mRNA_H-elongata_contig1126.1027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1126.1027.1
Unique NamemRNA_H-elongata_contig1126.1027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI00098A835B (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098A835B)

HSP 1 Score: 55.5 bits (132), Expect = 6.570e-7
Identity = 28/85 (32.94%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:    7 IRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVM 261
            + FG+V ++D T   N Y  P    V ++  +   +     + D T DT +WVL  ++ +  +  PR  +TD DAAM  A RKV+
Sbjct:  339 LDFGDVIVFDSTYKMNRYGMPFIPFVGLNNHHCTTVFGCAVVLDQTEDTYVWVLQTFLRAHCQKKPRSVITDGDAAMIRAVRKVL 423
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BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: A0A6A3CVF4_HIBSY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CVF4_HIBSY)

HSP 1 Score: 55.1 bits (131), Expect = 8.810e-7
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:    7 IRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPN 267
            I FG+V  +D T   N Y  P+  +V ++  +N  + A   +AD T+ T  WVL K++       P   VTD D AM  A + V+PN
Sbjct:  152 ICFGDVIAFDTTYKDNLYGRPIMPIVGVNRHHNTIMFATAIIADETSQTFEWVLQKFLEVMMNKSPISVVTDGDRAMQRAIKSVIPN 238
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BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI000E704368 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E704368)

HSP 1 Score: 54.3 bits (129), Expect = 1.520e-6
Identity = 29/86 (33.72%), Postives = 39/86 (45.35%), Query Frame = 1 
Query:   10 RFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPN 267
            +FG V  +D T   N Y  P      ++  Y         L D T  T IW+ + +I +     P   +TD DAAMT A +KV PN
Sbjct:    5 QFGEVVFFDTTYRTNKYGMPFAPFTGVNHHYQTIQFGCALLQDETEPTFIWLFHIWIEAMRGQHPSAIITDQDAAMTTAIKKVFPN 90
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: A0A8I7BB90_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7BB90_HORVV)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-6
Identity = 27/87 (31.03%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    7 IRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPN 267
            + +G+VT++D T   N Y  P    V ++      + A    +D T  T +W+L  ++ +  +  P+  +TD DAAM  A RKV+P+
Sbjct:  268 LDYGDVTVFDSTYNMNRYGMPFIPFVGLNNHRCTMVFACAIFSDETEGTYVWLLETFLKANCQKKPQSVITDGDAAMIRALRKVLPD 354
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI001ABC108A (protein FAR1-RELATED SEQUENCE 5-like n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC108A)

HSP 1 Score: 53.5 bits (127), Expect = 3.000e-6
Identity = 28/85 (32.94%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:    7 IRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVM 261
            + FG+VT++D T   N Y  P    V +       +     ++D T DT +WVL  ++ +  +  PR  +TD DA M  A RKV+
Sbjct:   53 LDFGDVTVFDITYKMNRYGMPFIPFVGLTNHRCTTVFGCAVVSDETEDTYVWVLQTFLRAHYQKKPRSVITDRDATMIRAIRKVL 137
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI000D0D3B70 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0D3B70)

HSP 1 Score: 53.1 bits (126), Expect = 4.110e-6
Identity = 26/86 (30.23%), Postives = 43/86 (50.00%), Query Frame = 1 
Query:   13 FGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPNT 270
            FG++ ++D T   N Y  P    + +D   +  +     ++D T  +  W+L  ++ +     PR  +TD DAAM  A +KVMP T
Sbjct:  145 FGDLVVFDSTYRVNRYNLPFVPFIGVDHHRSTIVFGVGIVSDETVSSYEWLLQSFLEAMSHKNPRSVITDGDAAMRKAIKKVMPRT 230
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI000E6F9D9F (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F9D9F)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-6
Identity = 27/86 (31.40%), Postives = 40/86 (46.51%), Query Frame = 1 
Query:   10 RFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPN 267
            +FG+V  +D T   N Y  P      ++  Y         L D T  T  W+ +K++ +     P   +T+ DAAM GA +KV PN
Sbjct:  108 QFGDVVFFDTTYRTNKYEMPFAPFTGVNHHYQNIQFGCALLQDETEVTFSWLFSKWLEAMGEKHPSAIITNQDAAMVGAIKKVFPN 193
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI00052FF5CB (protein FAR1-RELATED SEQUENCE 5 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FF5CB)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-5
Identity = 26/86 (30.23%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:   13 FGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPNT 270
            FG++ ++D T   N Y  P    + +D   +  +     ++D T  +  W+L  ++       PR  +TD DAAM  A +KVMP T
Sbjct:  239 FGDLVVFDSTYRVNRYNLPFVPFIGVDHHRSTIVFGVGIVSDETVSSYEWLLQSFLEVMSHKNPRSVITDGDAAMRKAIKKVMPRT 324
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: A0A0Q3IKU7_BRADI (Protein FAR1-RELATED SEQUENCE (Fragment) n=5 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3IKU7_BRADI)

