prot_H-elongata_contig112759.1043.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112759.1043.1
Unique Nameprot_H-elongata_contig112759.1043.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length139
Homology
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A6H5JFK6_9PHAE (START domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFK6_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 3.400e-66
Identity = 107/140 (76.43%), Postives = 116/140 (82.86%), Query Frame = 0
Query:    1 MSRETKILYQLRCGDDEFVRIVWGSFRAAGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFREAVDG-TIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLANTAK 139
            MSRETKILYQ+ C + E +RI WGSF+AAGVAWARDFCFLQH   +TDP TGERLF VV+GSIER EVPDME LCKRIRS +K SG VFRE  DG  +RA+YVVNVNP GWIPSKIVNIICTNQAMNVSRV N L  TAK
Sbjct:  182 MSRETKILYQIPCEEGELIRISWGSFKAAGVAWARDFCFLQHAAASTDPATGERLFCVVSGSIERPEVPDMEKLCKRIRSTVKTSGLVFREPKDGGPMRATYVVNVNPNGWIPSKIVNIICTNQAMNVSRVKNKLHETAK 321          
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: L8H5Y9_ACACA (START domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5Y9_ACACA)

HSP 1 Score: 55.5 bits (132), Expect = 2.860e-6
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 0
Query:   19 VRIVWGSFRAAGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFR----EAVDGTIRA--SYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSL 134
            VR+    F A     +RDF  +       +  T + LF  V  SIER ++P  E     +R  +K+SG+V +    + V G  R   +Y+V +NP GWIP+ +VN +  +Q + ++ + N++
Sbjct:  137 VRVCNYKFSAPWPVASRDFVIIAG-----EKITDDGLFVTVVNSIERDDIPVEEGF---VRGMLKSSGFVIKPLDNDPVTGKPRCEITYLVQLNPMGWIPTIVVNTVNVSQPLCINTLKNAI 250          
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A7S4DQV3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DQV3_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 4.600e-5
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 0
Query:   29 AGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVP-DMEALCKRIRSKIKNSGYVFREAVDGTIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRV 130
            AGV  ARDF F +   T  D        A +       + P D       IR  I  SGY+ +     T   +Y+V V+P GW+P+ +V ++  +QA+NV+R+
Sbjct:  116 AGVT-ARDFTFHELIVTLNDNSV-----AAICWEEPWKDYPMDTSYFPSYIRGSIIMSGYLAKPLTPNTCEVTYLVQVDPKGWLPAWVVEVVAPDQALNVTRL 212          
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A7S4MT69_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MT69_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 6.670e-5
Identity = 25/74 (33.78%), Postives = 42/74 (56.76%), Query Frame = 0
Query:   62 SIERSEVPDMEALCKRIRSKIKNSGYVFREAVDGTIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLA 135
            S+   + PD +     +R  +  SGY  +   DGT  A+YVV ++P GWIP+ IVN++   Q + ++++   LA
Sbjct:  132 SVVDDDAPDAKGF---VRGDVFASGYWLKPNGDGTSTAAYVVQIDPKGWIPTAIVNVVAKKQPLVLAKMREYLA 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFK6_9PHAE3.400e-6676.43START domain-containing protein n=2 Tax=Ectocarpus... [more]
L8H5Y9_ACACA2.860e-630.33START domain containing protein n=1 Tax=Acanthamoe... [more]
A0A7S4DQV3_9EUKA4.600e-532.04Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4MT69_9EUKA6.670e-533.78Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002913START domainPFAMPF01852STARTcoord: 25..129
e-value: 1.1E-6
score: 28.2
IPR002913START domainPROSITEPS50848STARTcoord: 1..117
score: 12.621
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 2..139
e-value: 7.7E-20
score: 73.5
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 4..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112759contigH-elongata_contig112759:50..2000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112759.1043.1mRNA_H-elongata_contig112759.1043.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112759 35..2000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112759.1043.1 ID=prot_H-elongata_contig112759.1043.1|Name=mRNA_H-elongata_contig112759.1043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MSRETKILYQLRCGDDEFVRIVWGSFRAAGVAWARDFCFLQHCCTTTDPD
TGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFREAVDGTIRAS
YVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLANTAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002913START_lipid-bd_dom
IPR023393START-like_dom_sf