mRNA_H-elongata_contig112650.1033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112650.1033.1
Unique NamemRNA_H-elongata_contig112650.1033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.110e-45
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1
Query:    1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            ASP+LLNSSAVAKMHMGE+QEAE+ LVEA+SK QND DTLVNLIC CRH+DKPASF+DRY+NQLK  HPQHPYV+SL NAE+AFDRVA  FA+
Sbjct:  202 ASPLLLNSSAVAKMHMGEYQEAETILVEAISKSQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFAL 294          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A7S2XUN8_9STRA (Coatomer subunit epsilon n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.970e-32
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            AS  LLN+ A AKMH G+ QEAE +LV+A SK QNDPDTLVN+ICC +H+ KP  FI+RYVNQLK   P+HPYVK++   E AFDRVA  +A+
Sbjct:  199 ASTALLNALACAKMHAGQAQEAEQHLVQAASKNQNDPDTLVNMICCYQHLQKPEDFINRYVNQLKSVAPEHPYVKAMTTVEGAFDRVASTYAL 291          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A836CM75_9STRA (Coatomer subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM75_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.860e-26
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQND-PDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            ASP+LLN  AVAKMHMGE+ EAE+NL+EA  K      DTLVNL+ CCRH+DKP S   +Y+ QLK+ +P H Y  +L NAE+AF RV+ + AV
Sbjct:  204 ASPLLLNGVAVAKMHMGEWGEAEANLLEAAGKPGGGGADTLVNLVTCCRHLDKPESQAQQYLEQLKEKYPNHAYTVTLRNAESAFSRVSDSLAV 297          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A7S2RZ95_9STRA (Coatomer subunit epsilon n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ95_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.330e-25
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   13 LLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
            LLN  AVA + MG+F EAE  L++A+SK QNDPDTL+NLICC +HM K +  ++R+++QLK   P HP+V  L   E AFDRV+  FA
Sbjct:  220 LLNGVAVAHIQMGKFDEAEKYLMDAISKGQNDPDTLINLICCYQHMGKSSDLVNRHISQLKTVAPNHPFVAQLATVEAAFDRVSAGFA 307          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: UPI00077AB92E (coatomer subunit epsilon-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AB92E)

HSP 1 Score: 93.6 bits (231), Expect = 3.290e-21
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            MLLN  AVA MHMG+F++AES L +AL K  ++P+TL+N+I   +H+ K      RY++QLK  HP HP  K     E AFD++AG +AV
Sbjct:  173 MLLNGQAVAYMHMGKFEDAESLLQDALDKDSSNPETLINMIVLSQHLGKAPEVTTRYISQLKDGHPNHPLTKEFQAKEKAFDQLAGQYAV 262          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A444ZE34_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444ZE34_ARAHY)

HSP 1 Score: 90.5 bits (223), Expect = 6.830e-21
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
            ++ +LLN  AV  MHMG F EAE+ LVEAL+K   DP+TL NL+ CC H+ KP+S   +  +QLK +HP H  VK +  AE +FDR   +F+
Sbjct:   82 STSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSS---KSFSQLKLSHPDHVLVKRVTTAEESFDRALQSFS 170          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A3M6V574_POCDA (Coatomer subunit epsilon n=4 Tax=Scleractinia TaxID=6125 RepID=A0A3M6V574_POCDA)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-20
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            MLLN  A+A MHMG+F++AES L +AL K  ++P+TL+N++   +H+ K      RY++QLK  HP HP+ K LL  E  FD++A  +AV
Sbjct:  206 MLLNGQAIAYMHMGKFEDAESCLQDALDKDSSNPETLINMVVLSQHLGKAPEVTTRYISQLKDGHPSHPFTKDLLAKEKNFDQLAEQYAV 295          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: UPI001036EEAC (coatomer subunit epsilon-1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036EEAC)

HSP 1 Score: 87.0 bits (214), Expect = 3.400e-20
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
            ++LN  AV  MHMG F +AES L+EAL+K   DP+TL NL+ C  H+ KP+S   R++NQ+K +HP H  VK   +AE +FDR     A
Sbjct:   26 LILNRKAVCCMHMGNFDQAESLLLEALNKDAKDPETLANLVVCSPHLGKPSS---RFLNQMKLSHPDHMLVKRASSAEESFDRAVQTIA 111          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A251TC83_HELAN (Coatomer subunit epsilon n=4 Tax=Asteraceae TaxID=4210 RepID=A0A251TC83_HELAN)

