mRNA_H-elongata_contig112636.1032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112636.1032.1
Unique NamemRNA_H-elongata_contig112636.1032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A1B6CN42_9HEMI (DUF667 domain-containing protein n=2 Tax=Neoptera TaxID=33340 RepID=A0A1B6CN42_9HEMI)

HSP 1 Score: 208 bits (530), Expect = 8.350e-67
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPA+A KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADAKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD 127
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BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: F0YCD1_AURAN (DUF667 domain-containing protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=F0YCD1_AURAN)

HSP 1 Score: 208 bits (530), Expect = 1.150e-66
Identity = 102/109 (93.58%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITDQDIQSSVLEI+GTNVST +ITCPA+A +TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIMGTNVSTNYITCPADAKRTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A482XD26_LAOST (DUF667 domain-containing protein n=15 Tax=Bilateria TaxID=33213 RepID=A0A482XD26_LAOST)

HSP 1 Score: 206 bits (525), Expect = 4.810e-66
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPA+  KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A2W1BGC9_HELAM (DUF667 domain-containing protein n=3 Tax=Ditrysia TaxID=37567 RepID=A0A2W1BGC9_HELAM)

HSP 1 Score: 206 bits (525), Expect = 4.810e-66
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTT+ITCPA+  KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE
Sbjct:   15 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 123
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A1I8Q6M5_STOCA (DUF667 domain-containing protein n=3 Tax=Bilateria TaxID=33213 RepID=A0A1I8Q6M5_STOCA)

HSP 1 Score: 206 bits (525), Expect = 6.230e-66
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPA+  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNVKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A6S7GUQ9_PARCT (DUF667 domain-containing protein n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7GUQ9_PARCT)

HSP 1 Score: 206 bits (524), Expect = 7.060e-66
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIW+KKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPAEA+KTL IKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+
Sbjct:   19 SKPLQIWEKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPAEANKTLAIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD 127
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BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: A0A1A9V1F6_GLOAU (DUF667 domain-containing protein n=1 Tax=Glossina austeni TaxID=7395 RepID=A0A1A9V1F6_GLOAU)

HSP 1 Score: 207 bits (526), Expect = 7.800e-66
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPA+  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: CFA20_DROME (Cilia- and flagella-associated protein 20 n=39 Tax=Endopterygota TaxID=33392 RepID=CFA20_DROME)

HSP 1 Score: 206 bits (524), Expect = 8.290e-66
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQ+WDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPA+  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE
Sbjct:   19 SKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: UPI00077A6E75 (cilia- and flagella-associated protein 20 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6E75)

HSP 1 Score: 206 bits (523), Expect = 9.700e-66
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITD DIQS VLE+VGTNVSTT+ITCPA++ KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDNDIQSLVLEVVGTNVSTTYITCPADSKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD 127
[Close]
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Match: UPI000C773941 (cilia- and flagella-associated protein 20-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C773941)

HSP 1 Score: 205 bits (522), Expect = 9.970e-66
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 327
            SKPLQIWDKKVRNGHIKRITDQDIQS VLEIVGTNVSTT+ITCPA+  KTLGIKLP+LVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+
Sbjct:   19 SKPLQIWDKKVRNGHIKRITDQDIQSFVLEIVGTNVSTTYITCPADPKKTLGIKLPYLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112636.1032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6CN42_9HEMI8.350e-6794.50DUF667 domain-containing protein n=2 Tax=Neoptera ... [more]
F0YCD1_AURAN1.150e-6693.58DUF667 domain-containing protein n=3 Tax=Ochrophyt... [more]
A0A482XD26_LAOST4.810e-6693.58DUF667 domain-containing protein n=15 Tax=Bilateri... [more]
A0A2W1BGC9_HELAM4.810e-6693.58DUF667 domain-containing protein n=3 Tax=Ditrysia ... [more]
A0A1I8Q6M5_STOCA6.230e-6693.58DUF667 domain-containing protein n=3 Tax=Bilateria... [more]
A0A6S7GUQ9_PARCT7.060e-6693.58DUF667 domain-containing protein n=2 Tax=Alcyonace... [more]
A0A1A9V1F6_GLOAU7.800e-6693.58DUF667 domain-containing protein n=1 Tax=Glossina ... [more]
CFA20_DROME8.290e-6692.66Cilia- and flagella-associated protein 20 n=39 Tax... [more]
UPI00077A6E759.700e-6691.74cilia- and flagella-associated protein 20 n=1 Tax=... [more]
UPI000C7739419.970e-6691.74cilia- and flagella-associated protein 20-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112636contigH-elongata_contig112636:304..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog2880.D7G852
Preferred nameDUF667
GOsGO:0000003,GO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001578,GO:0003006,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009987,GO:0010467,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0018094,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031514,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0035082,GO:0036064,GO:0036126,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0046483,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048520,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051674,GO:0051704,GO:0060259,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072594,GO:0090304,GO:0097014,GO:0097223,GO:0097540,GO:0097545,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901317,GO:1901360,GO:1901564,GO:1902019,GO:1902093,GO:1990716,GO:2000145,GO:2000147,GO:2000155,GO:2000253
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
Ec32 ortholog descriptionFlagellar Associated Protein
Ec32 orthologEc-12_001470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.1198711-CDS-H-elongata_contig112636:303..6511622929648.1198711-CDS-H-elongata_contig112636:303..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112636 304..651 -
1691679104.556695-CDS-H-elongata_contig112636:303..6511691679104.556695-CDS-H-elongata_contig112636:303..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112636 304..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112636.1032.1prot_H-elongata_contig112636.1032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112636 304..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112636.1032.1

