mRNA_H-elongata_contig11267.1035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11267.1035.1
Unique NamemRNA_H-elongata_contig11267.1035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11267.1035.1 vs. uniprot
Match: D8LBB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB8_ECTSI)

HSP 1 Score: 681 bits (1758), Expect = 1.550e-237
Identity = 330/527 (62.62%), Postives = 381/527 (72.30%), Query Frame = 3 
Query:   75 MTSLTTMEGDMRRSRERCPACARLQLEIETGQFVPGGRGDDKLYDA--------------------------FRSGGMRTRTDQDSAQHAWRPEEVICNHCLCSHESHEDTGPNGQRCCGLRREGPWDKVCEWCRSKKGCRAWARARPCPAQGT---------------EHACEMGAKGSYCTHCRCSCATHNPHRFDHRSNWVSRNLDTQRACGVCLACWSGWCVPKSGAKRKLLGATGEPEEPFARQWRPGRDGDVYVLTGLFDKLTGKLPEGSFAHAVFGSSLRYFRSFVSPLETLQVFHEAGVTSGERSASIGEAWSGGGSQYPPEKPAGSRKVVAAPIRQGAGAERHFSRRHGRRDHKWQWDMSRSPWSLMLLQKGRHALGVPREEAEEFEEAGIIAFPGHVVKHKDTVKNGGYGKTIGTLVLRSPEAAFVCLQVQRGLLEKAVRAAFDLGVELPPRFEQKGRFKFAIYEGDAWAMVGGTARNDAEHAVVCGRSAIPDGEPGEGFVRVAFNMRWGWQDD*RL 1532
            MT+ + ++ DMRR+++RCPACAR QL IE GQ+VPG     +LY                                   +      AQH  RPEE++C HCLCS+E+HEDTGPNGQRCCG  REG WD+VCE C++ + CRAWARAR CPA+                 E  C+   + ++C HC C CA  +PH F+ +SNW+S N + QRAC +CL CW+GWC+P SG KRKL+GAT EPEEPFARQWRPGRD DV+VLTGLFD+LTG LPE  F +AVFGSSLRYF+  +   E      EAGVT G+RS +IGEAWSGGGS YPPE+PAG+RKVVAAP+RQG GA RHFSR HGRRDH WQWDM +SPWSL L+ KGR ALGV  EEA EFEEAGIIAFPGHVVKHKD+VKNGGYGKTIGTLVLRSPE+AFVC+Q Q   L +AV  A +LGVELPPR  +KGRFKFAI E DAWAMVGGTARNDAEHAVVCGR  IP GEPGEGFVRVAFNMRWGWQDD R+
Sbjct:    1 MTNFS-LQADMRRAKDRCPACARQQLHIENGQYVPGDEVKGQLYTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNAYNALAQHEIRPEEIVCTHCLCSNENHEDTGPNGQRCCGGLREGLWDRVCELCKASESCRAWARARACPAEEAGRAPGEPNHAGNSTGEKPCKTEGRANFCMHCTCPCAQVHPHTFEDKSNWMSTNPEVQRACRICLPCWAGWCIPLSGTKRKLVGATMEPEEPFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGSAEAKHALKEAGVTPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRVHGRRDHNWQWDMLKSPWSLGLMAKGRLALGVSEEEANEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQGQGERLGRAVELAEELGVELPPRVAEKGRFKFAINELDAWAMVGGTARNDAEHAVVCGRKVIPAGEPGEGFVRVAFNMRWGWQDDRRV 526
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11267.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB8_ECTSI1.550e-23762.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11267contigH-elongata_contig11267:4217..6904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004500.1
