mRNA_H-elongata_contig112607.1029.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 198 bits (504), Expect = 9.390e-56 Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
LPDR +QK PLPFKMV P+QLH AV+ TR EMRRALVSRFYGRVWD+ TLDPPFFC ACLLTPPF+EGLH+ AMKLAA D +YLP++ST T PT+DE+V AKLD W EIK+RAVEAVKK+QA S GAAG
Sbjct: 532 LPDRGQQKKPLPFKMVPPEQLHAAVEKTRVEMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKEQAAASSGPGAAG 665
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.270e-46 Identity = 81/134 (60.45%), Postives = 98/134 (73.13%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
LPDR+EQK PLP KMV+ D+LHP + R E+ RALVSRFYGRVWDD LDP FCD ACLLTPPF+EG +++AMKL AE+ +YL A ST PT DE V+ KL+G+W+EI KRAV AVK +G+ G G
Sbjct: 279 LPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWVEINKRAVTAVKTAHNRAAGEGGGQG 412
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 167 bits (423), Expect = 4.070e-46 Identity = 85/136 (62.50%), Postives = 99/136 (72.79%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQ--ADGSGDSGAAG 402
LPDR+EQK LP KMV PD LHP K R ++ RALVSR YGRVWD TLDP FFCD +CLLTPPF+EG H++AMKL AE+ YLPA S PT E+VK KLDGVW +IK+ AV+AVK Q A+GSG G+ G
Sbjct: 248 LPDREEQKKALPHKMVEPDDLHPVAKKARSKLGRALVSRLYGRVWDHNTLDPSFFCDASCLLTPPFSEGHHLSAMKLTAEEHAYLPAGSVVVAPTSYEEVKEKLDGVWTKIKQGAVKAVKTAQSEAEGSGGDGSGG 383
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.660e-45 Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
LPDR+EQK PLP KMV+ D+LHP + R E+ RALVSRFYGRVWDD LDP FCD ACLLTPPF+EG + +AMKL AE+ +YL A ST PT DE V+ KL+G+W EIKKRA+ AVK Q +G+ G G
Sbjct: 408 LPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITAVKTAQNRAAGEGGGQG 541
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.790e-44 Identity = 79/124 (63.71%), Postives = 91/124 (73.39%), Query Frame = -3
Query: 31 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQA 402
LPDR +QK LP KMV+ D LHP R E+ RALV+RFYGRVWD TLDP CD CLLTPPF+EG +++AMKL AE+ +YLPA S T PTLDE+VK KLDG W EIKKRAV AVK Q+
Sbjct: 158 LPDRKDQKKALPHKMVAHDDLHPVAHKARNELCRALVTRFYGRVWDTSTLDPSVLCDAPCLLTPPFSEGNYVSAMKLTAEECEYLPAGSCVTAPTLDEEVKEKLDGAWTEIKKRAVAAVKTAQS 281
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE) HSP 1 Score: 152 bits (383), Expect = 3.880e-43 Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = -3
Query: 1 MVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 360
MV+ D LHP + RQE+ RALV+RFYGRVWD+ TLDP F D ACLLTPPF+EG +++AMKL E+GDYLPA S+ PT DE V+ KLDG W EI+KRAV AVKK Q +GDS G
Sbjct: 1 MVAHDDLHPVAQKARQELCRALVTRFYGRVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKKAQRQAAGDSDGGG 120
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.990e-42 Identity = 80/134 (59.70%), Postives = 96/134 (71.64%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
LPDR EQK PL KMV+ D+LHP + R ++ RALVSRFYG VWDD LDP FCD ACLLTPPF+EG +++AMKL AE+ D L A ST PT DE V+ KL+G+W EIKKRAV AVK +Q +G+ G G
Sbjct: 288 LPDRKEQKKPLRHKMVAHDELHPVAQKARDKLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEGGGQG 421
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.740e-40 Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = -3
Query: 19 DEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSG 390
+EQK LP KMV+ D LHP + R ++ RALV+RFYGRVWD TLDP CD ACLLTPPF+EG +++AMKL AE +YLP S T PT DE+V+ KLDG W EIKKRAV AVK Q+ +G
Sbjct: 197 EEQKKALPQKMVAHDDLHPVAQKARNKLCRALVTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEGCEYLPTGSCVTAPTPDEEVQKKLDGAWAEIKKRAVAAVKTAQSRAAG 320
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.760e-40 Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = -3
Query: 1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
LP+R EQK LP KMVS DQLHP + R+E+ RAL+SR Y RVW++ + +P FFCD ACLLTPPF+EG H++AM+L AED YLP SS PT D +V AKLD W EI+KRAVE+VK +Q D +G S A G
Sbjct: 210 LPNRGEQKKALPSKMVSADQLHPTTTLAREELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQ-DRAGGSDAGG 342
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.940e-37 Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = -3
Query: 79 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVW 402
LPDR EQK LP MV+ D L P + R E+ RAL +RFYGRVWD TLDP CD ACLLTPPF+EG +++AMKL AE+G+YLPA S T PTLDE+V+ KLDG W
Sbjct: 244 LPDRKEQKKALPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEEGEYLPAGSCVTAPTLDEEVQEKLDGAW 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112607.1029.1 >prot_H-elongata_contig112607.1029.1 ID=prot_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp ACCTAITAAIGLLLLDSFNGALLDFHPNPVQLCLHFLIQRGGGCGGGGGQback to top mRNA from alignment at H-elongata_contig112607:602..1336- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112607.1029.1 ID=mRNA_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig112607:602..1336- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112607:602..1336- >mRNA_H-elongata_contig112607.1029.1 ID=mRNA_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig112607:602..1336- (Himanthalia elongata Himel1 dioecious)back to top |