HSP 1 Score: 91.3 bits (225), Expect = 3.630e-20
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDR 258
            ++LN  AV  MHMG F EAES L+EAL+K   DP+TL NL+ CC H+ KP+S   R+++QLK  HP+H  VK  L AE +FDR
Sbjct:  205 LVLNGKAVCCMHMGNFDEAESFLLEALNKDAKDPETLANLVVCCLHLGKPSS---RFLSQLKLTHPEHMLVKRGLTAEESFDR 284          
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A507C522_9FUNG (Coatomer subunit epsilon n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C522_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 8.690e-20
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   13 LLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
            LLN  AV +MH G+F +AE+ L++AL++  NDP+ L NL+ C   + KP+  + RY+NQL+   P HP+V    + E  FDR AG FA+
Sbjct:  215 LLNGQAVCRMHAGKFADAETLLLDALNRNNNDPEVLANLMVCSVALGKPSDVVSRYLNQLRDASPNHPFVLEYASKEAMFDRAAGRFAI 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXM7_ECTSI2.110e-4579.57Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2XUN8_9STRA2.970e-3262.37Coatomer subunit epsilon n=1 Tax=Fibrocapsa japoni... [more]
A0A836CM75_9STRA2.860e-2657.45Coatomer subunit epsilon n=1 Tax=Tribonema minus T... [more]
A0A7S2RZ95_9STRA7.330e-2554.55Coatomer subunit epsilon n=1 Tax=Rhizochromulina m... [more]
UPI00077AB92E3.290e-2148.89coatomer subunit epsilon-like n=1 Tax=Acropora dig... [more]
A0A444ZE34_ARAHY6.830e-2148.91Uncharacterized protein n=2 Tax=Arachis hypogaea T... [more]
A0A3M6V574_POCDA1.100e-2046.67Coatomer subunit epsilon n=4 Tax=Scleractinia TaxI... [more]
UPI001036EEAC3.400e-2048.31coatomer subunit epsilon-1-like n=1 Tax=Camellia s... [more]
A0A251TC83_HELAN3.630e-2054.22Coatomer subunit epsilon n=4 Tax=Asteraceae TaxID=... [more]
A0A507C522_9FUNG8.690e-2044.94Coatomer subunit epsilon n=1 Tax=Synchytrium micro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112650contigH-elongata_contig112650:701..1934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.1e-34
Seed eggNOG ortholog2880.D7FXM7
Preferred nameCOPE1
KEGG koko:K17268
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006900,GO:0006901,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1990841
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG3081@1,KOG3081@2759
Ec32 ortholog descriptionVesicle coat complex COPI, epsilon subunit
Ec32 orthologEc-28_002330.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112650.1033.1prot_H-elongata_contig112650.1033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112650 701..1925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.1630812-CDS-H-elongata_contig112650:700..9041622929648.1630812-CDS-H-elongata_contig112650:700..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112650 701..904 -
1691679104.567461-CDS-H-elongata_contig112650:700..9041691679104.567461-CDS-H-elongata_contig112650:700..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112650 701..904 -
1622929648.1923249-CDS-H-elongata_contig112650:1850..19251622929648.1923249-CDS-H-elongata_contig112650:1850..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112650 1851..1925 -
1691679104.578756-CDS-H-elongata_contig112650:1850..19251691679104.578756-CDS-H-elongata_contig112650:1850..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112650 1851..1925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.2110708-UTR-H-elongata_contig112650:1925..19341622929648.2110708-UTR-H-elongata_contig112650:1925..1934Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112650 1926..1934 -
1691679104.5953004-UTR-H-elongata_contig112650:1925..19341691679104.5953004-UTR-H-elongata_contig112650:1925..1934Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112650 1926..1934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112650.1033.1

