mRNA_H-elongata_contig1127.1040.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1127.1040.1
Unique NamemRNA_H-elongata_contig1127.1040.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1127.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1127contigH-elongata_contig1127:16137..16808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.7579198-CDS-H-elongata_contig1127:16137..162901622929648.7579198-CDS-H-elongata_contig1127:16137..16290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 16138..16290 -
1691679104.7820325-CDS-H-elongata_contig1127:16137..162901691679104.7820325-CDS-H-elongata_contig1127:16137..16290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 16138..16290 -
1622929648.776382-CDS-H-elongata_contig1127:16730..168081622929648.776382-CDS-H-elongata_contig1127:16730..16808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 16731..16808 -
1691679104.793329-CDS-H-elongata_contig1127:16730..168081691679104.793329-CDS-H-elongata_contig1127:16730..16808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 16731..16808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1127.1040.1prot_H-elongata_contig1127.1040.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1127 16138..16808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1127.1040.1

>prot_H-elongata_contig1127.1040.1 ID=prot_H-elongata_contig1127.1040.1|Name=mRNA_H-elongata_contig1127.1040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
KEELTASWVLVEELRNQLAATQQTLKATEEELEATRTIVAEQTATERTLL
LEAEQTKRSLAIAEEDVEGLRDKIARQ
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mRNA from alignment at H-elongata_contig1127:16137..16808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1127.1040.1 ID=mRNA_H-elongata_contig1127.1040.1|Name=mRNA_H-elongata_contig1127.1040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig1127:16137..16808- (Himanthalia elongata Himel1 dioecious)
AAGGAGGAACTGACGGCGTCATGGGTTTTGGTGGAGGAACTTCGCAACCA
GCTAGCGGCCACTCAGCAAACCCTGAAGGTCAAACCGCCCTCTCTTCTCG
CCTTACCTTCTCGTATTTTTAGTTCAAAAACAATCTCACCCGTCTCTCTC
TTTGTCTCTGTCATAGTCTTTCTGTCTCTTTATCTGTATTAATTTTTAGT
TCATGTTTATTACATTCCGGGTCTTAGAAAAAAGTATATATATAAATATA
TATTTAGATTATAACAAAAAAAAAAAATCGCCGTTGTCTTTCTCACCCCT
TTTCTGGAAGACACATGGTTTTTGAAGTTTTTCTTCCGTGCCGAGAATGC
CACAAGATAACAGACACTGGAACCTCGCTCCTCCACCCGAAAAAATAGAG
AAAGTCAAGAACTTCCCGAGAACTTTTGGAAAGGGTTTCGCACAAATTCT
ATGGGCATATTATAGATGACTTGCTCGGGTGAGCTTCACGTGCGCATGTC
GTCCCGTCCGACGAGCAGGCTACGGAGGAAGAGCTCGAGGCGACGAGAAC
TATCGTGGCGGAGCAAACGGCCACGGAACGCACGCTGCTTCTAGAGGCGG
AACAGACCAAAAGGTCCCTTGCCATCGCCGAGGAAGATGTGGAGGGACTT
CGTGACAAGATAGCCCGTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig1127:16137..16808-

>mRNA_H-elongata_contig1127.1040.1 ID=mRNA_H-elongata_contig1127.1040.1|Name=mRNA_H-elongata_contig1127.1040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig1127:16137..16808- (Himanthalia elongata Himel1 dioecious)
AAGGAGGAACTGACGGCGTCATGGGTTTTGGTGGAGGAACTTCGCAACCA
GCTAGCGGCCACTCAGCAAACCCTGAAGAAGGAGGAACTGACGGCGTCAT
GGGTTTTGGTGGAGGAACTTCGCAACCAGCTAGCGGCCACTCAGCAAACC
CTGAAGGCTACGGAGGAAGAGCTCGAGGCGACGAGAACTATCGTGGCGGA
GCAAACGGCCACGGAACGCACGCTGCTTCTAGAGGCGGAACAGACCAAAA
GGTCCCTTGCCATCGCCGAGGAAGATGTGGAGGGACTTCGTGACAAGATA
GCCCGTCAGGCTACGGAGGAAGAGCTCGAGGCGACGAGAACTATCGTGGC
GGAGCAAACGGCCACGGAACGCACGCTGCTTCTAGAGGCGGAACAGACCA
AAAGGTCCCTTGCCATCGCCGAGGAAGATGTGGAGGGACTTCGTGACAAG
ATAGCCCGTCAG
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