mRNA_H-elongata_contig112724.1041.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.110e-87 Identity = 167/244 (68.44%), Postives = 192/244 (78.69%), Query Frame = 1
Query: 1 QDVVFASLKLTTSSSSESARKRAVTIAEQVVGKLLEAPASDATVDRIYVGSYHQSKLVVEVDFHLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTGSGRIGEGSKDLLQGVVGGTASSASKVTHALDRVVRSAGGLRS-ASETMESAK 729
QDVVFASL T SS +E AR RA+ + VVG LL+APA+DATVDRIY+G Y Q ++ V VDFHL + V +L+SSKP ADG EEKDE GFGASLAM+PLGA+GGV WGLLS+ G G+ANASPTF FD + EHYYGS QAV +VMSFVKQGV QAYKV+GH+DILGDPLSLG NISSGV GFV KTG+G IGEGSKDL++GVVGGTASSASK+T ALD VR AG + + A MES K
Sbjct: 2515 QDVVFASLNWTNSSPAE-ARARAIADTQGVVGNLLQAPAADATVDRIYIGEYFQEEIEVAVDFHLGT---KVAALLSSKPPADGDEEKDEGGFGASLAMMPLGAVGGVVWGLLSSFGAGIANASPTFNFDAYELEHYYGSKTQAVTLVVMSFVKQGVVQAYKVLGHIDILGDPLSLGMNISSGVIGFVTKTGAGHIGEGSKDLVKGVVGGTASSASKMTDALDNFVREAGCMDAEAPSGMESTK 2754
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A6H5KB17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB17_9PHAE) HSP 1 Score: 292 bits (747), Expect = 3.700e-87 Identity = 162/229 (70.74%), Postives = 185/229 (80.79%), Query Frame = 1
Query: 4 DVVFASLKLTTSSSSESARKRAVTIAEQVVGKLLEAPASDATVDRIYVGSYHQSKLVVEVDFHLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTGSGRIGEGSKDLLQGVVGGTASSASKVTHALDRVVRSAG 690
DVVFASL T SS +E AR RA+ + VVG LL+APA+DATVDRIY+G Y Q ++ V VDFHL + V +L+SSKPSADG EEKDE GFGASLAM+PLGA+GGV WGLLS+ G G+ANASPTF FD + EHYYGS QAV +VMSFVKQGV QAYKV+GH+DILGDPLSLG NISSGV GFV KTG+G IGEGSKDL++GVVGGTASSASK+T ALD VR AG
Sbjct: 1420 DVVFASLNWTNSSPAE-ARARAIADTQGVVGNLLQAPAADATVDRIYIGEYFQEEIEVAVDFHLGT---KVAALLSSKPSADGDEEKDEGGFGASLAMMPLGAVGGVVWGLLSSFGAGIANASPTFNFDAYELEHYYGSKTQAVTQVVMSFVKQGVVQAYKVLGHIDILGDPLSLGMNISSGVIGFVTKTGAGHIGEGSKDLVKGVVGGTASSASKMTDALDNFVREAG 1644
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A7S2GN42_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN42_9STRA) HSP 1 Score: 104 bits (259), Expect = 4.900e-22 Identity = 71/200 (35.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query: 115 ASDATVDRIYVGSYHQSKLV-VEVDFHLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTGSGRIGE------GSKDLLQGVVGGTASSASKVTHALDRVVRSAGG 693
A A RI Y S L+ +E +H + L + + S + D + + ++ G + MG W +L +G LA+ +PTF F+E+ +G + MS VKQGV Q YKVVG M++LGDP+SL N+ GV+ F +KTG+ +GE G K L QGVVGGT S +K+T A D ++ + G
Sbjct: 197 ARHAIQHRIKAPHYTNSGLIYIETLYHSSIVVQLEVMVGSRNLNTDDLADDEQRG---------VWLMGSSLWSMLVVLGSSLAHINPTFQFNELKLADSFGQRWDLASSIFMSLVKQGVAQGYKVVGSMELLGDPVSLVSNMGVGVYQFFRKTGADMLGESETRGEGVKHLFQGVVGGTFGSVAKITGAADTLLSAVTG 387
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 5.880e-20 Identity = 66/191 (34.55%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 139 IYVGSYHQSKLVVEVDFHLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKT------GSGRIGEGSKDLLQGVVGGTASSASKVTHALDRVVRSAGG 693
+YV ++ S +VV V+ L + + P A +E+ + + G ++ +GG +LS +G +A+ +PTFVFDE+ HY GS +V + +Q V Q YKVVG M++LGDPLSL G + V F KT + +G G+K L++G+VGGT SA+K+T +L+ ++R G
Sbjct: 1060 VYVEAFRHSTIVVRVE--------LWVGQAALSPDAAALEDPETTTGGLTV-------LGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGSLEGMIRGLSG 1235
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A7R9UEM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEM8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.820e-17 Identity = 66/199 (33.17%), Postives = 103/199 (51.76%), Query Frame = 1
Query: 112 PASDATVDRIYVGSYHQSKLVVEVDFHLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTG------SGRIGEGSKDLLQGVVGGTASSASKVTHALDRVVRSAG 690
P + IYV H +V++++ LA+ S P+A+ + +S F +S L +G G L+ + A+ASP FVF E + ++++G V+ L + V QGV Q+YK+ G M++LGDPL+L + G+ F + TG S GEG + L QGVVGG A SASK++ L+ ++ G
Sbjct: 2016 PLGHVSSGLIYVEHLHHGPIVLQLEI-LANIGDQNAIATSLDPAANPLSL--DSPF-SSEDETALALLGNQVLGALTALVSTFAHASPIFVFGECEVDNFFGQRKDLVRTLTLGLVHQGVAQSYKLFGSMEVLGDPLALANKVGEGMVQFFRATGAELRGESDFKGEGLRRLAQGVVGGAAQSASKISGTLEEMISGLG 2210
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 5.820e-16 Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 358 LANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKT------GSGRIGEGSKDLLQGVVGGTASSASKVTHALDRVVRSAGG 693