HSP 1 Score: 52.0 bits (123), Expect = 1.070e-5
Identity = 26/86 (30.23%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:   13 FGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPNT 270
            FG++ ++D T   N Y  P    + +D   +  +     ++D T  +  W+L  ++       PR  +TD DAAM  A +KVMP T
Sbjct:  232 FGDLVVFDSTYRVNRYNLPFVPFIGVDHHRSTIVFGVGIVSDETVSSYEWLLQSFLEVMSHKNPRSVITDGDAAMRKAIKKVMPRT 317
[Close]
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Match: UPI00098ADE8C (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098ADE8C)

HSP 1 Score: 51.6 bits (122), Expect = 1.430e-5
Identity = 26/85 (30.59%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    7 IRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTDTLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVM 261
            + +G+V ++D+T   N Y  P    V ++      + A   ++D T  T +W+LN ++ +  +  P+  +TD DAAM  A RKV+
Sbjct:  282 LDYGDVVVFDNTYKMNRYGMPFIPFVGLNNHRCTTVFACAIVSDETEATYVWLLNTFLKANCQKRPKSVITDGDAAMIRAIRKVL 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1126.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI00098A835B6.570e-732.94protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegil... [more]
A0A6A3CVF4_HIBSY8.810e-735.63Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syr... [more]
UPI000E7043681.520e-633.72protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papav... [more]
A0A8I7BB90_HORVV2.930e-631.03Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulg... [more]
UPI001ABC108A3.000e-632.94protein FAR1-RELATED SEQUENCE 5-like n=4 Tax=Aegil... [more]
UPI000D0D3B704.110e-630.23protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Brach... [more]
UPI000E6F9D9F5.720e-631.40protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papav... [more]
UPI00052FF5CB1.030e-530.23protein FAR1-RELATED SEQUENCE 5 n=1 Tax=Brachypodi... [more]
A0A0Q3IKU7_BRADI1.070e-530.23Protein FAR1-RELATED SEQUENCE (Fragment) n=5 Tax=B... [more]
UPI00098ADE8C1.430e-530.59protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1126contigH-elongata_contig1126:4136..4405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.726234-CDS-H-elongata_contig1126:4135..44051622929647.726234-CDS-H-elongata_contig1126:4135..4405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1126 4136..4405 -
1691679104.4546683-CDS-H-elongata_contig1126:4135..44051691679104.4546683-CDS-H-elongata_contig1126:4135..4405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1126 4136..4405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1126.1027.1prot_H-elongata_contig1126.1027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1126 4136..4405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1126.1027.1

>prot_H-elongata_contig1126.1027.1 ID=prot_H-elongata_contig1126.1027.1|Name=mRNA_H-elongata_contig1126.1027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LGIRFGNVTLYDDTAVKNNYIFPLGFMVVIDAEYNARIVAQMPLADSTTD
TLIWVLNKYIASRERLPPRVFVTDADAAMTGAARKVMPNT
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mRNA from alignment at H-elongata_contig1126:4136..4405-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1126.1027.1 ID=mRNA_H-elongata_contig1126.1027.1|Name=mRNA_H-elongata_contig1126.1027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig1126:4136..4405- (Himanthalia elongata Himel1 dioecious)
TTGGGGATTCGGTTCGGCAATGTCACCCTTTACGATGACACGGCGGTGAA
GAACAACTACATATTTCCTCTTGGTTTCATGGTCGTAATCGATGCCGAGT
ACAACGCGCGCATCGTTGCCCAGATGCCGTTGGCAGACTCAACTACGGAC
ACCTTAATCTGGGTCTTGAACAAGTATATCGCCTCGCGAGAGAGACTGCC
ACCACGTGTTTTTGTCACCGATGCAGACGCGGCCATGACGGGTGCGGCGC
GAAAAGTGATGCCAAACACG
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Coding sequence (CDS) from alignment at H-elongata_contig1126:4136..4405-

>mRNA_H-elongata_contig1126.1027.1 ID=mRNA_H-elongata_contig1126.1027.1|Name=mRNA_H-elongata_contig1126.1027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig1126:4136..4405- (Himanthalia elongata Himel1 dioecious)
TTGGGGATTCGGTTCGGCAATGTCACCCTTTACGATGACACGGCGGTGAA
GAACAACTACATATTTCCTCTTGGTTTCATGGTCGTAATCGATGCCGAGT
ACAACGCGCGCATCGTTGCCCAGATGCCGTTGGCAGACTCAACTACGGAC
ACCTTAATCTGGGTCTTGAACAAGTATATCGCCTCGCGAGAGAGACTGCC
ACCACGTGTTTTTGTCACCGATGCAGACGCGGCCATGACGGGTGCGGCGC
GAAAAGTGATGCCAAACACGTTGGGGATTCGGTTCGGCAATGTCACCCTT
TACGATGACACGGCGGTGAAGAACAACTACATATTTCCTCTTGGTTTCAT
GGTCGTAATCGATGCCGAGTACAACGCGCGCATCGTTGCCCAGATGCCGT
TGGCAGACTCAACTACGGACACCTTAATCTGGGTCTTGAACAAGTATATC
GCCTCGCGAGAGAGACTGCCACCACGTGTTTTTGTCACCGATGCAGACGC
GGCCATGACGGGTGCGGCGCGAAAAGTGATGCCAAACACG
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