mRNA_H-elongata_contig112625.1030.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2I0W4K7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W4K7_9ASPA) HSP 1 Score: 65.1 bits (157), Expect = 1.480e-9 Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 1
Query: 49 CQICSRTGHTAQGCKDSGSALIANNAITRPK----ERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
CQIC + GH A C + A P+ + + W++DSG T H+T D A + P D V G+ L + YG QG ++ R+L L + HVPNL HNLLS +LT
Sbjct: 288 CQICGKIGHIALNCWHRNNYKYAPTIQNVPRALLTQPMPQQSWILDSGATNHITNDSASIHQSAPYNGSDSVTVLNGSSLSIHNYG-------QGLLPLPETPRKLHLFRLLHVPNLT-HNLLSVSKLT 408
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI) HSP 1 Score: 57.4 bits (137), Expect = 8.030e-7 Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 163 WVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPN-LGQHNLLSTKRLT 423
+++D+G + H+ DP+ L DY A +E A G L+PVAGYG+LR+ T + ++ LK VAH P+ +G NL+ KRLT
Sbjct: 751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVT--------TQAGLKIELKDVAHCPSAIG--NLIGGKRLT 828
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH) HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6 Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1
Query: 157 EFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
+ W+IDSG T+HMT +P+ + TP V +A G P+ G G + L T+ +TL V VP+L HNLLS K++T
Sbjct: 21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 95
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH) HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5 Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 106 ALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
+L+++N+ K+ W+IDSG T+HMT +P+ + TP V +A G P+ G G + L T+ +TL V VP+L HNLLS K++T
Sbjct: 224 SLLSSNSAFNWKD-----MWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 310
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2N9EP24_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EP24_FAGSY) HSP 1 Score: 53.5 bits (127), Expect = 1.680e-5 Identity = 39/130 (30.00%), Postives = 56/130 (43.08%), Query Frame = 1
Query: 49 CQICSRTGHTAQGC----------KDSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLS 408
CQIC + GHTA C + S L A + T S +W+ D+G T+H T D A ++ T D + G +LP+ GH +L S L++ VPN+ + NLLS
Sbjct: 317 CQICYKMGHTAIDCYHRMDFTYQGRHPPSKLAAMASSTH---NLSSNYWISDTGATDHFTPDLANIQHPTEYTGTDTITVGNGNILPITHIGHAQLRA---------SKYLFALRHTLRVPNM-KSNLLS 433
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MJW7_MALBA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MJW7_MALBA) HSP 1 Score: 52.4 bits (124), Expect = 4.260e-5 Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query: 94 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
D+G+ A N P + W+IDSG ++HMT + +T P+ + V+ A G PV G G + L G L+L V HVPNL HNLLS +LT
Sbjct: 326 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 417
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NTL9_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NTL9_MALBA) HSP 1 Score: 52.4 bits (124), Expect = 4.350e-5 Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query: 94 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 423
D+G+ A N P + W+IDSG ++HMT + +T P+ + V+ A G PV G G + L G L+L V HVPNL HNLLS +LT
Sbjct: 324 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 415
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MDT6_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MDT6_MALBA) HSP 1 Score: 52.0 bits (123), Expect = 5.210e-5 Identity = 39/106 (36.79%), Postives = 48/106 (45.28%), Query Frame = 1
Query: 106 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
A +A A + P SE+W++DSG T HMT D + L P D V A G L +A G L + T L L V HVP L QH LLS +L
Sbjct: 356 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAAPYSSSDTVTGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 451
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NFL3_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NFL3_MALBA) HSP 1 Score: 51.6 bits (122), Expect = 7.770e-5 Identity = 38/106 (35.85%), Postives = 48/106 (45.28%), Query Frame = 1
Query: 106 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
A +A A + P SE+W++DSG T HMT D + L P D + A G L +A G L + T L L V HVP L QH LLS +L
Sbjct: 8 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAVPYSSSDTITGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 103
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A1J6J5K6_NICAT (Protein eceriferum 3 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6J5K6_NICAT) HSP 1 Score: 51.6 bits (122), Expect = 7.950e-5 Identity = 40/140 (28.57%), Postives = 64/140 (45.71%), Query Frame = 1
Query: 37 PPRRCQICSRTGHTAQGCKDSGSALIANNAITRPKER-----------RGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDR-VESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 420
P +C+IC++ GH A CK A+ + +E + S+FW+IDSG T HMT D +++T +G++ V G + G G + + G +D V +VP++ Q NLLS +L
Sbjct: 750 PDAKCKICNQLGHEAVICKGKYQKHEADAQVANEEEEDHLFVATILSTKKSDFWLIDSGCTNHMTYDRNLFKEFTS--IGNKKVRIGNGDYILAKGKGTVAIPTNSGTKKISD---------VLYVPDIDQ-NLLSVGQL 877 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112625.1030.1 >prot_H-elongata_contig112625.1030.1 ID=prot_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MFAGRGNGHGSNPPRRCQICSRTGHTAQGCKDSGSALIANNAITRPKERRback to top mRNA from alignment at H-elongata_contig112625:168..887+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112625.1030.1 ID=mRNA_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig112625:168..887+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112625:168..887+ >mRNA_H-elongata_contig112625.1030.1 ID=mRNA_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig112625:168..887+ (Himanthalia elongata Himel1 dioecious)back to top |