+A+ +PTFVFDE+ HY GS +V + +Q V Q YKVVG M++LGDPLSL G + V F KT + +G G+K L++G+VGGT SA+K+T +L+ ++R G
Sbjct: 2779 IAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKLLVKGLVGGTFGSAAKITGSLEGMIRGLSG 2896
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A835YJU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU6_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.220e-12 Identity = 66/201 (32.84%), Postives = 94/201 (46.77%), Query Frame = 1
Query: 190 HLASFYSLVMSLISSKPSADGIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQ---------------------------AYKVVGHMDILGDPLSLGGNISSGVFGFVKKTGSGRIGE------GSKDLLQGVVGGTASSASKVTHALDRVVRSAGG 693
H FY + SL +K A+ E+ D +G L +GG + +G LA SPTFVFDE+ HY+GS + L V+QGV Q +YKVVG M++LGDPL+L +S V F++ T + GE G++ L+ GVVGG SA+K+ +L+ V+R G
Sbjct: 271 HALPFYRKI-SLTFNKTLAN--EDPDAAG--------GLAVLGGSFLSAVGVLGGTLARISPTFVFDELLVTHYFGSARELAAALARGLVQQGVAQGYKXXXXXXXXXXXXXXXXXXXPGSERSYKVVGSMELLGDPLALVNKLSDSVLQFLRTTQAEFRGEEPTFGAGARMLVSGVVGGAFGSAAKIAGSLEDVIRGLSG 460
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: W7U3K2_9STRA (Ph domain containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3K2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.690e-10 Identity = 60/214 (28.04%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 106 EAPASDATVDR-IYVGSYHQSKLVVEVD-------FHLASFYSLVMSLISSKPSAD-GIEEKDESGFGASLAMVPLGAMGGVAWGLLSTVGVGLANASP-TFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTGSGRIG------EGSKDLLQGVVGGTASSASKVTHALDRVVRSAGGLR 699
+A S+A R +Y+ +H S L+V ++ F + L ++ G++++ + + L ++ G + LL+ + LA S T VF+E+ HY+GS +V+S +Q + Q+YK++G MD+LG+PL+L SGV F ++T + +G EG + L + V+GG SS SK+T + ++ G+R
Sbjct: 3893 DAALSEAVGQRLVYIELFHHSSLIVGMELVPGGGNFPSRKERAKQTGLPGNRMDGSLGLDQELDEALVSGLELIGTGVVQ-----LLADMARSLAQLSGLTLVFNELLFTHYFGSHYDLGHIVVLSLRQQAITQSYKLLGAMDLLGNPLNLFLGFGSGVVEFFRRTQAELVGDADSKGEGLRRLAKAVIGGPFSSVSKITGTVASLLEEVVGVR 4101
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A024TVM9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVM9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.130e-9 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 364 NASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTG------SGRIGEGSKDLLQGVVGGTASSASKVTHALDR 672
+ SPTF F I + H + + + LV ++ ++ V QAYK+VG MD+LG+P+ + G+I SG+ F+K TG S GEG K L + V SKVT +LD+
Sbjct: 2069 SGSPTFRFAPITKRHCFTTQSRLQSQLVQNYTREVVVQAYKLVGSMDLLGNPVGVVGDIGSGIISFLKVTGDELTGDSKTRGEGVKILGKTVATSATGFVSKVTGSLDK 2177
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Match: A0A3L6VIP2_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VIP2_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.510e-8 Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 364 NASPTFVFDEIDREHYYGSTVQAVQFLVMSFVKQGVNQAYKVVGHMDILGDPLSLGGNISSGVFGFVKKTG------SGRIGEGSKDLLQGVVGGTASSASKVTHALDR 672
+ SPTF F I + H + + + L+ ++ ++ V QAYK+VG MD+LG+P+ L G++ SG+ F K TG S GEG K L + V SKVT +LD+
Sbjct: 799 SGSPTFRFAPITKRHCFTTQSRLQSQLIQNYTREVVVQAYKLVGSMDLLGNPVGLVGDLGSGIISFFKVTGDELTGDSKTRGEGVKILGKTVATSATGFVSKVTGSLDK 907 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112724.1041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112724.1041.1 >prot_H-elongata_contig112724.1041.1 ID=prot_H-elongata_contig112724.1041.1|Name=mRNA_H-elongata_contig112724.1041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp QDVVFASLKLTTSSSSESARKRAVTIAEQVVGKLLEAPASDATVDRIYVGback to top mRNA from alignment at H-elongata_contig112724:285..2072- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112724.1041.1 ID=mRNA_H-elongata_contig112724.1041.1|Name=mRNA_H-elongata_contig112724.1041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1788bp|location=Sequence derived from alignment at H-elongata_contig112724:285..2072- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112724:285..2072- >mRNA_H-elongata_contig112724.1041.1 ID=mRNA_H-elongata_contig112724.1041.1|Name=mRNA_H-elongata_contig112724.1041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig112724:285..2072- (Himanthalia elongata Himel1 dioecious)back to top |