Exons2
Model size2341
Cds size1452
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11267.1035.1prot_H-elongata_contig11267.1035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11267 5032..6830 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.3599594-UTR-H-elongata_contig11267:4216..50311622929648.3599594-UTR-H-elongata_contig11267:4216..5031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11267 4217..5031 -
1691679104.6355498-UTR-H-elongata_contig11267:4216..50311691679104.6355498-UTR-H-elongata_contig11267:4216..5031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11267 4217..5031 -
1622929648.41469-UTR-H-elongata_contig11267:6830..69041622929648.41469-UTR-H-elongata_contig11267:6830..6904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11267 6831..6904 -
1691679104.6623418-UTR-H-elongata_contig11267:6830..69041691679104.6623418-UTR-H-elongata_contig11267:6830..6904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11267 6831..6904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.3820217-CDS-H-elongata_contig11267:5031..59891622929648.3820217-CDS-H-elongata_contig11267:5031..5989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11267 5032..5989 -
1691679104.6446567-CDS-H-elongata_contig11267:5031..59891691679104.6446567-CDS-H-elongata_contig11267:5031..5989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11267 5032..5989 -
1622929648.397949-CDS-H-elongata_contig11267:6336..68301622929648.397949-CDS-H-elongata_contig11267:6336..6830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11267 6337..6830 -
1691679104.6534712-CDS-H-elongata_contig11267:6336..68301691679104.6534712-CDS-H-elongata_contig11267:6336..6830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11267 6337..6830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11267.1035.1

>prot_H-elongata_contig11267.1035.1 ID=prot_H-elongata_contig11267.1035.1|Name=mRNA_H-elongata_contig11267.1035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=484bp
MTSLTTMEGDMRRSRERCPACARLQLEIETGQFVPGGRGDDKLYDAFRSG
GMRTRTDQDSAQHAWRPEEVICNHCLCSHESHEDTGPNGQRCCGLRREGP
WDKVCEWCRSKKGCRAWARARPCPAQGTEHACEMGAKGSYCTHCRCSCAT
HNPHRFDHRSNWVSRNLDTQRACGVCLACWSGWCVPKSGAKRKLLGATGE
