mRNA_H-elongata_contig112625.1030.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112625.1030.1
Unique NamemRNA_H-elongata_contig112625.1030.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2I0W4K7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W4K7_9ASPA)

HSP 1 Score: 65.1 bits (157), Expect = 1.480e-9
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 1
Query:   49 CQICSRTGHTAQGCKDSGSALIANNAITRPK----ERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
            CQIC + GH A  C    +   A      P+    +    + W++DSG T H+T D A +    P    D V    G+ L +  YG       QG     ++ R+L L  + HVPNL  HNLLS  +LT
Sbjct:  288 CQICGKIGHIALNCWHRNNYKYAPTIQNVPRALLTQPMPQQSWILDSGATNHITNDSASIHQSAPYNGSDSVTVLNGSSLSIHNYG-------QGLLPLPETPRKLHLFRLLHVPNLT-HNLLSVSKLT 408          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 8.030e-7
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  163 WVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPN-LGQHNLLSTKRLT 423
            +++D+G + H+  DP+ L DY  A     +E A G L+PVAGYG+LR+         T +  ++ LK VAH P+ +G  NL+  KRLT
Sbjct:  751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVT--------TQAGLKIELKDVAHCPSAIG--NLIGGKRLT 828          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  157 EFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
            + W+IDSG T+HMT +P+ +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  HNLLS K++T
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 95          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  106 ALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
            +L+++N+    K+      W+IDSG T+HMT +P+ +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  HNLLS K++T
Sbjct:  224 SLLSSNSAFNWKD-----MWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 310          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2N9EP24_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EP24_FAGSY)

HSP 1 Score: 53.5 bits (127), Expect = 1.680e-5
Identity = 39/130 (30.00%), Postives = 56/130 (43.08%), Query Frame = 1
Query:   49 CQICSRTGHTAQGC----------KDSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLS 408
            CQIC + GHTA  C          +   S L A  + T       S +W+ D+G T+H T D A ++  T     D +    G +LP+   GH +L           S     L++   VPN+ + NLLS
Sbjct:  317 CQICYKMGHTAIDCYHRMDFTYQGRHPPSKLAAMASSTH---NLSSNYWISDTGATDHFTPDLANIQHPTEYTGTDTITVGNGNILPITHIGHAQLRA---------SKYLFALRHTLRVPNM-KSNLLS 433          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MJW7_MALBA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MJW7_MALBA)

HSP 1 Score: 52.4 bits (124), Expect = 4.260e-5
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query:   94 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
            D+G+   A N    P  +     W+IDSG ++HMT +      +T  P+ + V+ A G   PV G G + L  G            L+L  V HVPNL  HNLLS  +LT
Sbjct:  326 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 417          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NTL9_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NTL9_MALBA)

HSP 1 Score: 52.4 bits (124), Expect = 4.350e-5
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query:   94 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
            D+G+   A N    P  +     W+IDSG ++HMT +      +T  P+ + V+ A G   PV G G + L  G            L+L  V HVPNL  HNLLS  +LT
Sbjct:  324 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 415          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MDT6_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MDT6_MALBA)

HSP 1 Score: 52.0 bits (123), Expect = 5.210e-5
Identity = 39/106 (36.79%), Postives = 48/106 (45.28%), Query Frame = 1
Query:  106 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
            A +A  A + P      SE+W++DSG T HMT D + L    P    D V  A G  L +A  G   L +          T  L L  V HVP L QH LLS  +L
Sbjct:  356 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAAPYSSSDTVTGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 451          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NFL3_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NFL3_MALBA)

HSP 1 Score: 51.6 bits (122), Expect = 7.770e-5
Identity = 38/106 (35.85%), Postives = 48/106 (45.28%), Query Frame = 1
Query:  106 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
            A +A  A + P      SE+W++DSG T HMT D + L    P    D +  A G  L +A  G   L +          T  L L  V HVP L QH LLS  +L
Sbjct:    8 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAVPYSSSDTITGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 103          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A1J6J5K6_NICAT (Protein eceriferum 3 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6J5K6_NICAT)