>prot_H-elongata_contig112636.1032.1 ID=prot_H-elongata_contig112636.1032.1|Name=mRNA_H-elongata_contig112636.1032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
SKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPAEASKT
LGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFI
CTMPMRLDEVSHSDI*
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mRNA from alignment at H-elongata_contig112636:304..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112636.1032.1 ID=mRNA_H-elongata_contig112636.1032.1|Name=mRNA_H-elongata_contig112636.1032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig112636:304..651- (Himanthalia elongata Himel1 dioecious)
TCAAAGCCTTTGCAGATCTGGGACAAGAAGGTCCGCAACGGACACATCAA
GCGCATCACCGACCAGGACATCCAGTCCTCCGTCCTGGAGATTGTCGGGA
CCAACGTCTCCACGACCTTCATCACCTGCCCCGCGGAAGCTAGCAAGACC
CTCGGGATCAAACTCCCGTTTCTCGTGATGATCCTCAAGAACCTCAAGAA
GTACTTCACGTTCGAGGTGCAGGTGCTCGACGACAAGAACGTCCGCAGGA
GATTCCGCGCCTCCAACTACCAGAGCACGACTCGCGTCAAGCCCTTCATC
TGCACGATGCCCATGCGGCTAGATGAGGTCAGTCATTCAGATATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig112636:304..651-

>mRNA_H-elongata_contig112636.1032.1 ID=mRNA_H-elongata_contig112636.1032.1|Name=mRNA_H-elongata_contig112636.1032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig112636:304..651- (Himanthalia elongata Himel1 dioecious)
TCAAAGCCTTTGCAGATCTGGGACAAGAAGGTCCGCAACGGACACATCAA
GCGCATCACCGACCAGGACATCCAGTCCTCCGTCCTGGAGATTGTCGGGA
CCAACGTCTCCACGACCTTCATCACCTGCCCCGCGGAAGCTAGCAAGACC
CTCGGGATCAAACTCCCGTTTCTCGTGATGATCCTCAAGAACCTCAAGAA
GTACTTCACGTTCGAGGTGCAGGTGCTCGACGACAAGAACGTCCGCAGGA
GATTCCGCGCCTCCAACTACCAGAGCACGACTCGCGTCAAGCCCTTCATC
TGCACGATGCCCATGCGGCTAGATGAGGTCAGTCATTCAGATATATAGTC
AAAGCCTTTGCAGATCTGGGACAAGAAGGTCCGCAACGGACACATCAAGC
GCATCACCGACCAGGACATCCAGTCCTCCGTCCTGGAGATTGTCGGGACC
AACGTCTCCACGACCTTCATCACCTGCCCCGCGGAAGCTAGCAAGACCCT
CGGGATCAAACTCCCGTTTCTCGTGATGATCCTCAAGAACCTCAAGAAGT
ACTTCACGTTCGAGGTGCAGGTGCTCGACGACAAGAACGTCCGCAGGAGA
TTCCGCGCCTCCAACTACCAGAGCACGACTCGCGTCAAGCCCTTCATCTG
CACGATGCCCATGCGGCTAGATGAGGTCAGTCATTCAGATATATAG
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