PEEPFARQWRPGRDGDVYVLTGLFDKLTGKLPEGSFAHAVFGSSLRYFRS
FVSPLETLQVFHEAGVTSGERSASIGEAWSGGGSQYPPEKPAGSRKVVAA
PIRQGAGAERHFSRRHGRRDHKWQWDMSRSPWSLMLLQKGRHALGVPREE
AEEFEEAGIIAFPGHVVKHKDTVKNGGYGKTIGTLVLRSPEAAFVCLQVQ
RGLLEKAVRAAFDLGVELPPRFEQKGRFKFAIYEGDAWAMVGGTARNDAE
HAVVCGRSAIPDGEPGEGFVRVAFNMRWGWQDD*
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mRNA from alignment at H-elongata_contig11267:4217..6904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11267.1035.1 ID=mRNA_H-elongata_contig11267.1035.1|Name=mRNA_H-elongata_contig11267.1035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2688bp|location=Sequence derived from alignment at H-elongata_contig11267:4217..6904- (Himanthalia elongata Himel1 dioecious)
AAGGTACATCAGGTACATCAGCCGACGATCGAGATTTGCGGAAAACTTAG
CAGAGGAGGGGAAGGCGCAGAGAGATGACGAGCTTGACGACGATGGAGGG
TGACATGAGGCGATCGAGGGAGAGGTGTCCAGCTTGTGCGCGGCTACAGC
TGGAGATCGAGACGGGACAGTTCGTCCCCGGCGGGAGAGGTGACGACAAA
CTTTACGACGCGTTTCGTAGCGGCGGAATGCGTACGCGAACCGACCAAGA
CAGCGCGCAGCATGCATGGCGGCCGGAGGAAGTGATCTGCAACCATTGCC
TGTGTTCCCACGAGTCTCACGAGGACACTGGTCCCAACGGGCAGAGATGT
TGTGGGCTGCGGCGCGAGGGTCCGTGGGACAAGGTTTGTGAGTGGTGCAG
GAGCAAGAAGGGATGCCGGGCATGGGCCAGGGCGCGACCTTGCCCGGCGC
AGGGGACGGAGCACGCGTGCGAGATGGGAGCTAAAGGAAGCTATTGTACC
CACTGCCGGTGCTCGTGCGCCACGCACAACCCCCATCGGTTCGATCATAG
ATCCAACTGGGTTAGCAGGTAAACGGAAGGGGGGGGGCGGTCTCCGCTCG
CGCTTGATGTCAACATGTTATTGTGAAATTATTCACATATGTTTTTTGCG
TGTTCAGAGGGCAAGGTAAATACAGCGAATACGTCTCTTTTACCTACATG
TGGTGCTGTGAGCTGTGAAGCGCCTTCTCAATGAATGGGATGCATTCAAT
GTTTCATTGCGTGCGGAAGTTTATGACGCCTGTCGATGTTCCTGTCCACC
AATTTCATAAAGACAGCGACGAGTAGTCCAATAGTTCCGGTCGGTAGTTC
CGTTCAAAACACCCCAAACCCCATCCAATCCAACTGAATATCGTTTCCGT
ATTGGCGTGGAGCAGGAACTTGGACACCCAACGCGCCTGCGGCGTATGTC
TAGCGTGTTGGAGTGGCTGGTGCGTCCCCAAGTCCGGCGCGAAGCGCAAG
CTTCTTGGGGCGACCGGGGAACCCGAGGAGCCCTTCGCAAGGCAGTGGAG
GCCTGGACGAGATGGCGATGTCTACGTCCTCACGGGTCTTTTTGATAAGC
TCACAGGCAAGCTCCCAGAGGGAAGCTTCGCCCACGCGGTGTTCGGCTCC
TCTCTAAGGTACTTCCGGAGCTTCGTCTCCCCTTTGGAGACGTTGCAGGT
CTTTCACGAGGCCGGGGTGACTAGCGGCGAGCGCAGCGCGTCCATAGGGG
AGGCGTGGAGCGGCGGCGGCAGTCAGTATCCCCCGGAGAAGCCTGCTGGC
TCGCGAAAGGTCGTGGCCGCGCCGATTAGACAAGGAGCCGGGGCGGAACG
GCACTTCTCTAGGCGGCACGGACGGCGTGATCACAAGTGGCAGTGGGACA
TGAGCAGAAGCCCCTGGTCGCTGATGCTGCTGCAGAAAGGGCGACACGCG
CTCGGTGTTCCTCGGGAAGAAGCGGAAGAATTTGAAGAAGCAGGAATCAT
