKTSIAVKRLMSNHRLILTGTPIQNNVLELWSLFDFLMPG 1487          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A1W2TMP8_ROSNE (Putative tata-binding protein-associated factor mot1 protein n=7 Tax=Fungi TaxID=4751 RepID=A0A1W2TMP8_ROSNE)

HSP 1 Score: 103 bits (258), Expect = 3.960e-24
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    7 NVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            ++V+TSY V R DAD+L  Q W ++VLDE H+++NP  + + A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1413 DIVVTSYEVCRNDADLLEKQSWNYIVLDEGHLIKNPKAKISLAVKKLASNHRLILTGTPIQNNVLELWSLFDFLMPG 1489          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A0L0NL35_TOLOC (Putative helicase mot1 n=2 Tax=Tolypocladium TaxID=29909 RepID=A0A0L0NL35_TOLOC)

HSP 1 Score: 103 bits (258), Expect = 3.970e-24
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            + ++VITSY+V R D D+L +  W ++VLDE H+++NP  +  +A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1412 KTDIVITSYDVCRNDTDILEEHNWNYMVLDEGHLIKNPKAKITQAVKRLVSNHRLILTGTPIQNNVLELWSLFDFLMPG 1490          
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A0C3NT19_PISTI (Helicase ATP-binding domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3NT19_PISTI)

HSP 1 Score: 103 bits (257), Expect = 5.400e-24
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    7 NVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
            +VVITSY V+R D   L D  WL+ VLDE HV+RN  T+  KA +A+++ HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1454 DVVITSYEVVRNDISSLEDINWLYCVLDEGHVIRNAKTKLTKAVKAIQAQHRLILSGTPIQNNVLELWSLFDFLMPG 1530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J4R7_9PHAE2.990e-3989.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI1.040e-3888.61Essential abundant protein involved in regulation ... [more]
A0A7S0BDZ4_9RHOD1.210e-2457.69Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1B7N6B0_9AGAM2.130e-2459.49Uncharacterized protein n=2 Tax=Rhizopogon TaxID=5... [more]
S3C1C1_OPHP12.900e-2456.96Tata-binding protein-associated factor mot1 n=1 Ta... [more]
A0A3D8RBA2_9HELO3.960e-2458.23Putative MOT1-transcriptional accessory protein n=... [more]
G4N3K7_MAGO73.960e-2459.49TATA-binding protein-associated factor MOT1 n=7 Ta... [more]
A0A1W2TMP8_ROSNE3.960e-2459.74Putative tata-binding protein-associated factor mo... [more]
A0A0L0NL35_TOLOC3.970e-2456.96Putative helicase mot1 n=2 Tax=Tolypocladium TaxID... [more]
A0A0C3NT19_PISTI5.400e-2462.34Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112784contigH-elongata_contig112784:68..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.5e-33
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.4340272-CDS-H-elongata_contig112784:67..2411622929649.4340272-CDS-H-elongata_contig112784:67..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112784 68..241 -
1691679105.064762-CDS-H-elongata_contig112784:67..2411691679105.064762-CDS-H-elongata_contig112784:67..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112784 68..241 -
1622929649.451062-CDS-H-elongata_contig112784:735..8011622929649.451062-CDS-H-elongata_contig112784:735..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112784 736..801 -
1691679105.0757923-CDS-H-elongata_contig112784:735..8011691679105.0757923-CDS-H-elongata_contig112784:735..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112784 736..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112784.1045.1prot_H-elongata_contig112784.1045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112784 68..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112784.1045.1

>prot_H-elongata_contig112784.1045.1 ID=prot_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALR
SDHRLGLTGTPIQNSVLELWSLFQFLMPG*
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mRNA from alignment at H-elongata_contig112784:68..801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112784.1045.1 ID=mRNA_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=734bp|location=Sequence derived from alignment at H-elongata_contig112784:68..801- (Himanthalia elongata Himel1 dioecious)
CGAGCCAACGTGGTTATCACGTCGTACAACGTTCTTAGGATGGACGCCGA CGTGCTACGTGATCAGGTAGTAGAGGGGGGCCACTGTCCGAATCGCCTCA GTTGTTTGCCCCCGCGTGCTTGCACTTGGATGTGCCTTGGTGTGCCTGAA TGTGTCTGTTCAATACTGTGTAGCGGTGTGTTTCATCTGGAAATGTTGCT CTTAGCCGTATTCGTCTAACTTGGGCGCTCGACGCACGCGAAGAATGCCC CCCGGCTTAGACCGTGTCAGAATCTCTCGGAGCGGGTGCGTCGAACGCGC CGTGCGCATGGCGTAGACGTTTTATTTTATTTTATTTCTGTGATGATGTG GCACGCCCGATGAGAAGTGCTCAATATACTTGCTTTTACGACACCGTTTT CTTTGGAGCGTAGGAGATAGCAGATGATGGTTGTTTCCATCTTACCTCTA CATGGCCCATCCGCCGATATGTTGCCGCTTCGTTCAACCCAAAACCATTG CATGCACCGCTTCCTGTCGGAAACATCGGCGCCACGGTTGGAAACATTTT GTTTTTGCAGGGCTGGTTGTTCCTTGTTCTGGACGAGGCGCACGTCTTGC GCAACCCCGCTACTCGCACCGCCAAGGCCGCGAGGGCCTTAAGGTCCGAC CACCGCCTGGGACTCACGGGGACGCCCATCCAGAATTCGGTGCTGGAATT GTGGTCGCTGTTCCAGTTTCTCATGCCGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112784:68..801-

>mRNA_H-elongata_contig112784.1045.1 ID=mRNA_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig112784:68..801- (Himanthalia elongata Himel1 dioecious)
CGAGCCAACGTGGTTATCACGTCGTACAACGTTCTTAGGATGGACGCCGA
CGTGCTACGTGATCAGCGAGCCAACGTGGTTATCACGTCGTACAACGTTC
TTAGGATGGACGCCGACGTGCTACGTGATCAGGGCTGGTTGTTCCTTGTT
CTGGACGAGGCGCACGTCTTGCGCAACCCCGCTACTCGCACCGCCAAGGC
CGCGAGGGCCTTAAGGTCCGACCACCGCCTGGGACTCACGGGGACGCCCA
TCCAGAATTCGGTGCTGGAATTGTGGTCGCTGTTCCAGTTTCTCATGCCG
GGGTGAGGCTGGTTGTTCCTTGTTCTGGACGAGGCGCACGTCTTGCGCAA
CCCCGCTACTCGCACCGCCAAGGCCGCGAGGGCCTTAAGGTCCGACCACC
GCCTGGGACTCACGGGGACGCCCATCCAGAATTCGGTGCTGGAATTGTGG
TCGCTGTTCCAGTTTCTCATGCCGGGGTGA
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