mRNA_H-elongata_contig112650.1033.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI) HSP 1 Score: 156 bits (395), Expect = 2.110e-45 Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
ASP+LLNSSAVAKMHMGE+QEAE+ LVEA+SK QND DTLVNLIC CRH+DKPASF+DRY+NQLK HPQHPYV+SL NAE+AFDRVA FA+
Sbjct: 202 ASPLLLNSSAVAKMHMGEYQEAETILVEAISKSQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFAL 294
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A7S2XUN8_9STRA (Coatomer subunit epsilon n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN8_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.970e-32 Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
AS LLN+ A AKMH G+ QEAE +LV+A SK QNDPDTLVN+ICC +H+ KP FI+RYVNQLK P+HPYVK++ E AFDRVA +A+
Sbjct: 199 ASTALLNALACAKMHAGQAQEAEQHLVQAASKNQNDPDTLVNMICCYQHLQKPEDFINRYVNQLKSVAPEHPYVKAMTTVEGAFDRVASTYAL 291
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A836CM75_9STRA (Coatomer subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM75_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.860e-26 Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQND-PDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
ASP+LLN AVAKMHMGE+ EAE+NL+EA K DTLVNL+ CCRH+DKP S +Y+ QLK+ +P H Y +L NAE+AF RV+ + AV
Sbjct: 204 ASPLLLNGVAVAKMHMGEWGEAEANLLEAAGKPGGGGADTLVNLVTCCRHLDKPESQAQQYLEQLKEKYPNHAYTVTLRNAESAFSRVSDSLAV 297
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A7S2RZ95_9STRA (Coatomer subunit epsilon n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ95_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.330e-25 Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 13 LLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
LLN AVA + MG+F EAE L++A+SK QNDPDTL+NLICC +HM K + ++R+++QLK P HP+V L E AFDRV+ FA
Sbjct: 220 LLNGVAVAHIQMGKFDEAEKYLMDAISKGQNDPDTLINLICCYQHMGKSSDLVNRHISQLKTVAPNHPFVAQLATVEAAFDRVSAGFA 307
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: UPI00077AB92E (coatomer subunit epsilon-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AB92E) HSP 1 Score: 93.6 bits (231), Expect = 3.290e-21 Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
MLLN AVA MHMG+F++AES L +AL K ++P+TL+N+I +H+ K RY++QLK HP HP K E AFD++AG +AV
Sbjct: 173 MLLNGQAVAYMHMGKFEDAESLLQDALDKDSSNPETLINMIVLSQHLGKAPEVTTRYISQLKDGHPNHPLTKEFQAKEKAFDQLAGQYAV 262
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A444ZE34_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444ZE34_ARAHY) HSP 1 Score: 90.5 bits (223), Expect = 6.830e-21 Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 1 ASPMLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
++ +LLN AV MHMG F EAE+ LVEAL+K DP+TL NL+ CC H+ KP+S + +QLK +HP H VK + AE +FDR +F+
Sbjct: 82 STSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSS---KSFSQLKLSHPDHVLVKRVTTAEESFDRALQSFS 170
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A3M6V574_POCDA (Coatomer subunit epsilon n=4 Tax=Scleractinia TaxID=6125 RepID=A0A3M6V574_POCDA) HSP 1 Score: 92.8 bits (229), Expect = 1.100e-20 Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
MLLN A+A MHMG+F++AES L +AL K ++P+TL+N++ +H+ K RY++QLK HP HP+ K LL E FD++A +AV
Sbjct: 206 MLLNGQAIAYMHMGKFEDAESCLQDALDKDSSNPETLINMVVLSQHLGKAPEVTTRYISQLKDGHPSHPFTKDLLAKEKNFDQLAEQYAV 295
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: UPI001036EEAC (coatomer subunit epsilon-1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036EEAC) HSP 1 Score: 87.0 bits (214), Expect = 3.400e-20 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFA 276
++LN AV MHMG F +AES L+EAL+K DP+TL NL+ C H+ KP+S R++NQ+K +HP H VK +AE +FDR A
Sbjct: 26 LILNRKAVCCMHMGNFDQAESLLLEALNKDAKDPETLANLVVCSPHLGKPSS---RFLNQMKLSHPDHMLVKRASSAEESFDRAVQTIA 111
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A251TC83_HELAN (Coatomer subunit epsilon n=4 Tax=Asteraceae TaxID=4210 RepID=A0A251TC83_HELAN) HSP 1 Score: 91.3 bits (225), Expect = 3.630e-20 Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 10 MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDR 258
++LN AV MHMG F EAES L+EAL+K DP+TL NL+ CC H+ KP+S R+++QLK HP+H VK L AE +FDR
Sbjct: 205 LVLNGKAVCCMHMGNFDEAESFLLEALNKDAKDPETLANLVVCCLHLGKPSS---RFLSQLKLTHPEHMLVKRGLTAEESFDR 284
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Match: A0A507C522_9FUNG (Coatomer subunit epsilon n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C522_9FUNG) HSP 1 Score: 90.5 bits (223), Expect = 8.690e-20 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 13 LLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPASFIDRYVNQLKKNHPQHPYVKSLLNAETAFDRVAGNFAV 279
LLN AV +MH G+F +AE+ L++AL++ NDP+ L NL+ C + KP+ + RY+NQL+ P HP+V + E FDR AG FA+
Sbjct: 215 LLNGQAVCRMHAGKFADAETLLLDALNRNNNDPEVLANLMVCSVALGKPSDVVSRYLNQLRDASPNHPFVLEYASKEAMFDRAAGRFAI 303 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112650.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112650.1033.1 >prot_H-elongata_contig112650.1033.1 ID=prot_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp MLLNSSAVAKMHMGEFQEAESNLVEALSKRQNDPDTLVNLICCCRHMDKPback to top mRNA from alignment at H-elongata_contig112650:701..1934- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112650.1033.1 ID=mRNA_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig112650:701..1934- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112650:701..1934- >mRNA_H-elongata_contig112650.1033.1 ID=mRNA_H-elongata_contig112650.1033.1|Name=mRNA_H-elongata_contig112650.1033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig112650:701..1934- (Himanthalia elongata Himel1 dioecious)back to top |