mRNA_H-elongata_contig1127.1038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1127.1038.1
Unique NamemRNA_H-elongata_contig1127.1038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1127.1038.1 vs. uniprot
Match: D8LDX8_ECTSI (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX8_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.630e-22
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:   51 CARDAEALHRGTNEAAKRIATLACTAEQEALKRACETEENVDELASAVGDLESTHMSTLGHCVSHIHNHIEKACRVQGPSGGTPERKRYPRPDKFSTTRPLGEIVSDFR 377
            C    E+L  G  EAA+R+A+LA +A++EA   A E  E V  LA+ V  LES H S+LG CV HI +H+E+AC V+ PSGGTP +K YPRP+ FSTTRP  EI+S+ R
Sbjct:  875 CKAATESLRLGNGEAAERVASLASSADREAAGLAQEGGEQVGVLAACVEGLESDHSSSLGQCVLHIEDHVEEACAVRDPSGGTPGKKSYPRPEAFSTTRPHEEIMSEIR 983
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1127.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDX8_ECTSI8.630e-2253.21Kinesin motor domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1127contigH-elongata_contig1127:9170..11563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size1318
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1127.1038.1prot_H-elongata_contig1127.1038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1127 9610..11067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.6073382-UTR-H-elongata_contig1127:9169..96091622929648.6073382-UTR-H-elongata_contig1127:9169..9609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 9170..9609 -
1691679104.7223284-UTR-H-elongata_contig1127:9169..96091691679104.7223284-UTR-H-elongata_contig1127:9169..9609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 9170..9609 -
1622929648.6852522-UTR-H-elongata_contig1127:11067..111121622929648.6852522-UTR-H-elongata_contig1127:11067..11112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 11068..11112 -
1691679104.7639375-UTR-H-elongata_contig1127:11067..111121691679104.7639375-UTR-H-elongata_contig1127:11067..11112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 11068..11112 -
1622929648.712955-UTR-H-elongata_contig1127:11393..115631622929648.712955-UTR-H-elongata_contig1127:11393..11563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 11394..11563 -
1691679104.7726924-UTR-H-elongata_contig1127:11393..115631691679104.7726924-UTR-H-elongata_contig1127:11393..11563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1127 11394..11563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.6347976-CDS-H-elongata_contig1127:9609..98941622929648.6347976-CDS-H-elongata_contig1127:9609..9894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 9610..9894 -
1691679104.732715-CDS-H-elongata_contig1127:9609..98941691679104.732715-CDS-H-elongata_contig1127:9609..9894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 9610..9894 -
