mRNA_H-elongata_contig112783.1044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112783.1044.1
Unique NamemRNA_H-elongata_contig112783.1044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112783.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112783contigH-elongata_contig112783:1257..1823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112783.1044.1prot_H-elongata_contig112783.1044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112783 1377..1823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.3230247-UTR-H-elongata_contig112783:1256..13761622929649.3230247-UTR-H-elongata_contig112783:1256..1376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112783 1257..1376 +
1691679105.0283136-UTR-H-elongata_contig112783:1256..13761691679105.0283136-UTR-H-elongata_contig112783:1256..1376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112783 1257..1376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.3465714-CDS-H-elongata_contig112783:1376..15071622929649.3465714-CDS-H-elongata_contig112783:1376..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112783 1377..1507 +
1691679105.0375898-CDS-H-elongata_contig112783:1376..15071691679105.0375898-CDS-H-elongata_contig112783:1376..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112783 1377..1507 +
1622929649.3612902-CDS-H-elongata_contig112783:1567..18231622929649.3612902-CDS-H-elongata_contig112783:1567..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112783 1568..1823 +
1691679105.054209-CDS-H-elongata_contig112783:1567..18231691679105.054209-CDS-H-elongata_contig112783:1567..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112783 1568..1823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112783.1044.1

>prot_H-elongata_contig112783.1044.1 ID=prot_H-elongata_contig112783.1044.1|Name=mRNA_H-elongata_contig112783.1044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSGPSYVDPGYALCVQQAKDTEVKDCTTGESSGKLTAMSAVSDSGERCIL
YLYPFLLNERAKCIFFTYCDNFSSDKGPSRNSLGFHTYYAENRDEESYSV
ILMVCRFNLVEVVAIELSNFTPAQRKCSD
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mRNA from alignment at H-elongata_contig112783:1257..1823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112783.1044.1 ID=mRNA_H-elongata_contig112783.1044.1|Name=mRNA_H-elongata_contig112783.1044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at H-elongata_contig112783:1257..1823+ (Himanthalia elongata Himel1 dioecious)
CATACACCTCGTTTATCCCTTCCTCTTTATCTATGGAATAAATGACGTCA
CGGCGTGGTGTCCTGCAACATGAAGTATTTGAATAATGCTATTCGAATAA
TGGTATTCGAATAATGGTGAATGTCAGGCCCTTCTTATGTGGACCCAGGG
TATGCATTATGCGTGCAGCAAGCGAAGGACACTGAAGTGAAGGACTGTAC
GACAGGAGAGTCGTCGGGAAAACTCACTGCCATGTCAGCCGTTTCAGATT
CGTCACAGTATCTAGGTTCGGTGGCACAATCGGCATGGAAGAACGCGGTG
GTGGAGAAGAGGGGGGAACGGTGCATTTTATATTTATATCCTTTTTTGCT
TAATGAGCGAGCCAAATGCATTTTTTTTACGTATTGCGATAACTTTAGCA
GCGACAAGGGGCCAAGCCGAAACAGCCTGGGCTTCCACACATACTACGCA
GAAAATCGAGACGAGGAGAGTTATTCAGTAATACTTATGGTTTGCAGATT
TAATCTTGTAGAAGTAGTTGCAATCGAGCTCTCCAATTTCACCCCAGCCC
AGCGAAAATGTTCTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig112783:1257..1823+

>mRNA_H-elongata_contig112783.1044.1 ID=mRNA_H-elongata_contig112783.1044.1|Name=mRNA_H-elongata_contig112783.1044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig112783:1257..1823+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGCCCTTCTTATGTGGACCCAGGGTATGCATTATGCGTGCAGCA
AGCGAAGGACACTGAAGTGAAGGACTGTACGACAGGAGAGTCGTCGGGAA
AACTCACTGCCATGTCAGCCGTTTCAGATTCATGTCAGGCCCTTCTTATG
TGGACCCAGGGTATGCATTATGCGTGCAGCAAGCGAAGGACACTGAAGTG
AAGGACTGTACGACAGGAGAGTCGTCGGGAAAACTCACTGCCATGTCAGC
CGTTTCAGATTCGGGGGAACGGTGCATTTTATATTTATATCCTTTTTTGC
TTAATGAGCGAGCCAAATGCATTTTTTTTACGTATTGCGATAACTTTAGC
AGCGACAAGGGGCCAAGCCGAAACAGCCTGGGCTTCCACACATACTACGC
AGAAAATCGAGACGAGGAGAGTTATTCAGTAATACTTATGGTTTGCAGAT
TTAATCTTGTAGAAGTAGTTGCAATCGAGCTCTCCAATTTCACCCCAGCC
CAGCGAAAATGTTCTGACGGGGGAACGGTGCATTTTATATTTATATCCTT
TTTTGCTTAATGAGCGAGCCAAATGCATTTTTTTTACGTATTGCGATAAC
TTTAGCAGCGACAAGGGGCCAAGCCGAAACAGCCTGGGCTTCCACACATA
CTACGCAGAAAATCGAGACGAGGAGAGTTATTCAGTAATACTTATGGTTT
GCAGATTTAATCTTGTAGAAGTAGTTGCAATCGAGCTCTCCAATTTCACC
CCAGCCCAGCGAAAATGTTCTGAC
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