HSP 1 Score: 51.6 bits (122), Expect = 7.950e-5
Identity = 40/140 (28.57%), Postives = 64/140 (45.71%), Query Frame = 1
Query:   37 PPRRCQICSRTGHTAQGCKDSGSALIANNAITRPKER-----------RGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDR-VESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
            P  +C+IC++ GH A  CK       A+  +   +E            + S+FW+IDSG T HMT D    +++T   +G++ V    G  +   G G + +    G    +D         V +VP++ Q NLLS  +L
Sbjct:  750 PDAKCKICNQLGHEAVICKGKYQKHEADAQVANEEEEDHLFVATILSTKKSDFWLIDSGCTNHMTYDRNLFKEFTS--IGNKKVRIGNGDYILAKGKGTVAIPTNSGTKKISD---------VLYVPDIDQ-NLLSVGQL 877          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2I0W4K7_9ASPA1.480e-933.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TP70_9BASI8.030e-739.77Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2P6P2V5_ROSCH2.590e-637.08Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2P6S473_ROSCH1.260e-533.96Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9EP24_FAGSY1.680e-530.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540MJW7_MALBA4.260e-535.45Integrase catalytic domain-containing protein (Fra... [more]
A0A540NTL9_MALBA4.350e-535.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A540MDT6_MALBA5.210e-536.79Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A540NFL3_MALBA7.770e-535.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J6J5K6_NICAT7.950e-528.57Protein eceriferum 3 n=1 Tax=Nicotiana attenuata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112625contigH-elongata_contig112625:168..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score61.6
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog5270.UM01393P0
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.9719682-CDS-H-elongata_contig112625:167..2621622929647.9719682-CDS-H-elongata_contig112625:167..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112625 168..262 +
1691679104.5219495-CDS-H-elongata_contig112625:167..2621691679104.5219495-CDS-H-elongata_contig112625:167..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112625 168..262 +
1622929648.001067-CDS-H-elongata_contig112625:559..8871622929648.001067-CDS-H-elongata_contig112625:559..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112625 560..887 +
1691679104.5315924-CDS-H-elongata_contig112625:559..8871691679104.5315924-CDS-H-elongata_contig112625:559..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112625 560..887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112625.1030.1prot_H-elongata_contig112625.1030.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112625 168..887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112625.1030.1

>prot_H-elongata_contig112625.1030.1 ID=prot_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MFAGRGNGHGSNPPRRCQICSRTGHTAQGCKDSGSALIANNAITRPKERR
GSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHL
RLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT
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mRNA from alignment at H-elongata_contig112625:168..887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112625.1030.1 ID=mRNA_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig112625:168..887+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGGGACGCGGCAATGGCCATGGATCGAACCCCCCCCGTCGCTG CCAAATTTGCTCGCGTACAGGTCATACTGCTCAGGGGTGCAAGGAGTTCC GTGATCTAAAAAAGGGGCAGAAGACCAGCGACGGCAACGGCGGAAATAAC GGAGACCGCGGCGGGGGCAATAGTAAATTTAAGCACCGCAACGCAAAGAG CAGGAACCACGTCACCGGCGGGAACAAGAACGTACGCCCCATGTGCTATT TCTGTGAGGGGGCGCACAAGTCCGACGATTGCCCGAACCGTGCGGACTCT ACCTTCACAGCAGCCGGCGTTGGCCCCAAACACGGCGGGTTTGCTGGGAA TTGGCACGGCAGCCTCGGGGCTGGGTTGTTCGCCAGCGTCAGCTCTGGAT CAGCACTGATCGCGAACAACGCCATCACGCGGCCGAAGGAACGGCGTGGG AGCGAATTCTGGGTAATTGATAGCGGTGAGACAGAGCACATGACACAAGA CCCGGCGGGTCTAGAGGATTACACGCCGGCACCTGTCGGAGATCGAGTGG AGAGCGCCGGCGGTACCCTACTTCCTGTGGCGGGATATGGACATCTCCGC CTCCTGGTGGGCCAAGGCAACGGCAACTTCACCGACTCGACGCGCCAGCT CACGCTAAAGTACGTCGCACATGTGCCGAATCTTGGACAGCATAATCTGC TCTCTACGAAACGGCTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig112625:168..887+

>mRNA_H-elongata_contig112625.1030.1 ID=mRNA_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig112625:168..887+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGGGACGCGGCAATGGCCATGGATCGAACCCCCCCCGTCGCTG
CCAAATTTGCTCGCGTACAGGTCATACTGCTCAGGGGTGCAAGGAATGTT
CGCGGGACGCGGCAATGGCCATGGATCGAACCCCCCCCGTCGCTGCCAAA
TTTGCTCGCGTACAGGTCATACTGCTCAGGGGTGCAAGGACTCTGGATCA
GCACTGATCGCGAACAACGCCATCACGCGGCCGAAGGAACGGCGTGGGAG
CGAATTCTGGGTAATTGATAGCGGTGAGACAGAGCACATGACACAAGACC
CGGCGGGTCTAGAGGATTACACGCCGGCACCTGTCGGAGATCGAGTGGAG
AGCGCCGGCGGTACCCTACTTCCTGTGGCGGGATATGGACATCTCCGCCT
CCTGGTGGGCCAAGGCAACGGCAACTTCACCGACTCGACGCGCCAGCTCA
CGCTAAAGTACGTCGCACATGTGCCGAATCTTGGACAGCATAATCTGCTC
TCTACGAAACGGCTGACGCTCTGGATCAGCACTGATCGCGAACAACGCCA
TCACGCGGCCGAAGGAACGGCGTGGGAGCGAATTCTGGGTAATTGATAGC
GGTGAGACAGAGCACATGACACAAGACCCGGCGGGTCTAGAGGATTACAC
GCCGGCACCTGTCGGAGATCGAGTGGAGAGCGCCGGCGGTACCCTACTTC
CTGTGGCGGGATATGGACATCTCCGCCTCCTGGTGGGCCAAGGCAACGGC
AACTTCACCGACTCGACGCGCCAGCTCACGCTAAAGTACGTCGCACATGT
GCCGAATCTTGGACAGCATAATCTGCTCTCTACGAAACGGCTGACG
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