1622929648.6493163-CDS-H-elongata_contig1127:10339..105951622929648.6493163-CDS-H-elongata_contig1127:10339..10595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 10340..10595 -
1691679104.744163-CDS-H-elongata_contig1127:10339..105951691679104.744163-CDS-H-elongata_contig1127:10339..10595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 10340..10595 -
1622929648.6688817-CDS-H-elongata_contig1127:10945..110671622929648.6688817-CDS-H-elongata_contig1127:10945..11067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 10946..11067 -
1691679104.7554183-CDS-H-elongata_contig1127:10945..110671691679104.7554183-CDS-H-elongata_contig1127:10945..11067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1127 10946..11067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1127.1038.1

>prot_H-elongata_contig1127.1038.1 ID=prot_H-elongata_contig1127.1038.1|Name=mRNA_H-elongata_contig1127.1038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
MSTLGHCVSHIHNHIEKACRVQGPSGGTPERKRYPRPDKFSTTRPLGEIV
SDFRNKGRAPLQSPRECRTAVPGDQGEASSSTASMELLGDLPDDAGARVE
VETSYVSIASLALESQFAGGDEVERKTGRFKDLSGNTSSVSSNPKEEGDA
STATMKADTGRGITKSSAAPAGERGVSHTGTRIPSPPLNEATNTSGSSQT
RANLKSRIPSRRSTRRTWAK*
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mRNA from alignment at H-elongata_contig1127:9170..11563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1127.1038.1 ID=mRNA_H-elongata_contig1127.1038.1|Name=mRNA_H-elongata_contig1127.1038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2394bp|location=Sequence derived from alignment at H-elongata_contig1127:9170..11563- (Himanthalia elongata Himel1 dioecious)
AGAAAAATCTCGCTGTGGTGTCGGCGACAATATGCAACTCGGCCGACGCC
TGCGCGAGAGATGCAGAGGCGTTGCACAGAGGCACAAACGAGGCCGCCAA
ACGCATCGCGACCTTGGCCTGCACGGCAGAACAAGAAGCATTGAAGAGAG
CATGCGAGACGGAAGAAAATGTACGGAATGCATCAACATTGCATCGCACA
CACCCCCCATTTGTGCGTTGTATATATATATATTACAAGCATTTCTTACC
CGTATGTGTGTGTATTGAAGGCGTGGTGGGGAGGGATGACAAAGCGGTAT
GTGTCTCTTTCGAAACCCCCACGACTTTTGAGTTAGCATCCGCGGAACCT
CGAAATACCATCACGATGTCTGCCTCATCTCGCCGTTCCCATCACCAGGC
TGTTTTCCGCCTTCCCGCATTTGATGCCGCTACACTCTCCCCCCCCAAAA
GGTGGACGAGCTCGCATCAGCGGTCGGAGACCTGGAGTCGACCCACATGT
CTACCCTTGGTCATTGTGTATCTCATATTCACAACCACATCGAAAAGGCG
TGCAGGGTACAGGGACCATCCGGAGGAACCCCAGAGAGAAAGCGCTACCC
TCGTCCTGACAAGTTCAGGTGAAACACGATGCTTGTGATTTTTCAAGCCA
CCTTTTCTTATCTACAGCACATTTTCGACGTCAATGGCAAGCGGTTTCTT
ACACCACTGTCCCCTCAAACTTTGTTGGCAGCCTCTAGGATTTGGGGGTA
GTGGTCGCACGCAGCGCGATGTATCTAATTGCTTGAATACGACCAGGAAG
GCACTCTGGCATCGCGTTGGCGACGATCCTTACATTTCCATTCGCGCTTG
GTTGTTTCTCGGTACAGTTTGTCACAATCCCCCGCTGTCCCACAATCCCT
CGTTCAATCCCCCGTCGAACGCATCCCAAAACCCGCCATCTGCGGGCGGG
CCCTTGAAAAACTCACAGCACGACGAGGCCACTGGGGGAAATCGTGTCTG
ACTTCAGAAACAAAGGAAGGGCGCCGCTGCAATCTCCGCGGGAATGCCGC
ACCGCCGTGCCTGGCGACCAGGGCGAGGCCTCGTCTTCCACCGCTTCGAT
GGAGCTCCTCGGGGATTTGCCGGACGACGCCGGAGCAAGGGTCGAGGTGG
AGACCTCCTACGTGTCGATCGCATCCTTGGCGCTGGAAAGCCAGTTCGCG
GGTGGGGACGAGGTTGAACGTAAGGTAGGTGCATGCCGCCAGGTGGGCGG
CGGTGAAACGTTTCGCCTCCGTGTACGTCCCTGTGCCTCGAGAAGAAGGG