CGCGTTTCCCGGACACGTTGTGAAACACAAGGATACCGTCAAAAATGGCG
GTTACGGGAAGACCATCGGTACCCTGGTGCTGCGGTCTCCTGAGGCGGCC
TTCGTCTGCCTGCAGGTGCAGAGGGGATTGCTCGAGAAAGCGGTGCGAGC
GGCGTTCGACTTGGGCGTGGAGCTCCCGCCGCGATTCGAGCAGAAGGGAC
GCTTCAAGTTCGCGATCTACGAGGGCGACGCGTGGGCTATGGTCGGCGGT
ACCGCGCGGAACGATGCCGAGCACGCCGTGGTGTGTGGGAGGAGCGCGAT
CCCCGACGGAGAGCCCGGTGAAGGATTCGTTAGGGTGGCGTTCAACATGA
GGTGGGGCTGGCAGGATGACTAGAGGCTGTGATGTAGTTTCTTCAAAACG
ACTATCAGTGAGGTTCTAGACCGGACCGGCCGGAAGGGCGGTTTTAAGCA
CCAGGGTAGGCTTGCTAGCAGGGGTATATTCCAGGGGGAGGTCAGCAACA
AGGAGACATAACACTTACGTGTCTCGGAAAATCCAGGAGACGTCTTCGGA
GTGCCAGGAAGAGAGTGCACACGCTTCGTAGAACCGTTTGCGTTTTATTC
CCAGCGATTTCCTCGTCCGCGGAAGTTCGGCGCAGAGGAAGAAGATTTAG
TCATGAATCTGTCGGACTCCACGCACCATCAAGTGGATTGAGCAGTTTGA
TAAGAAAAAAATTGTCTCTTTTTAAATTGACTGTTGAGGAAGTAAATATA
AAATAATTGGTGACTGACCACGAGGGGGAGCGGACGTGCGTGTAAATTGT
TTCTCGTTGTTGTACATACTTCCCACTTGATGGGTTTCCCTTACACCGGT
GATGGGAGTTGAACAATCGTGATCGTCTTTTTTAGCCCATGAGTCGTTTT
TTTTGGTACTTTGGTAGCAACGACTGCAAAACAAAATAGGCGAGTCTAGA
GGTTTTCTATACAAAGTGATGCGTAGGGTCGAACGAGGAGTTTGGTTTTG
AAACTACTGGGCAGGGCGCATCATTTTCGGCAATACGCTGTCAGCGTCAG
TATATATTAAAAAGAGGGCTGCTCGTAGGGTCTAATTTTGCGGCCGCGTG
CGCCTTTCCCGTAGCAGGTTAGGCCAGCCTCATGATGTGATCGTGTGAAG
TGTGTTCCTGTGGGCTCCCGATCTGTGTTATTTTGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig11267:4217..6904-

>mRNA_H-elongata_contig11267.1035.1 ID=mRNA_H-elongata_contig11267.1035.1|Name=mRNA_H-elongata_contig11267.1035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2904bp|location=Sequence derived from alignment at H-elongata_contig11267:4217..6904- (Himanthalia elongata Himel1 dioecious)
ATGACGAGCTTGACGACGATGGAGGGTGACATGAGGCGATCGAGGGAGAG
GTGTCCAGCTTGTGCGCGGCTACAGCTGGAGATCGAGACGGGACAGTTCG
TCCCCGGCGGGAGAGGTGACGACAAACTTTACGACGCGTTTCGTAGCGGC
GGAATGCGTACGCGAACCGACCAAGACAGCGCGCAGCATGCATGGCGGCC
GGAGGAAGTGATCTGCAACCATTGCCTGTGTTCCCACGAGTCTCACGAGG
ACACTGGTCCCAACGGGCAGAGATGTTGTGGGCTGCGGCGCGAGGGTCCG
TGGGACAAGGTTTGTGAGTGGTGCAGGAGCAAGAAGGGATGCCGGGCATG
GGCCAGGGCGCGACCTTGCCCGGCGCAGGGGACGGAGCACGCGTGCGAGA
TGGGAGCTAAAGGAAGCTATTGTACCCACTGCCGGTGCTCGTGCGCCACG
CACAACCCCCATCGGTTCGATCATAGATCCAACTGGGTTAGCAGATGACG
AGCTTGACGACGATGGAGGGTGACATGAGGCGATCGAGGGAGAGGTGTCC
AGCTTGTGCGCGGCTACAGCTGGAGATCGAGACGGGACAGTTCGTCCCCG
GCGGGAGAGGTGACGACAAACTTTACGACGCGTTTCGTAGCGGCGGAATG
CGTACGCGAACCGACCAAGACAGCGCGCAGCATGCATGGCGGCCGGAGGA