>prot_H-elongata_contig112650.1033.1 ID=prot_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKP
ASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAVVA*
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mRNA from alignment at H-elongata_contig112650:701..1934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112650.1033.1 ID=mRNA_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig112650:701..1934- (Himanthalia elongata Himel1 dioecious)
GCGTCTCCTATGCTTCTCAACAGCAGCGCCGTAGCCAAGATGCACATGGG GGAGTTCCAGGAAGCTGAGAGCAATCTTGTCGAGGTGAGTGCAGACACAA AAGAAAGAAAACCGAGCCAACGCCTCTTTGTGCATGGCATGGTCATAAAT AGGAATAAGTACTTTTTCCTCTCTTTCTCTTTTATTTGTTTTTCGGATGT AGCGAGATGGTATGGAAAGGGAAGCCTGCGTCTGTGACCACGGGCTCGAG ATATCGGACTTTATGTGCGGAAATAATAATAATAATAATAATAATGCGGG GGGTGGGCTGTATCACGTTTCGTGTCTTGAGCGTGACGGAAAAAAAGTGA TTTGACGGGAACGTCAATTGCGTGACGGCCCGGGCCAAAAATCAACCTCT GTGATGGGTTGTATAATAAAACGTACCCTAGGTATTTGCTTCAACCCTGG TGATACTGGGGGCCAGGTCGGGTGGGAGAGAGAGGGATCGATTATCGTGA GCAGTTGGGCATCATTTATGTGTGTATACATCTTTTAAAGGTATATTTAT GTATATGCGGATACATACTTCGTATATAAGGTACCTGTACCGGTCACCCC GGTGGATCAGTTGGTAACCTCGAAACCTTCTGATATTGGGACGTGAGTTC GAATCTCGGCGCAGTTACACGAACTGAGATTTTTTTCTCATTATCATGCT GAACAAGTAGAGAATGAATATTTCGTGGGTACAGTACACAAAATTCTATA TAATTCACGATCGACGAGGGAAAGAAACAGCTGAATCCTTCTCGCGCTAA AAAAAATAAGGCAATCACCGCAGAAGGAAGGTGGAGAAATATTGTGTGAC CCCGGCTGGTGCTTCCACATGTCTGGCGTCCAGAGAATGACATTGTATGT GTTAAGATATATTTTACAAGGATTAGGTATAATATGCATGTATATGTATA TATATATATATATATATATACGATGTATATACTTCGAATATCAGGTACCT TTTTGTCTTTTTGTAACTAATACACGGCAGGCCTTGAGCAAGCGACAGAA CGACCCGGACACCCTGGTGAACCTCATCTGCTGCTGCCGACACATGGACA AGCCCGCCTCCTTCATCGACCGCTACGTGAACCAGCTGAAGAAGAACCAT CCGCAGCACCCTTACGTAAAGTCCCTCTTGAACGCCGAGACTGCGTTTGA CCGAGTCGCCGGGAACTTCGCCGTCGTCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112650:701..1934-

>mRNA_H-elongata_contig112650.1033.1 ID=mRNA_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig112650:701..1934- (Himanthalia elongata Himel1 dioecious)
ATGCTTCTCAACAGCAGCGCCGTAGCCAAGATGCACATGGGGGAGTTCCA
GGAAGCTGAGAGCAATCTTGTCGAGATGCTTCTCAACAGCAGCGCCGTAG
CCAAGATGCACATGGGGGAGTTCCAGGAAGCTGAGAGCAATCTTGTCGAG
GCCTTGAGCAAGCGACAGAACGACCCGGACACCCTGGTGAACCTCATCTG
CTGCTGCCGACACATGGACAAGCCCGCCTCCTTCATCGACCGCTACGTGA
ACCAGCTGAAGAAGAACCATCCGCAGCACCCTTACGTAAAGTCCCTCTTG
AACGCCGAGACTGCGTTTGACCGAGTCGCCGGGAACTTCGCCGTCGTCGC
TTGAGCCTTGAGCAAGCGACAGAACGACCCGGACACCCTGGTGAACCTCA
TCTGCTGCTGCCGACACATGGACAAGCCCGCCTCCTTCATCGACCGCTAC
GTGAACCAGCTGAAGAAGAACCATCCGCAGCACCCTTACGTAAAGTCCCT
CTTGAACGCCGAGACTGCGTTTGACCGAGTCGCCGGGAACTTCGCCGTCG
TCGCTTGA
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