AGATGAGGAAGTGGATGAACTTGGTGCTGAGGAGATGGTTTGCTTCGTCT
TGACCTGTGCGTGTCTTGGCCACGTTGGTATATCTTATATGTGTCGCGCT
GAGCTGATTAGTTGCACTGCTTTGATATTTATTTCCGGGTGACCTGGCAT
TGAATGGCCCGTCCCTTGTTTCCCAGTATATGATAAGATACAAGATGTAA
TCTGTGTCCCCCGCGTTGTGTGACATACATGCCTCAATTCTGCGGTGTAG
AGTGTATGATGCATGCATTTTTCCTTGATAACTGATTTCCCCCTTAACCC
CTCCACGTCCCCGGACGCTTGATGCCTTTCTCTCTCTTTCTTCTTTCTGC
CTTCTCTTCGACGGTAAAGACGGGTAGATTCAAGGATTTGAGCGGGAATA
CCTCCTCCGTTAGCAGCAACCCTAAGGAGGAGGGCGATGCTTCCACCGCC
ACGATGAAGGCTGACACAGGTCGGGGGATCACCAAGTCCTCGGCGGCTCC
CGCGGGGGAAAGAGGCGTAAGCCATACAGGGACAAGAATCCCTAGCCCCC
CCCTCAACGAGGCCACCAACACGAGCGGTTCTTCTCAAACGAGGGCCAAT
TTAAAGAGCAGGATTCCTTCTAGGCGGAGCACACGTCGTACGTGGGCGAA
GTAGAAACTAGGCGACAGGATATCAAAAGTTTCTTGCGATAGCTCGGGAA
GAGTGGGCCTACCCGTGTTTTAAAATCGGGCCAATAGATTGAGTCGAGGG
GGCGCAGCAAGCACTCGGTTCGAAGGAGCAGCAAACGGGCCATCTCTTTT
CAGGCTTCGTTATGCCTTATTCTCTCCCTGCTATGTTGTGCTTCGAGGCG
GGGCGGGGGTTCATCTAGGGACCTCTTTCCGTGCGATGATGGCTCAGTAG
CACGTTACTTCAGTGTATAAAATAATGAAAATGGGCGACGGGTCACGTCA
TGACGCTCCGTAGAGAGGGAGAAAGTTGAGAGAAGCAGTGGCGTTCCATT
GAGAGAGGAGCTAGAAAAAAGATACTTGGAAATAATGAAGGGGGCATATA
TTTTCACGCATACCTACATAGTCGCTGGTTTAATATTAATAATA
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Coding sequence (CDS) from alignment at H-elongata_contig1127:9170..11563-

>mRNA_H-elongata_contig1127.1038.1 ID=mRNA_H-elongata_contig1127.1038.1|Name=mRNA_H-elongata_contig1127.1038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig1127:9170..11563- (Himanthalia elongata Himel1 dioecious)
ATGTCTACCCTTGGTCATTGTGTATCTCATATTCACAACCACATCGAAAA
GGCGTGCAGGGTACAGGGACCATCCGGAGGAACCCCAGAGAGAAAGCGCT
ACCCTCGTCCTGACAAGTTCAGATGTCTACCCTTGGTCATTGTGTATCTC
ATATTCACAACCACATCGAAAAGGCGTGCAGGGTACAGGGACCATCCGGA
GGAACCCCAGAGAGAAAGCGCTACCCTCGTCCTGACAAGTTCAGCACGAC
GAGGCCACTGGGGGAAATCGTGTCTGACTTCAGAAACAAAGGAAGGGCGC
CGCTGCAATCTCCGCGGGAATGCCGCACCGCCGTGCCTGGCGACCAGGGC
GAGGCCTCGTCTTCCACCGCTTCGATGGAGCTCCTCGGGGATTTGCCGGA
CGACGCCGGAGCAAGGGTCGAGGTGGAGACCTCCTACGTGTCGATCGCAT
CCTTGGCGCTGGAAAGCCAGTTCGCGGGTGGGGACGAGGTTGAACGTAAG
CACGACGAGGCCACTGGGGGAAATCGTGTCTGACTTCAGAAACAAAGGAA
GGGCGCCGCTGCAATCTCCGCGGGAATGCCGCACCGCCGTGCCTGGCGAC
CAGGGCGAGGCCTCGTCTTCCACCGCTTCGATGGAGCTCCTCGGGGATTT
GCCGGACGACGCCGGAGCAAGGGTCGAGGTGGAGACCTCCTACGTGTCGA
TCGCATCCTTGGCGCTGGAAAGCCAGTTCGCGGGTGGGGACGAGGTTGAA
CGTAAGACGGGTAGATTCAAGGATTTGAGCGGGAATACCTCCTCCGTTAG
CAGCAACCCTAAGGAGGAGGGCGATGCTTCCACCGCCACGATGAAGGCTG
ACACAGGTCGGGGGATCACCAAGTCCTCGGCGGCTCCCGCGGGGGAAAGA
GGCGTAAGCCATACAGGGACAAGAATCCCTAGCCCCCCCCTCAACGAGGC
CACCAACACGAGCGGTTCTTCTCAAACGAGGGCCAATTTAAAGAGCAGGA
TTCCTTCTAGGCGGAGCACACGTCGTACGTGGGCGAAGTAGACGGGTAGA
TTCAAGGATTTGAGCGGGAATACCTCCTCCGTTAGCAGCAACCCTAAGGA
GGAGGGCGATGCTTCCACCGCCACGATGAAGGCTGACACAGGTCGGGGGA
TCACCAAGTCCTCGGCGGCTCCCGCGGGGGAAAGAGGCGTAAGCCATACA
GGGACAAGAATCCCTAGCCCCCCCCTCAACGAGGCCACCAACACGAGCGG
TTCTTCTCAAACGAGGGCCAATTTAAAGAGCAGGATTCCTTCTAGGCGGA
GCACACGTCGTACGTGGGCGAAGTAG
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