AGTGATCTGCAACCATTGCCTGTGTTCCCACGAGTCTCACGAGGACACTG
GTCCCAACGGGCAGAGATGTTGTGGGCTGCGGCGCGAGGGTCCGTGGGAC
AAGGTTTGTGAGTGGTGCAGGAGCAAGAAGGGATGCCGGGCATGGGCCAG
GGCGCGACCTTGCCCGGCGCAGGGGACGGAGCACGCGTGCGAGATGGGAG
CTAAAGGAAGCTATTGTACCCACTGCCGGTGCTCGTGCGCCACGCACAAC
CCCCATCGGTTCGATCATAGATCCAACTGGGTTAGCAGGAACTTGGACAC
CCAACGCGCCTGCGGCGTATGTCTAGCGTGTTGGAGTGGCTGGTGCGTCC
CCAAGTCCGGCGCGAAGCGCAAGCTTCTTGGGGCGACCGGGGAACCCGAG
GAGCCCTTCGCAAGGCAGTGGAGGCCTGGACGAGATGGCGATGTCTACGT
CCTCACGGGTCTTTTTGATAAGCTCACAGGCAAGCTCCCAGAGGGAAGCT
TCGCCCACGCGGTGTTCGGCTCCTCTCTAAGGTACTTCCGGAGCTTCGTC
TCCCCTTTGGAGACGTTGCAGGTCTTTCACGAGGCCGGGGTGACTAGCGG
CGAGCGCAGCGCGTCCATAGGGGAGGCGTGGAGCGGCGGCGGCAGTCAGT
ATCCCCCGGAGAAGCCTGCTGGCTCGCGAAAGGTCGTGGCCGCGCCGATT
AGACAAGGAGCCGGGGCGGAACGGCACTTCTCTAGGCGGCACGGACGGCG
TGATCACAAGTGGCAGTGGGACATGAGCAGAAGCCCCTGGTCGCTGATGC
TGCTGCAGAAAGGGCGACACGCGCTCGGTGTTCCTCGGGAAGAAGCGGAA
GAATTTGAAGAAGCAGGAATCATCGCGTTTCCCGGACACGTTGTGAAACA
CAAGGATACCGTCAAAAATGGCGGTTACGGGAAGACCATCGGTACCCTGG
TGCTGCGGTCTCCTGAGGCGGCCTTCGTCTGCCTGCAGGTGCAGAGGGGA
TTGCTCGAGAAAGCGGTGCGAGCGGCGTTCGACTTGGGCGTGGAGCTCCC
GCCGCGATTCGAGCAGAAGGGACGCTTCAAGTTCGCGATCTACGAGGGCG
ACGCGTGGGCTATGGTCGGCGGTACCGCGCGGAACGATGCCGAGCACGCC
GTGGTGTGTGGGAGGAGCGCGATCCCCGACGGAGAGCCCGGTGAAGGATT
CGTTAGGGTGGCGTTCAACATGAGGTGGGGCTGGCAGGATGACTAGGAAC
TTGGACACCCAACGCGCCTGCGGCGTATGTCTAGCGTGTTGGAGTGGCTG
GTGCGTCCCCAAGTCCGGCGCGAAGCGCAAGCTTCTTGGGGCGACCGGGG
AACCCGAGGAGCCCTTCGCAAGGCAGTGGAGGCCTGGACGAGATGGCGAT
GTCTACGTCCTCACGGGTCTTTTTGATAAGCTCACAGGCAAGCTCCCAGA
GGGAAGCTTCGCCCACGCGGTGTTCGGCTCCTCTCTAAGGTACTTCCGGA
GCTTCGTCTCCCCTTTGGAGACGTTGCAGGTCTTTCACGAGGCCGGGGTG
ACTAGCGGCGAGCGCAGCGCGTCCATAGGGGAGGCGTGGAGCGGCGGCGG
CAGTCAGTATCCCCCGGAGAAGCCTGCTGGCTCGCGAAAGGTCGTGGCCG
CGCCGATTAGACAAGGAGCCGGGGCGGAACGGCACTTCTCTAGGCGGCAC
GGACGGCGTGATCACAAGTGGCAGTGGGACATGAGCAGAAGCCCCTGGTC
GCTGATGCTGCTGCAGAAAGGGCGACACGCGCTCGGTGTTCCTCGGGAAG
AAGCGGAAGAATTTGAAGAAGCAGGAATCATCGCGTTTCCCGGACACGTT
GTGAAACACAAGGATACCGTCAAAAATGGCGGTTACGGGAAGACCATCGG
TACCCTGGTGCTGCGGTCTCCTGAGGCGGCCTTCGTCTGCCTGCAGGTGC
AGAGGGGATTGCTCGAGAAAGCGGTGCGAGCGGCGTTCGACTTGGGCGTG
GAGCTCCCGCCGCGATTCGAGCAGAAGGGACGCTTCAAGTTCGCGATCTA
CGAGGGCGACGCGTGGGCTATGGTCGGCGGTACCGCGCGGAACGATGCCG
AGCACGCCGTGGTGTGTGGGAGGAGCGCGATCCCCGACGGAGAGCCCGGT
GAAGGATTCGTTAGGGTGGCGTTCAACATGAGGTGGGGCTGGCAGGATGA
CTAG
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